Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003710

Physical Location & Seq

Genomic Coordinates Reverse (-)

43290072 .. 43291613

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0314900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGGCTTCTTCCCACCTTGACAGTCGGTGGCACACAACCCCGCCCACCATGGGCGCTTTTGCCCGGAGTTCGCCTCCGATCTGAGGCTGTGTGCCTCTCTTTCCCTTTCTCTGTTGTTTCCCTTCCGTTATGTCTGCTTTGTTTTTCCCTTTCCATCAGTTTTCTTGGTCTATTCCTCTTGTTCCTGTCCCAATCTTTTCCAGATCTACCTTTTTCCCCCTCAAACCCACTGCTATACCGGTGCATCGCTATCTCTGGTGATGCTTATCCTATCCTTTCTGCCATGGCCTGTAAATATGCTCCTCGGAGCTCTGTTCAAAACGGGGTCTGCCCGTTAGTGCACCCGGTGATGCTACAAGAGTCTGAACACCCTTTGGGTGCCTGTCTCTTCGATCCCTTGCTGGATCTCACCTATCTCTCTTTTCAACCAGGTTTTTTGGTTGATTTCTTGGCAGATGAAGGTCTTCTTGTTGAAGATGGTTTGAGTTATATGGCTATAACTTTTGTTTCTGGAAATTTTTCGGATGGGTACTTCGGAATCGCCTTCGAAGCCCTCAATGATCTCTCGATCCGGTTGGATGTTGCTTCTGGTGGCTCTGTTCTCCATGAAGGTGGCGCTGCTGGTTCTTCCTCGTTGACGGCAACTGTGTTGGCTTACCAAGAACGTGGGCTTGCCTGGTTTAGGCCCACTATTGGTATCACACAGGACCAATATTCTATCCGTTTAATCATATTGGTAACAATAGATGTGGAGTTTTATCAATTTTGTGGCGTATCTCAATTCATGTTGCGGTTTGACTGGGTTTCGTCAGCAGTGGTTCTTGTGGTGGAGGCAGCCGAATTAAGTGGTGGTCTCGCCATTATGTCGTCAGAAGCGGCTTATCTTGATTCAGTTATCTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

302

Amino Acids

32.61

Weight (kDa)

4.38

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880
fragaria_vesca	FvH4_7g20270 FvH4_7g20270 FvH4_7g20270 FvH4_7g20270
malus_domestica	MD01G1112400.v1.1 MD07G1180200.v1.1
prunus_persica	Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1
pyrus_communis	pycom01g14090 pycom07g17350
rosa_chinensis	RchiOBHm_Chr1g0364211
rosa_multiflora	Rmu_sc0000071.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292560
rosa_rugosa	Rorug01G0314800 Rorug01G0314900 Rorug01G0315000
rosa_samantha	Rh1AG322200 Rh1BG285000 Rh1CG301500 Rh1DG316400
rosa_wichuraiana	Rw1G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AciI	CCGC	3 cut(s)	43, 793, 878
AclWI	GGATC	3 cut(s)	389, 414, 565
AcsI	RAATTY	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	349
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	4 cut(s)	52, 85, 684, 695
AgeI	ACCGGT	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	320, 428, 476
AjnI	CCWGG	2 cut(s)	430, 677
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw21I	GWGCWC	2 cut(s)	314, 345
Alw26I	GTCTC	2 cut(s)	392, 860
Alw44I	GTGCAC	1 cut(s)	341
AlwI	GGATC	3 cut(s)	389, 414, 565
AoxI	GGCC	2 cut(s)	288, 686
ApaLI	GTGCAC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	620, 836
ApoI	RAATTY	1 cut(s)	517
AsiGI	ACCGGT	1 cut(s)	240
Asp700I	GAANNNNTTC	2 cut(s)	465, 520
AspLEI	GCGC	2 cut(s)	58, 620
AspS9I	GGNCC	2 cut(s)	687, 709
AsuC2I	CCSGG	2 cut(s)	66, 347
AsuHPI	GGTGA	3 cut(s)	272, 361, 403
AsuII	TTCGAA	1 cut(s)	549
AvaII	GGWCC	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	314, 345
BbvI	GCAGC	2 cut(s)	607, 848
BccI	CCATC	3 cut(s)	164, 473, 521
BceAI	ACGGC	1 cut(s)	657
BciT130I	CCWGG	2 cut(s)	432, 679
BcnI	CCSGG	2 cut(s)	66, 347
BcoDI	GTCTC	2 cut(s)	392, 860
BfoI	RGCGCY	2 cut(s)	59, 621
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	3 cut(s)	621, 837, 879
BlsI	GCNGC	3 cut(s)	622, 838, 880
Bme1390I	CCNGG	4 cut(s)	66, 347, 432, 679
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	687, 709
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	4 cut(s)	66, 347, 432, 679
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	3 cut(s)	253, 255, 342
BmuI	ACTGGG	1 cut(s)	811
BpiI	GAAGAC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
Bpu14I	TTCGAA	1 cut(s)	549
BpuMI	CCSGG	2 cut(s)	66, 347
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	50, 285, 305
BsaWI	WCCGGW	2 cut(s)	240, 573
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 85, 684, 695
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	806
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	432, 679
BseDI	CCNNGG	3 cut(s)	50, 285, 305
BseGI	GGATG	2 cut(s)	532, 586
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	4 cut(s)	52, 85, 684, 695
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	607, 848
BshFI	GGCC	2 cut(s)	290, 688
BshNI	GGYRCC	1 cut(s)	380
BshTI	ACCGGT	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	314, 345
BsiSI	CCGG	4 cut(s)	66, 241, 347, 574
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	4 cut(s)	52, 85, 684, 695
BsmAI	GTCTC	2 cut(s)	392, 860
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	290, 688
Bso31I	GGTCTC	1 cut(s)	860
Bsp119I	TTCGAA	1 cut(s)	549
Bsp1286I	GDGCHC	2 cut(s)	314, 345
Bsp143I	GATC	6 cut(s)	80, 205, 394, 406, 562, 570
Bsp19I	CCATGG	2 cut(s)	50, 285
BspACI	CCGC	3 cut(s)	43, 793, 878
BspANI	GGCC	2 cut(s)	290, 688
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	3 cut(s)	389, 414, 565
BspT104I	TTCGAA	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	860
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	806
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	3 cut(s)	50, 285, 305
BssMI	GATC	6 cut(s)	80, 205, 394, 406, 562, 570
BssT1I	CCWWGG	2 cut(s)	50, 285
Bst2UI	CCWGG	2 cut(s)	432, 679
Bst4CI	ACNGT	2 cut(s)	25, 649
Bst6I	CTCTTC	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	2 cut(s)	50, 285
BstENI	CCTNNNNNAGG	1 cut(s)	682
BstF5I	GGATG	2 cut(s)	532, 586
BstH2I	RGCGCY	2 cut(s)	59, 621
BstHHI	GCGC	2 cut(s)	58, 620
BstKTI	GATC	6 cut(s)	83, 208, 397, 409, 565, 573
BstMAI	GTCTC	2 cut(s)	392, 860
BstMBI	GATC	6 cut(s)	80, 205, 394, 406, 562, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	432, 679
BstSCI	CCNGG	4 cut(s)	64, 345, 430, 677
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	607, 848
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	2 cut(s)	205, 406
BstXI	CCANNNNNNTGG	2 cut(s)	614, 668
BstYI	RGATCY	2 cut(s)	205, 406
BsuRI	GGCC	2 cut(s)	290, 688
BtgI	CCRYGG	2 cut(s)	50, 285
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	532, 586
BtsI	GCAGTG	2 cut(s)	230, 822
BtsIMutI	CAGTG	2 cut(s)	230, 822
Cac8I	GCNNGC	1 cut(s)	675
CfoI	GCGC	2 cut(s)	58, 620
Cfr10I	RCCGGY	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	687, 709
CsiI	ACCWGGT	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	532
CspAI	ACCGGT	1 cut(s)	240
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	4 cut(s)	51, 286, 608, 787
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	6 cut(s)	82, 207, 396, 408, 564, 572
DpnII	GATC	6 cut(s)	80, 205, 394, 406, 562, 570
DraIII	CACNNNGTG	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	50, 285
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	860
Eco47I	GGWCC	1 cut(s)	709
Eco53kI	GAGCTC	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	430, 677
EcoT14I	CCWWGG	2 cut(s)	50, 285
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	2 cut(s)	50, 285
FaeI	CATG	4 cut(s)	54, 289, 611, 790
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	4 cut(s)	50, 285, 607, 786
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	621, 837, 879
FokI	GGATG	2 cut(s)	539, 593
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	621, 837, 879
GlaI	GCGC	2 cut(s)	57, 619
GluI	GCNGC	3 cut(s)	621, 837, 879
HaeII	RGCGCY	2 cut(s)	59, 621
HaeIII	GGCC	2 cut(s)	290, 688
HapII	CCGG	4 cut(s)	66, 241, 347, 574
HhaI	GCGC	2 cut(s)	58, 620
Hin1II	CATG	4 cut(s)	54, 289, 611, 790
Hin6I	GCGC	2 cut(s)	56, 618
HinP1I	GCGC	2 cut(s)	56, 618
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HinfI	GANTC	3 cut(s)	362, 540, 890
HpaII	CCGG	4 cut(s)	66, 241, 347, 574
HphI	GGTGA	3 cut(s)	272, 361, 403
Hpy166II	GTNNAC	2 cut(s)	343, 639
Hpy188I	TCNGA	7 cut(s)	80, 85, 309, 367, 526, 539, 874
Hpy188III	TCNNGA	4 cut(s)	203, 513, 568, 887
Hpy8I	GTNNAC	2 cut(s)	343, 639
HpyAV	CCTTC	4 cut(s)	134, 455, 556, 605
HpyCH4III	ACNGT	2 cut(s)	25, 649
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	2 cut(s)	246, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	4 cut(s)	54, 289, 611, 790
HspAI	GCGC	2 cut(s)	56, 618
Kzo9I	GATC	6 cut(s)	80, 205, 394, 406, 562, 570
LmnI	GCTCC	2 cut(s)	307, 309
Lsp1109I	GCAGC	2 cut(s)	607, 848
LweI	GCATC	3 cut(s)	253, 255, 342
MabI	ACCWGGT	1 cut(s)	430
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	6 cut(s)	82, 207, 396, 408, 564, 572
MboI	GATC	6 cut(s)	80, 205, 394, 406, 562, 570
MboII	GAAGA	4 cut(s)	382, 458, 488, 621
MflI	RGATCY	2 cut(s)	205, 406
MhlI	GDGCHC	2 cut(s)	314, 345
MluCI	AATT	4 cut(s)	517, 764, 782, 842
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	9 cut(s)	79, 86, 107, 188, 232, 315, 566, 643, 826
MroXI	GAANNNNTTC	2 cut(s)	465, 520
MseI	TTAA	2 cut(s)	728, 845
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	4 cut(s)	66, 241, 347, 574
MspR9I	CCNGG	4 cut(s)	66, 347, 432, 679
MvaI	CCWGG	2 cut(s)	432, 679
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	2 cut(s)	66, 347
NcoI	CCATGG	2 cut(s)	50, 285
NdeII	GATC	6 cut(s)	80, 205, 394, 406, 562, 570
NlaIII	CATG	4 cut(s)	54, 289, 611, 790
NlaIV	GGNNCC	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	549
PdmI	GAANNNNTTC	2 cut(s)	465, 520
PfeI	GAWTC	2 cut(s)	540, 890
PinAI	ACCGGT	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	622, 838, 880
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	430, 677
PspGI	CCWGG	2 cut(s)	430, 677
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	687, 709
PsuI	RGATCY	2 cut(s)	205, 406
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	728, 845
SatI	GCNGC	3 cut(s)	621, 837, 879
Sau3AI	GATC	6 cut(s)	80, 205, 394, 406, 562, 570
Sau96I	GGNCC	2 cut(s)	687, 709
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	66, 347, 432, 679
SduI	GDGCHC	2 cut(s)	314, 345
SetI	ASST	8 cut(s)	20, 214, 314, 416, 436, 466, 616, 670
SexAI	ACCWGGT	1 cut(s)	430
SfaNI	GCATC	3 cut(s)	253, 255, 342
SfuI	TTCGAA	1 cut(s)	549
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	4 cut(s)	517, 764, 782, 842
SsiI	CCGC	3 cut(s)	43, 793, 878
SspI	AATATT	1 cut(s)	716
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	4 cut(s)	64, 345, 430, 677
StyI	CCWWGG	2 cut(s)	50, 285
TaaI	ACNGT	2 cut(s)	25, 649
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	393, 549, 569
TasI	AATT	4 cut(s)	517, 764, 782, 842
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	2 cut(s)	540, 890
Tru1I	TTAA	2 cut(s)	728, 845
Tru9I	TTAA	2 cut(s)	728, 845
TscAI	CASTG	2 cut(s)	237, 822
TseI	GCWGC	2 cut(s)	620, 836
TspDTI	ATGAA	3 cut(s)	474, 624, 775
TspGWI	ACGGA	2 cut(s)	117, 713
TspRI	CASTG	2 cut(s)	237, 822
VneI	GTGCAC	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	709
XagI	CCTNNNNNAGG	1 cut(s)	682
XapI	RAATTY	1 cut(s)	517
XmnI	GAANNNNTTC	2 cut(s)	465, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.