Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003710

Physical Location & Seq

Genomic Coordinates Reverse (-)

42123520 .. 42129227

Gene Structure 5708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTAGTCGTCAGATTTCTCTCCAAAACGCGCGAAATACAAACCCACCGCCTCTCTCTCTCTACACAGGGATTGTTCTGATAATGGCGGAGGCACCGACGAGTCCGGCCGGCGGGAGCCACGAGAGCGGCGGCGAGCAGAGCCCGCAGAACGGGAGCAGCAGCAACGTGAGGGAGCAGGACAGGTACCTCCCAATCGCGAACATCAGTCGGATTATGAAGAAGGCGCTGCCGCAAAACGGCAAGATCGCCAAGGACGCTAAGGACACTGTGCAGGAGTGCGTCTCCGAATTCATCAGCTTCGTCACCAGCGAGGCCAGCGACAAGTGCCAGAAGGAGAAGAGAAAGACAATTAACGGTGACGATTTGCTGTGGGCGATGGCTACTTTAGGGTTTGAGGACTATATTGAGCCGCTCAGGATTTACTTGGCTAGGTACAGGGAGGTAATTACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

152

Amino Acids

16.78

Weight (kDa)

6.59

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	53 - 127	3.5e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	63 - 127	2.1e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880
fragaria_vesca	FvH4_7g20270 FvH4_7g20270 FvH4_7g20270 FvH4_7g20270
malus_domestica	MD01G1112400.v1.1 MD07G1180200.v1.1
prunus_persica	Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1
pyrus_communis	pycom01g14090 pycom07g17350
rosa_chinensis	RchiOBHm_Chr1g0364211
rosa_multiflora	Rmu_sc0000071.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292560
rosa_rugosa	Rorug01G0314800 Rorug01G0314900 Rorug01G0315000
rosa_samantha	Rh1AG322200 Rh1BG285000 Rh1CG301500 Rh1DG316400
rosa_wichuraiana	Rw1G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	94, 186
AccBSI	CCGCTC	2 cut(s)	129, 415
AccII	CGCG	3 cut(s)	32, 34, 200
AciI	CCGC	8 cut(s)	50, 89, 114, 129, 132, 146, 233, 413
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	2 cut(s)	188, 437
AfiI	CCNNNNNNNGG	3 cut(s)	113, 152, 239
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	289
AoxI	GGCC	2 cut(s)	108, 315
ApeKI	GCWGC	3 cut(s)	159, 162, 229
ApoI	RAATTY	1 cut(s)	290
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	34, 229
AsuHPI	GGTGA	2 cut(s)	298, 371
BanI	GGYRCC	2 cut(s)	94, 186
BanII	GRGCYC	1 cut(s)	146
BauI	CACGAG	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	171, 174, 216
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	230
BisI	GCNGC	7 cut(s)	130, 133, 160, 163, 230, 233, 413
BlsI	GCNGC	7 cut(s)	131, 134, 161, 164, 231, 234, 414
BmiI	GGNNCC	3 cut(s)	96, 119, 188
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
Bpu10I	CCTNAGC	2 cut(s)	261, 416
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 152, 239
Bse118I	RCCGGY	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	113, 152, 239
BseMII	CTCAG	1 cut(s)	430
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	3 cut(s)	171, 174, 216
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	3 cut(s)	32, 34, 200
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	110, 317
BshNI	GGYRCC	2 cut(s)	94, 186
BsiEI	CGRYCG	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	107, 111
BslI	CCNNNNNNNGG	3 cut(s)	113, 152, 239
BsmAI	GTCTC	1 cut(s)	289
BsmBI	CGTCTC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	110, 317
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	246
Bsp68I	TCGCGA	1 cut(s)	200
BspACI	CCGC	8 cut(s)	50, 89, 114, 129, 132, 146, 233, 413
BspANI	GGCC	2 cut(s)	110, 317
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	3 cut(s)	32, 34, 200
BspLI	GGNNCC	3 cut(s)	96, 119, 188
BspT107I	GGYRCC	2 cut(s)	94, 186
BsrBI	CCGCTC	2 cut(s)	129, 415
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	246
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	271, 359
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	4 cut(s)	112, 137, 146, 319
BstDEI	CTNAG	2 cut(s)	261, 416
BstFNI	CGCG	3 cut(s)	32, 34, 200
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	34, 229
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	246
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 141, 145, 257, 318, 327
BstUI	CGCG	3 cut(s)	32, 34, 200
BstV1I	GCAGC	3 cut(s)	171, 174, 216
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	110, 317
BtgZI	GCGATG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	267
BtuMI	TCGCGA	1 cut(s)	200
Cac8I	GCNNGC	4 cut(s)	112, 137, 146, 319
CfoI	GCGC	2 cut(s)	34, 229
Cfr10I	RCCGGY	1 cut(s)	110
CseI	GACGC	2 cut(s)	266, 271
Csp6I	GTAC	2 cut(s)	187, 436
CviJI	RGCY	8 cut(s)	110, 120, 144, 300, 317, 383, 412, 431
CviKI_1	RGCY	8 cut(s)	110, 120, 144, 300, 317, 383, 412, 431
CviQI	GTAC	2 cut(s)	187, 436
DdeI	CTNAG	2 cut(s)	261, 416
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	108
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	104
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	146
Eco52I	CGGCCG	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	289
FaiI	YATR	2 cut(s)	218, 405
FauI	CCCGC	2 cut(s)	107, 153
Fnu4HI	GCNGC	7 cut(s)	130, 133, 160, 163, 230, 233, 413
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	7 cut(s)	130, 133, 160, 163, 230, 233, 413
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	2 cut(s)	33, 228
GluI	GCNGC	7 cut(s)	130, 133, 160, 163, 230, 233, 413
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	110, 317
HapII	CCGG	2 cut(s)	107, 111
HgaI	GACGC	2 cut(s)	266, 271
HhaI	GCGC	2 cut(s)	34, 229
Hin6I	GCGC	2 cut(s)	32, 227
HinP1I	GCGC	2 cut(s)	32, 227
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	107, 111
HphI	GGTGA	2 cut(s)	298, 371
Hpy188I	TCNGA	4 cut(s)	15, 81, 213, 289
Hpy188III	TCNNGA	2 cut(s)	199, 418
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	217, 328
HpyCH4III	ACNGT	2 cut(s)	271, 359
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 141, 145, 257, 318, 327
HpyF3I	CTNAG	2 cut(s)	261, 416
HpySE526I	ACGT	1 cut(s)	168
HspAI	GCGC	2 cut(s)	32, 227
KpnI	GGTACC	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	117, 156, 175
Lsp1109I	GCAGC	3 cut(s)	171, 174, 216
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	304, 359
MalI	GATC	1 cut(s)	248
MbiI	CCGCTC	2 cut(s)	129, 415
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	232, 352
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	3 cut(s)	290, 351, 447
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	7 cut(s)	63, 85, 165, 200, 307, 391, 436
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	2 cut(s)	354, 457
MspI	CCGG	2 cut(s)	107, 111
MvnI	CGCG	3 cut(s)	32, 34, 200
MwoI	GCNNNNNNNGC	6 cut(s)	126, 141, 145, 257, 318, 327
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	1 cut(s)	246
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	3 cut(s)	96, 119, 188
NmuCI	GTSAC	2 cut(s)	304, 359
NruI	TCGCGA	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PdiI	GCCGGC	1 cut(s)	112
PkrI	GCNGC	7 cut(s)	131, 134, 161, 164, 231, 234, 414
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	96, 119, 188
RruI	TCGCGA	1 cut(s)	200
RsaI	GTAC	2 cut(s)	188, 437
RsaNI	GTAC	2 cut(s)	187, 436
SaqAI	TTAA	2 cut(s)	354, 457
SatI	GCNGC	7 cut(s)	130, 133, 160, 163, 230, 233, 413
Sau3AI	GATC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	6 cut(s)	171, 188, 192, 302, 437, 447
Sse9I	AATT	3 cut(s)	290, 351, 447
SsiI	CCGC	8 cut(s)	50, 89, 114, 129, 132, 146, 233, 413
SspMI	CTAG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	271, 359
TaiI	ACGT	1 cut(s)	171
TasI	AATT	3 cut(s)	290, 351, 447
TauI	GCSGC	4 cut(s)	132, 135, 235, 415
Tru1I	TTAA	2 cut(s)	354, 457
Tru9I	TTAA	2 cut(s)	354, 457
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	304, 359
TseI	GCWGC	3 cut(s)	159, 162, 229
Tsp45I	GTSAC	2 cut(s)	304, 359
TspDTI	ATGAA	2 cut(s)	233, 283
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.