AT2G38880

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003710
Physical Location & Seq
Forward (+)
16238401 .. 16240883
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38880.11

Sequence Viewer

Length: 426 bp
ATGGCGGATACGCCTTCGAGCCCAGCTGGAGATGGCGGAGAAAGCGGCGGTTCCGTTAGGGAGCAGGATCGATACCTTCCTATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCCTCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGTGAATGGTGATGATTTGTTGTGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACCTCTAAAGATATACCTAGCGAGGTACAGGGAGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCTGGTGGCGGTGTTTCTGGTGAAGAAATGCCGAGCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 ko05152 ko05166 map04612 map05152 map05166
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

141

Amino Acids

15.18

Weight (kDa)

4.86

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 25 - 89 3.7e-27 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 5, 36, 45, 48, 393
AclWI GGATC 4 cut(s) 75, 107, 358, 379
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 125
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 4 cut(s) 26, 86, 186, 420
AluI AGCT 4 cut(s) 26, 86, 186, 420
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 4 cut(s) 75, 107, 358, 379
AoxI GGCC 1 cut(s) 201
AsuHPI GGTGA 3 cut(s) 257, 350, 416
BanII GRGCYC 1 cut(s) 23
BccI CCATC 2 cut(s) 26, 362
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 2 cut(s) 195, 314
BfmI CTRYAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 52, 297
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 133, 373
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 203
BshVI ATCGAT 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 175
BsmBI CGTCTC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 4 cut(s) 67, 99, 350, 371
BspACI CCGC 5 cut(s) 5, 36, 45, 48, 393
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 70
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 52, 297
BspPI GGATC 4 cut(s) 75, 107, 358, 379
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 1 cut(s) 204
BssMI GATC 4 cut(s) 67, 99, 350, 371
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 157, 238
BstDEI CTNAG 2 cut(s) 147, 174
BstKTI GATC 4 cut(s) 70, 102, 353, 374
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 4 cut(s) 67, 99, 350, 371
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 81
Bsu15I ATCGAT 1 cut(s) 70
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 203
BsuTUI ATCGAT 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 70
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 103
CviJI RGCY 6 cut(s) 21, 26, 86, 186, 203, 420
CviKI_1 RGCY 6 cut(s) 21, 26, 86, 186, 203, 420
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 147, 174
DpnI GATC 4 cut(s) 69, 101, 352, 373
DpnII GATC 4 cut(s) 67, 99, 350, 371
EciI GGCGGA 2 cut(s) 20, 51
Eco24I GRGCYC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 83, 104, 310
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 2 cut(s) 195, 314
GluI GCNGC 1 cut(s) 46
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 203
HgaI GACGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 106
HphI GGTGA 3 cut(s) 257, 350, 416
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 103, 161, 354
HpyAV CCTTC 2 cut(s) 24, 86
HpyCH4III ACNGT 2 cut(s) 157, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 2 cut(s) 147, 174
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 4 cut(s) 67, 99, 350, 371
LmnI GCTCC 1 cut(s) 61
LweI GCATC 2 cut(s) 133, 373
MaeI CTAG 2 cut(s) 195, 314
MalI GATC 4 cut(s) 69, 101, 352, 373
MboI GATC 4 cut(s) 67, 99, 350, 371
MboII GAAGA 2 cut(s) 118, 419
MhlI GDGCHC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 6 cut(s) 129, 193, 277, 309, 312, 328
MspA1I CMGCKG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 4 cut(s) 67, 99, 350, 371
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 52, 297
PagI TCATGA 1 cut(s) 102
PctI GAATGC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 52, 297
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 4 cut(s) 67, 99, 350, 371
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 23
SetI ASST 9 cut(s) 28, 78, 88, 188, 294, 301, 315, 323, 422
SfaNI GCATC 2 cut(s) 133, 373
SfcI CTRYAG 1 cut(s) 81
SsiI CCGC 5 cut(s) 5, 36, 45, 48, 393
SspMI CTAG 2 cut(s) 195, 314
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 157, 238
TaqI TCGA 2 cut(s) 17, 70
TauI GCSGC 1 cut(s) 48
TscAI CASTG 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 119, 169, 178
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 211
XspI CTAG 2 cut(s) 195, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.