pycom07g17350

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003710
Physical Location & Seq
Reverse (-)
19866868 .. 19867224
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17350.1

Sequence Viewer

Length: 243 bp
ATGAAGAAGGCTCTGCCGACCAACGGAAAGATCGCCAAGGACGCCAAGGACACCGTCCAGGAATGCGTCTCCGAATTCATCAGCTTCGTCACCAGCGAGGCAAGCGATAAGTGCCAGAAGGAGAAGCGGAAGACCATCAATGGCGACGATTTGTTGTGGGCGATGGCCACGTTAGGGTTTGAGGACTATATCGAGCCCCTCAGGATTTACTTGAGTAGGTACAGGGAGGTACAAATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04612 ko05152 ko05166 map04612 map05152 map05166
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

81

Amino Acids

9.18

Weight (kDa)

6.24

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 1 - 55 4.6e-22 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 221, 231
AfiI CCNNNNNNNGG 2 cut(s) 23, 174
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 73
AoxI GGCC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 82
AxyI CCTNAGG 1 cut(s) 200
BalI TGGCCA 1 cut(s) 167
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 137
BccI CCATC 2 cut(s) 143, 157
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 36, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 174
Bse21I CCTNAGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 36, 45
BseLI CCNNNNNNNGG 2 cut(s) 23, 174
BseMII CTCAG 1 cut(s) 214
BshFI GGCC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 23, 174
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 36, 45
BssMI GATC 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 2 cut(s) 36, 45
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 200
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 3 cut(s) 41, 102, 111
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 137
Bsu36I CCTNAGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 103
CseI GACGC 2 cut(s) 50, 55
Csp6I GTAC 2 cut(s) 220, 230
CviJI RGCY 4 cut(s) 11, 84, 167, 196
CviKI_1 RGCY 4 cut(s) 11, 84, 167, 196
CviQI GTAC 2 cut(s) 220, 230
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 36, 45
Eco24I GRGCYC 1 cut(s) 198
Eco81I CCTNAGG 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 36, 45
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 36, 45
Esp3I CGTCTC 1 cut(s) 73
FaiI YATR 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 167
HgaI GACGC 2 cut(s) 50, 55
Hin1I GRCGYC 1 cut(s) 42
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 102, 111
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 6 cut(s) 44, 71, 106, 128, 187, 208
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 16, 142
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 74, 234
MluNI TGGCCA 1 cut(s) 167
MnlI CCTC 4 cut(s) 91, 175, 209, 220
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 1 cut(s) 241
Msp20I TGGCCA 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 41, 102, 111
NdeII GATC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 68
PflFI GACNNNGTC 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 2 cut(s) 221, 231
RsaNI GTAC 2 cut(s) 220, 230
SaqAI TTAA 1 cut(s) 241
Sau3AI GATC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 198
SetI ASST 4 cut(s) 86, 173, 221, 231
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 2 cut(s) 74, 234
SsiI CCGC 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 2 cut(s) 36, 45
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 192
TasI AATT 2 cut(s) 74, 234
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 17, 67
TspGWI ACGGA 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 53
XapI RAATTY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.