Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003710

Physical Location & Seq

Genomic Coordinates Forward (+)

24828695 .. 24832311

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G219500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGGAGGCACCGACGAGCCCGGCAGGCGGGAGCCATGAAAGCGGCGGCGAGCAGAGCCCTCAGGGAGGCGGCGGCGGCGGCAGCGGCGTGCGTGAGCAGGACAGGTATCTGCCCATCGCCAACATCAGTCGCATCATGAAGAAGGCTTTGCCGCAAAACGGCAAGATCGCCAAGGACGCCAAGGACACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCGTCACCAGCGAGGCCAGTGACAAGTGCCAAAAGGAGAAGCGTAAGACCATCAACGGTGATGATTTGTTGTGGGCGATGGCCACGTTAGGGTTTGAGGACTATATTGAGCCCCTCCGGATTTACTTGGCTAGGTACAGGGAGTTGGAGGGTGATGCAAAGGGATCTGCTAGGGGTGGAGATGGATCTGCTAAAGGGAATGCTATTGGAGCCATGCCTGGCCCAAGTTCACAGCAGTTTGTTCATCAGGGATCATTGAACTACGTCAATCCTCAAGAGGAATATTATGTGCCTTTGAACAATATGGGAAATGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

181

Amino Acids

19.19

Weight (kDa)

5.27

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880
fragaria_vesca	FvH4_7g20270 FvH4_7g20270 FvH4_7g20270 FvH4_7g20270
malus_domestica	MD01G1112400.v1.1 MD07G1180200.v1.1
prunus_persica	Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1
pyrus_communis	pycom01g14090 pycom07g17350
rosa_chinensis	RchiOBHm_Chr1g0364211
rosa_multiflora	Rmu_sc0000071.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292560
rosa_rugosa	Rorug01G0314800 Rorug01G0314900 Rorug01G0315000
rosa_samantha	Rh1AG322200 Rh1BG285000 Rh1CG301500 Rh1DG316400
rosa_wichuraiana	Rw1G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccIII	TCCGGA	1 cut(s)	339
AclWI	GGATC	3 cut(s)	394, 415, 481
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	4 cut(s)	29, 68, 161, 312
AgsI	TTSAA	2 cut(s)	481, 520
AjnI	CCWGG	2 cut(s)	195, 439
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	3 cut(s)	394, 415, 481
Aor13HI	TCCGGA	1 cut(s)	339
AoxI	GGCC	3 cut(s)	237, 303, 442
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	220, 293, 386
AxyI	CCTNAGG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	3 cut(s)	23, 62, 336
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	4 cut(s)	125, 281, 295, 398
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	197, 441
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	354, 393
BglI	GCCNNNNNGGC	1 cut(s)	27
BisI	GCNGC	9 cut(s)	46, 49, 73, 76, 79, 82, 85, 88, 155
BlsI	GCNGC	9 cut(s)	47, 50, 74, 77, 80, 83, 86, 89, 156
Bme1390I	CCNGG	3 cut(s)	23, 197, 441
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	12, 35, 433
BmrFI	CCNGG	3 cut(s)	23, 197, 441
BmsI	GCATC	2 cut(s)	144, 367
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	174, 183
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 68, 161, 312
Bse1I	ACTGG	1 cut(s)	240
Bse21I	CCTNAGG	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	197, 441
BseDI	CCNNGG	2 cut(s)	174, 183
BseLI	CCNNNNNNNGG	4 cut(s)	29, 68, 161, 312
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	3 cut(s)	239, 305, 444
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	23, 340
BslI	CCNNNNNNNGG	4 cut(s)	29, 68, 161, 312
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsmI	GAATGC	2 cut(s)	206, 427
BsnI	GGCC	3 cut(s)	239, 305, 444
Bsp1286I	GDGCHC	3 cut(s)	23, 62, 336
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	168, 386, 407, 473
BspANI	GGCC	3 cut(s)	239, 305, 444
BspCNI	CTCAG	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	3 cut(s)	12, 35, 433
BspPI	GGATC	3 cut(s)	394, 415, 481
BspT107I	GGYRCC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	174, 183
BssMI	GATC	4 cut(s)	168, 386, 407, 473
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	174, 183
Bst2UI	CCWGG	2 cut(s)	197, 441
Bst4CI	ACNGT	2 cut(s)	193, 281
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	28, 53, 92
BstDEI	CTNAG	1 cut(s)	63
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	171, 389, 410, 476
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	4 cut(s)	168, 386, 407, 473
BstMWI	GCNNNNNNNGC	9 cut(s)	27, 42, 57, 78, 81, 84, 87, 179, 431
BstNI	CCWGG	2 cut(s)	197, 441
BstSCI	CCNGG	3 cut(s)	21, 195, 439
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	386, 407
BstYI	RGATCY	2 cut(s)	386, 407
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	239, 305, 444
BtgZI	GCGATG	2 cut(s)	103, 314
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	28, 53, 92
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	443
CseI	GACGC	2 cut(s)	188, 193
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	3 cut(s)	38, 139, 436
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	4 cut(s)	170, 388, 409, 475
DpnII	GATC	4 cut(s)	168, 386, 407, 473
EaeI	YGGCCR	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	174, 183
Eco24I	GRGCYC	3 cut(s)	23, 62, 336
Eco81I	CCTNAGG	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	195, 439
EcoT14I	CCWWGG	2 cut(s)	174, 183
EcoT38I	GRGCYC	3 cut(s)	23, 62, 336
ErhI	CCWWGG	2 cut(s)	174, 183
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	3 cut(s)	41, 142, 439
FaiI	YATR	6 cut(s)	39, 140, 327, 437, 510, 527
FatI	CATG	3 cut(s)	37, 138, 435
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	9 cut(s)	46, 49, 73, 76, 79, 82, 85, 88, 155
FriOI	GRGCYC	3 cut(s)	23, 62, 336
Fsp4HI	GCNGC	9 cut(s)	46, 49, 73, 76, 79, 82, 85, 88, 155
FspBI	CTAG	2 cut(s)	354, 393
GluI	GCNGC	9 cut(s)	46, 49, 73, 76, 79, 82, 85, 88, 155
HaeIII	GGCC	3 cut(s)	239, 305, 444
HapII	CCGG	2 cut(s)	23, 340
HgaI	GACGC	2 cut(s)	188, 193
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	41, 142, 439
HpaII	CCGG	2 cut(s)	23, 340
HphI	GGTGA	3 cut(s)	220, 293, 386
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	3 cut(s)	139, 340, 497
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	193, 281
HpyCH4IV	ACGT	2 cut(s)	308, 486
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	9 cut(s)	27, 42, 57, 78, 81, 84, 87, 179, 431
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	2 cut(s)	308, 486
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	41, 142, 439
Kpn2I	TCCGGA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	168, 386, 407, 473
LmnI	GCTCC	2 cut(s)	33, 431
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	2 cut(s)	144, 367
MaeI	CTAG	2 cut(s)	354, 393
MaeII	ACGT	2 cut(s)	308, 486
MaeIII	GTNAC	2 cut(s)	226, 242
MalI	GATC	4 cut(s)	170, 388, 409, 475
MboI	GATC	4 cut(s)	168, 386, 407, 473
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	2 cut(s)	386, 407
MhlI	GDGCHC	3 cut(s)	23, 62, 336
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	2 cut(s)	212, 538
MluNI	TGGCCA	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	8 cut(s)	62, 72, 229, 313, 347, 364, 493, 504
Mox20I	TGGCCA	1 cut(s)	305
MroI	TCCGGA	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	2 cut(s)	23, 340
MspR9I	CCNGG	3 cut(s)	23, 197, 441
Mva1269I	GAATGC	2 cut(s)	206, 427
MvaI	CCWGG	2 cut(s)	197, 441
MwoI	GCNNNNNNNGC	9 cut(s)	27, 42, 57, 78, 81, 84, 87, 179, 431
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	4 cut(s)	168, 386, 407, 473
NlaIII	CATG	3 cut(s)	41, 142, 439
NlaIV	GGNNCC	3 cut(s)	12, 35, 433
NmuCI	GTSAC	2 cut(s)	226, 242
PagI	TCATGA	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	2 cut(s)	206, 427
PflFI	GACNNNGTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	9 cut(s)	47, 50, 74, 77, 80, 83, 86, 89, 156
Psp6I	CCWGG	2 cut(s)	195, 439
PspGI	CCWGG	2 cut(s)	195, 439
PspN4I	GGNNCC	3 cut(s)	12, 35, 433
PspPI	GGNCC	1 cut(s)	443
PsuI	RGATCY	2 cut(s)	386, 407
PsyI	GACNNNGTC	1 cut(s)	191
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SatI	GCNGC	9 cut(s)	46, 49, 73, 76, 79, 82, 85, 88, 155
Sau3AI	GATC	4 cut(s)	168, 386, 407, 473
Sau96I	GGNCC	1 cut(s)	443
ScrFI	CCNGG	3 cut(s)	23, 197, 441
SduI	GDGCHC	3 cut(s)	23, 62, 336
SetI	ASST	5 cut(s)	110, 224, 311, 359, 489
SfaNI	GCATC	2 cut(s)	144, 367
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	2 cut(s)	212, 538
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	2 cut(s)	354, 393
StyD4I	CCNGG	3 cut(s)	21, 195, 439
StyI	CCWWGG	2 cut(s)	174, 183
TaaI	ACNGT	2 cut(s)	193, 281
TaiI	ACGT	2 cut(s)	311, 489
TasI	AATT	2 cut(s)	212, 538
TauI	GCSGC	8 cut(s)	48, 51, 75, 78, 81, 84, 90, 157
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	226, 242
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	2 cut(s)	226, 242
TspDTI	ATGAA	4 cut(s)	54, 155, 205, 455
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	66
XapI	RAATTY	1 cut(s)	212
XspI	CTAG	2 cut(s)	354, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.