Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003710

Physical Location & Seq

Genomic Coordinates Reverse (-)

14361322 .. 14363786

Gene Structure 2465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14090.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGGAGGCACCGACGAGTCCGGCCGGCGGGAGCCACGAGAGCGGCGGCGAGCAGAGCCCCCAGGGAGGAGGAGGAGGAGGCGGCGGCGGCGTCAGGGAGCAGGATAGGTATTTGCCAATCGCCAACATCAGTCGCATCATGAAGAAGGCTCTGCCGACTAACGGCAAGATCGCCAAGGACGCCAAGGACACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCGTCACCAGCGAGGCCAGCGATAAGTGCCAGAAGGAGAAGCGGAAGACCATCAACGGCGACGATTTGTTGTGGGCGATGGCCACGTTAGGGTTTGAGGACTATATCGAGCCCCTCAGGATTTACTTGGCTAGGTACAGGGAGGGTGATGCAAAGGGGTCTGCTAGGGGTGGAGATGGTTCTTCAAAAGGGAATGCTGTTCCAGCAATGCCTGGCCCAAGTGCACAGTTTGTTCATCAGGGAGCATTGAATTATGGCAACCCTCAAGAGGATTATTATGTGCCATTGAACAATATGGGTAATGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

179

Amino Acids

18.74

Weight (kDa)

5.45

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880
fragaria_vesca	FvH4_7g20270 FvH4_7g20270 FvH4_7g20270 FvH4_7g20270
malus_domestica	MD01G1112400.v1.1 MD07G1180200.v1.1
prunus_persica	Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1
pyrus_communis	pycom01g14090 pycom07g17350
rosa_chinensis	RchiOBHm_Chr1g0364211
rosa_multiflora	Rmu_sc0000071.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292560
rosa_rugosa	Rorug01G0314800 Rorug01G0314900 Rorug01G0315000
rosa_samantha	Rh1AG322200 Rh1BG285000 Rh1CG301500 Rh1DG316400
rosa_wichuraiana	Rw1G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	8 cut(s)	5, 30, 45, 48, 84, 87, 90, 268
AcoI	YGGCCR	2 cut(s)	24, 306
AcsI	RAATTY	1 cut(s)	215
AcyI	GRCGYC	2 cut(s)	93, 183
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	5 cut(s)	29, 68, 164, 315, 493
AgsI	TTSAA	3 cut(s)	411, 475, 514
AjnI	CCWGG	3 cut(s)	63, 198, 436
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	214
Alw44I	GTGCAC	1 cut(s)	447
AoxI	GGCC	4 cut(s)	24, 240, 306, 439
ApaLI	GTGCAC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	223, 383
AxyI	CCTNAGG	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	2 cut(s)	62, 339
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	3 cut(s)	284, 298, 395
BceAI	ACGGC	2 cut(s)	181, 298
BciT130I	CCWGG	3 cut(s)	65, 200, 438
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	357, 390
BisI	GCNGC	5 cut(s)	46, 49, 85, 88, 91
BlsI	GCNGC	5 cut(s)	47, 50, 86, 89, 92
Bme1390I	CCNGG	3 cut(s)	65, 200, 438
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	12, 35
BmrFI	CCNGG	3 cut(s)	65, 200, 438
BmsI	GCATC	2 cut(s)	147, 364
BpiI	GAAGAC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	474
BsaHI	GRCGYC	2 cut(s)	93, 183
BsaJI	CCNNGG	4 cut(s)	63, 64, 177, 186
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 68, 164, 315, 493
Bse118I	RCCGGY	1 cut(s)	26
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	65, 200, 438
BseDI	CCNNGG	4 cut(s)	63, 64, 177, 186
BseLI	CCNNNNNNNGG	5 cut(s)	29, 68, 164, 315, 493
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	355
BseRI	GAGGAG	4 cut(s)	84, 87, 90, 93
BseSI	GKGCMC	1 cut(s)	451
BseX3I	CGGCCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	4 cut(s)	26, 242, 308, 441
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	23, 27
BslI	CCNNNNNNNGG	5 cut(s)	29, 68, 164, 315, 493
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsmI	GAATGC	2 cut(s)	209, 424
BsnI	GGCC	4 cut(s)	26, 242, 308, 441
Bsp1286I	GDGCHC	3 cut(s)	62, 339, 451
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	8 cut(s)	5, 30, 45, 48, 84, 87, 90, 268
BspANI	GGCC	4 cut(s)	26, 242, 308, 441
BspCNI	CTCAG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	12, 35
BspT107I	GGYRCC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	4 cut(s)	63, 64, 177, 186
BssMI	GATC	1 cut(s)	171
BssNI	GRCGYC	2 cut(s)	93, 183
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	177, 186
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	3 cut(s)	65, 200, 438
Bst4CI	ACNGT	2 cut(s)	196, 453
BstACI	GRCGYC	2 cut(s)	93, 183
BstC8I	GCNNGC	3 cut(s)	28, 53, 244
BstDEI	CTNAG	1 cut(s)	341
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	171
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 57, 90, 182, 243, 252, 428
BstNI	CCWGG	3 cut(s)	65, 200, 438
BstSCI	CCNGG	3 cut(s)	63, 198, 436
BstSLI	GKGCMC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	278
BstZI	CGGCCG	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	4 cut(s)	26, 242, 308, 441
BtgZI	GCGATG	1 cut(s)	317
Cac8I	GCNNGC	3 cut(s)	28, 53, 244
CciI	TCATGA	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	440
CseI	GACGC	3 cut(s)	82, 191, 196
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	142
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	2 cut(s)	24, 306
EagI	CGGCCG	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	177, 186
Eco24I	GRGCYC	2 cut(s)	62, 339
Eco52I	CGGCCG	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	3 cut(s)	63, 198, 436
EcoT14I	CCWWGG	2 cut(s)	177, 186
EcoT38I	GRGCYC	2 cut(s)	62, 339
ErhI	CCWWGG	2 cut(s)	177, 186
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	145
FaiI	YATR	5 cut(s)	143, 330, 480, 504, 521
FatI	CATG	1 cut(s)	141
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	5 cut(s)	46, 49, 85, 88, 91
FriOI	GRGCYC	2 cut(s)	62, 339
Fsp4HI	GCNGC	5 cut(s)	46, 49, 85, 88, 91
FspBI	CTAG	2 cut(s)	357, 390
GluI	GCNGC	5 cut(s)	46, 49, 85, 88, 91
HaeIII	GGCC	4 cut(s)	26, 242, 308, 441
HapII	CCGG	2 cut(s)	23, 27
HgaI	GACGC	3 cut(s)	82, 191, 196
Hin1I	GRCGYC	2 cut(s)	93, 183
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	23, 27
HphI	GGTGA	2 cut(s)	223, 383
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	3 cut(s)	142, 343, 491
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	2 cut(s)	19, 290
HpyAV	CCTTC	2 cut(s)	142, 253
HpyCH4III	ACNGT	2 cut(s)	196, 453
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	2 cut(s)	377, 449
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 57, 90, 182, 243, 252, 428
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	311
Hsp92I	GRCGYC	2 cut(s)	93, 183
Hsp92II	CATG	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	33, 100, 467
LweI	GCATC	2 cut(s)	147, 364
MaeI	CTAG	2 cut(s)	357, 390
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	173
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	157, 283, 399
MhlI	GDGCHC	3 cut(s)	62, 339, 451
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	215, 475
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	28
Mox20I	TGGCCA	1 cut(s)	308
MroNI	GCCGGC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	2 cut(s)	23, 27
MspR9I	CCNGG	3 cut(s)	65, 200, 438
Mva1269I	GAATGC	2 cut(s)	209, 424
MvaI	CCWGG	3 cut(s)	65, 200, 438
MwoI	GCNNNNNNNGC	7 cut(s)	42, 57, 90, 182, 243, 252, 428
NaeI	GCCGGC	1 cut(s)	28
NdeII	GATC	1 cut(s)	171
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	2 cut(s)	12, 35
NmuCI	GTSAC	1 cut(s)	229
PagI	TCATGA	1 cut(s)	141
PasI	CCCWGGG	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	2 cut(s)	209, 424
PdiI	GCCGGC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	5 cut(s)	47, 50, 86, 89, 92
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	3 cut(s)	63, 198, 436
PspGI	CCWGG	3 cut(s)	63, 198, 436
PspN4I	GGNNCC	2 cut(s)	12, 35
PspPI	GGNCC	1 cut(s)	440
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	5 cut(s)	46, 49, 85, 88, 91
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	65, 200, 438
SduI	GDGCHC	3 cut(s)	62, 339, 451
SetI	ASST	4 cut(s)	113, 227, 314, 362
SfaNI	GCATC	2 cut(s)	147, 364
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	2 cut(s)	215, 475
SsiI	CCGC	8 cut(s)	5, 30, 45, 48, 84, 87, 90, 268
SspMI	CTAG	2 cut(s)	357, 390
StyD4I	CCNGG	3 cut(s)	63, 198, 436
StyI	CCWWGG	2 cut(s)	177, 186
TaaI	ACNGT	2 cut(s)	196, 453
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	333
TasI	AATT	2 cut(s)	215, 475
TauI	GCSGC	5 cut(s)	48, 51, 87, 90, 93
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	158, 208, 449
Tth111I	GACNNNGTC	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	447
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	2 cut(s)	357, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.