Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003710

Physical Location & Seq

Genomic Coordinates Reverse (-)

16513966 .. 16518574

Gene Structure 4609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20270.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCCAGATGTTCAGATTCCCACTTCTCGCCGTGTTACCAGATGGATACCAGTAACAGTTCTCCACTTCTCGCCGTGCTCCTTTTTGAGCCGACCAAAACAAACCTTCTTCCATCATTCCTTCTCGAATCTCCAGTCGTCAGATTTCTCAACCCAAAACGCGCGAAATACAAACCCACCGCCCTCCCTCCTCCTCCCTTCTCTCTCTTCACAACTCCAGGGGATTAGTGTTTTGTTTTTGATTGTGATAATGGCGGAGGTACCGACGAGCCCGCCGGGCGGTAACGACAGCGGCGGCGAGCAAAGCCCGCAGAACGGGAGCAGCAGCAGCGTGAGGGAGCAGGACAGGTACCTCCCAATCGCGAACATCAGCCGGATTATGAAGAAGGCGCTGCCGCAGAACGGCAAGATCGCCAAGGACGCCAAGGACACTGTCCAGGAATGCGTCTCTGAATTCATCAGCTTCGTCACCAGCGAGGCTAGCGATAAGTGTCAGAAGGAGAAGAGGAAGACGATTAATGGTGATGATTTGCTGTGGGCGATGGCTACGTTAGGGTTTGAGGACTATATTGAGCCGCTCAGGATTTACTTGGCTAGGTACAGGGAGTTGGAGGGTGATGCAAAGGGTTCTGCGAGGGGTGGAGAAGGATCTGCTAAAGGGAATCCTGTTGGAGCTATGCCTGGGCAAAATTCACAGTTTGTTCATCAGCCACCTTTGAACTATGTCAATAGTCAAGAGGACTATTATGTGCCTTTGAACAATATGGGGAATGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

260

Amino Acids

28.48

Weight (kDa)

6.91

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	25 - 98	5e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	34 - 98	2.4e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880
fragaria_vesca	FvH4_7g20270 FvH4_7g20270 FvH4_7g20270 FvH4_7g20270
malus_domestica	MD01G1112400.v1.1 MD07G1180200.v1.1
prunus_persica	Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1
pyrus_communis	pycom01g14090 pycom07g17350
rosa_chinensis	RchiOBHm_Chr1g0364211
rosa_multiflora	Rmu_sc0000071.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292560
rosa_rugosa	Rorug01G0314800 Rorug01G0314900 Rorug01G0315000
rosa_samantha	Rh1AG322200 Rh1BG285000 Rh1CG301500 Rh1DG316400
rosa_wichuraiana	Rw1G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	259, 348
AccB1I	GGYRCC	2 cut(s)	259, 348
AccBSI	CCGCTC	1 cut(s)	577
AccII	CGCG	3 cut(s)	161, 163, 362
AciI	CCGC	9 cut(s)	179, 254, 272, 279, 291, 294, 308, 395, 575
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	2 cut(s)	452, 688
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	3 cut(s)	261, 350, 599
AfiI	CCNNNNNNNGG	3 cut(s)	278, 314, 401
AgsI	TTSAA	2 cut(s)	718, 757
AjnI	CCWGG	3 cut(s)	216, 435, 679
AluBI	AGCT	2 cut(s)	462, 674
AluI	AGCT	2 cut(s)	462, 674
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	1 cut(s)	655
ApeKI	GCWGC	4 cut(s)	321, 324, 327, 391
ApoI	RAATTY	2 cut(s)	452, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AseI	ATTAAT	1 cut(s)	516
Asp718I	GGTACC	2 cut(s)	259, 348
AspLEI	GCGC	2 cut(s)	163, 391
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	460, 533, 626
AsuNHI	GCTAGC	1 cut(s)	479
BanI	GGYRCC	2 cut(s)	259, 348
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	4 cut(s)	333, 336, 339, 378
BccI	CCATC	3 cut(s)	36, 120, 535
BceAI	ACGGC	3 cut(s)	15, 58, 418
BciT130I	CCWGG	3 cut(s)	218, 437, 681
BciVI	GTATCC	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	2 cut(s)	480, 594
BfoI	RGCGCY	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	39
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	8 cut(s)	292, 295, 322, 325, 328, 392, 395, 575
BlsI	GCNGC	8 cut(s)	293, 296, 323, 326, 329, 393, 396, 576
Bme1390I	CCNGG	4 cut(s)	218, 276, 437, 681
BmiI	GGNNCC	2 cut(s)	261, 350
BmrFI	CCNGG	4 cut(s)	218, 276, 437, 681
BmsI	GCATC	1 cut(s)	607
BmtI	GCTAGC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	515
BpmI	CTGGAG	2 cut(s)	116, 200
Bpu10I	CCTNAGC	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	217, 414, 423, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 314, 401
Bse1I	ACTGG	2 cut(s)	50, 133
BseBI	CCWGG	3 cut(s)	218, 437, 681
BseDI	CCNNGG	4 cut(s)	217, 414, 423, 680
BseLI	CCNNNNNNNGG	3 cut(s)	278, 314, 401
BseMII	CTCAG	1 cut(s)	592
BseNI	ACTGG	2 cut(s)	50, 133
BseRI	GAGGAG	2 cut(s)	179, 182
BseXI	GCAGC	4 cut(s)	333, 336, 339, 378
Bsh1236I	CGCG	3 cut(s)	161, 163, 362
BshNI	GGYRCC	2 cut(s)	259, 348
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	275, 373
BslI	CCNNNNNNNGG	3 cut(s)	278, 314, 401
BsmAI	GTCTC	1 cut(s)	451
BsmBI	CGTCTC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	80, 272
Bsp143I	GATC	2 cut(s)	408, 647
Bsp68I	TCGCGA	1 cut(s)	362
BspACI	CCGC	9 cut(s)	179, 254, 272, 279, 291, 294, 308, 395, 575
BspCNI	CTCAG	1 cut(s)	591
BspFNI	CGCG	3 cut(s)	161, 163, 362
BspLI	GGNNCC	2 cut(s)	261, 350
BspOI	GCTAGC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	655
BspT107I	GGYRCC	2 cut(s)	259, 348
BsrBI	CCGCTC	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	50, 133
BssECI	CCNNGG	4 cut(s)	217, 414, 423, 680
BssMI	GATC	2 cut(s)	408, 647
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	414, 423
Bst2UI	CCWGG	3 cut(s)	218, 437, 681
Bst4CI	ACNGT	3 cut(s)	58, 433, 696
Bst6I	CTCTTC	2 cut(s)	211, 497
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	272, 299, 308, 481
BstDEI	CTNAG	1 cut(s)	578
BstFNI	CGCG	3 cut(s)	161, 163, 362
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	163, 391
BstKTI	GATC	2 cut(s)	411, 650
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	2 cut(s)	408, 647
BstMWI	GCNNNNNNNGC	6 cut(s)	276, 303, 307, 327, 419, 480
BstNI	CCWGG	3 cut(s)	218, 437, 681
BstSCI	CCNGG	4 cut(s)	216, 274, 435, 679
BstUI	CGCG	3 cut(s)	161, 163, 362
BstV1I	GCAGC	4 cut(s)	333, 336, 339, 378
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuI	GTATCC	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	554
BtsIMutI	CAGTG	1 cut(s)	429
BtuMI	TCGCGA	1 cut(s)	362
Cac8I	GCNNGC	4 cut(s)	272, 299, 308, 481
CfoI	GCGC	2 cut(s)	163, 391
CseI	GACGC	2 cut(s)	428, 433
Csp6I	GTAC	3 cut(s)	260, 349, 598
CviQI	GTAC	3 cut(s)	260, 349, 598
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	2 cut(s)	410, 649
DpnII	GATC	2 cut(s)	408, 647
Eam1104I	CTCTTC	2 cut(s)	211, 497
EarI	CTCTTC	2 cut(s)	211, 497
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	414, 423
Eco24I	GRGCYC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	216, 435, 679
EcoT14I	CCWWGG	2 cut(s)	414, 423
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	2 cut(s)	414, 423
Esp3I	CGTCTC	1 cut(s)	451
FaiI	YATR	6 cut(s)	380, 567, 677, 723, 747, 764
FauI	CCCGC	2 cut(s)	279, 315
Fnu4HI	GCNGC	8 cut(s)	292, 295, 322, 325, 328, 392, 395, 575
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	8 cut(s)	292, 295, 322, 325, 328, 392, 395, 575
FspBI	CTAG	2 cut(s)	480, 594
GlaI	GCGC	2 cut(s)	162, 390
GluI	GCNGC	8 cut(s)	292, 295, 322, 325, 328, 392, 395, 575
GsuI	CTGGAG	2 cut(s)	116, 200
HaeII	RGCGCY	1 cut(s)	392
HapII	CCGG	2 cut(s)	275, 373
HgaI	GACGC	2 cut(s)	428, 433
HhaI	GCGC	2 cut(s)	163, 391
Hin1I	GRCGYC	1 cut(s)	420
Hin6I	GCGC	2 cut(s)	161, 389
HinP1I	GCGC	2 cut(s)	161, 389
HinfI	GANTC	3 cut(s)	16, 127, 661
HpaII	CCGG	2 cut(s)	275, 373
HphI	GGTGA	3 cut(s)	460, 533, 626
Hpy188I	TCNGA	4 cut(s)	15, 142, 451, 495
Hpy188III	TCNNGA	4 cut(s)	124, 361, 580, 734
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	6 cut(s)	115, 130, 207, 379, 490, 638
HpyCH4III	ACNGT	3 cut(s)	58, 433, 696
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	1 cut(s)	620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	276, 303, 307, 327, 419, 480
HpyF3I	CTNAG	1 cut(s)	578
HpySE526I	ACGT	1 cut(s)	548
Hsp92I	GRCGYC	1 cut(s)	420
HspAI	GCGC	2 cut(s)	161, 389
KpnI	GGTACC	2 cut(s)	263, 352
Kzo9I	GATC	2 cut(s)	408, 647
LmnI	GCTCC	4 cut(s)	83, 318, 337, 671
Lsp1109I	GCAGC	4 cut(s)	333, 336, 339, 378
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	480, 594
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	4 cut(s)	34, 52, 281, 466
MalI	GATC	2 cut(s)	410, 649
MbiI	CCGCTC	1 cut(s)	577
MboI	GATC	2 cut(s)	408, 647
MboII	GAAGA	5 cut(s)	100, 198, 394, 514, 520
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	2 cut(s)	80, 272
MluCI	AATT	3 cut(s)	452, 688, 775
MmeI	TCCRAC	2 cut(s)	588, 649
MseI	TTAA	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	2 cut(s)	275, 373
MspR9I	CCNGG	4 cut(s)	218, 276, 437, 681
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	3 cut(s)	218, 437, 681
MvnI	CGCG	3 cut(s)	161, 163, 362
MwoI	GCNNNNNNNGC	6 cut(s)	276, 303, 307, 327, 419, 480
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	408, 647
NheI	GCTAGC	1 cut(s)	479
NlaIV	GGNNCC	2 cut(s)	261, 350
NmuCI	GTSAC	1 cut(s)	466
NruI	TCGCGA	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	16, 127, 661
PflFI	GACNNNGTC	1 cut(s)	431
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	8 cut(s)	293, 296, 323, 326, 329, 393, 396, 576
PshBI	ATTAAT	1 cut(s)	516
Psp6I	CCWGG	3 cut(s)	216, 435, 679
PspGI	CCWGG	3 cut(s)	216, 435, 679
PspN4I	GGNNCC	2 cut(s)	261, 350
PsuI	RGATCY	1 cut(s)	647
PsyI	GACNNNGTC	1 cut(s)	431
RruI	TCGCGA	1 cut(s)	362
RsaI	GTAC	3 cut(s)	261, 350, 599
RsaNI	GTAC	3 cut(s)	260, 349, 598
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	8 cut(s)	292, 295, 322, 325, 328, 392, 395, 575
Sau3AI	GATC	2 cut(s)	408, 647
ScrFI	CCNGG	4 cut(s)	218, 276, 437, 681
SduI	GDGCHC	2 cut(s)	80, 272
SetI	ASST	9 cut(s)	107, 261, 350, 354, 464, 551, 599, 676, 715
SfaNI	GCATC	1 cut(s)	607
Sse9I	AATT	3 cut(s)	452, 688, 775
SsiI	CCGC	9 cut(s)	179, 254, 272, 279, 291, 294, 308, 395, 575
SspMI	CTAG	2 cut(s)	480, 594
StyD4I	CCNGG	4 cut(s)	216, 274, 435, 679
StyI	CCWWGG	2 cut(s)	414, 423
TaaI	ACNGT	3 cut(s)	58, 433, 696
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	452, 688, 775
TauI	GCSGC	4 cut(s)	294, 297, 397, 577
TfiI	GAWTC	3 cut(s)	16, 127, 661
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	4 cut(s)	321, 324, 327, 391
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	395, 445, 692
TspRI	CASTG	1 cut(s)	436
Tth111I	GACNNNGTC	1 cut(s)	431
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	2 cut(s)	452, 688
XspI	CTAG	2 cut(s)	480, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.