Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000071.1

Orthogroup ID

OG0003710

Physical Location & Seq

Genomic Coordinates Forward (+)

10351 .. 14777

Gene Structure 4427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000071.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ctgtggtccttgccggatcgggtcctcgggtccagcggcgagttgaggctgctgaacttgcaatggtttgccgcatttgagaaccagatgaagaagaagctagagaggtctagggtgagcttctccgacgagttggatccgacggagtcggaggggaagaggaagaacacagcgatggagagggggaggaaagcgacggtggtggatatacaaagggaatttctctccaaaacgcgcgaaatacaaacccaccgcctctctctctacacagggattgttctgataatggcggaggcaccgacgagtccggccggcgggagccacgagagcggcggcgagcagagcccgcagaacgggagcagcagcaacgtgagggagcaggacaggtacctcccaatcgcgaacatcagtcggattatgaagaaggcgctgccgcaaaacggcaagatcgccaaggacgctaaggacactgttcaggaatgcgtctccgaattcatcagcttcgtcaccagcgaggccagcgataagtgccagaaggagaagaggaagacgattaacggtgacgatttgctgtgggcgatggctacgttagggtttgaggactatattgagccgctcaggatttacttggctaggtacagggagttggagggtgatgcaaagggttctgcaaggggtggagaagggtctgctaaagggaatcctgttggagctatgactgggcaaaattcacagtttgttcatcagccaccactgaactacgtcaataaccaagaggattattatgtgcctttgaacaatatggggaatggaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

272

Amino Acids

30.29

Weight (kDa)

7.04

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880 AT2G38880
fragaria_vesca	FvH4_7g20270 FvH4_7g20270 FvH4_7g20270 FvH4_7g20270
malus_domestica	MD01G1112400.v1.1 MD07G1180200.v1.1
prunus_persica	Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1 Prupe.2G219500_v2.0.a1
pyrus_communis	pycom01g14090 pycom07g17350
rosa_chinensis	RchiOBHm_Chr1g0364211
rosa_multiflora	Rmu_sc0000071.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292560
rosa_rugosa	Rorug01G0314800 Rorug01G0314900 Rorug01G0315000
rosa_samantha	Rh1AG322200 Rh1BG285000 Rh1CG301500 Rh1DG316400
rosa_wichuraiana	Rw1G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	2 cut(s)	295, 387
AccBSI	CCGCTC	2 cut(s)	330, 616
AccII	CGCG	3 cut(s)	235, 237, 401
AclWI	GGATC	3 cut(s)	24, 131, 144
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	3 cut(s)	218, 491, 727
AfaI	GTAC	2 cut(s)	389, 638
AfiI	CCNNNNNNNGG	3 cut(s)	314, 353, 440
AgsI	TTSAA	1 cut(s)	796
AluBI	AGCT	4 cut(s)	100, 120, 501, 713
AluI	AGCT	4 cut(s)	100, 120, 501, 713
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	3 cut(s)	24, 131, 144
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	309, 516
ApeKI	GCWGC	4 cut(s)	49, 360, 363, 430
ApoI	RAATTY	3 cut(s)	218, 491, 727
Asp718I	GGTACC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	237, 430
AspS9I	GGNCC	3 cut(s)	6, 22, 30
AsuHPI	GGTGA	4 cut(s)	127, 499, 572, 665
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	3 cut(s)	6, 22, 30
BamHI	GGATCC	1 cut(s)	136
BanI	GGYRCC	2 cut(s)	295, 387
BanII	GRGCYC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	4 cut(s)	36, 372, 375, 417
BccI	CCATC	2 cut(s)	169, 574
BceAI	ACGGC	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	490
BfaI	CTAG	3 cut(s)	101, 111, 633
BfoI	RGCGCY	1 cut(s)	431
Bme18I	GGWCC	3 cut(s)	6, 22, 30
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	6, 22, 30
BmiI	GGNNCC	6 cut(s)	23, 31, 138, 297, 320, 389
BmrI	ACTGGG	1 cut(s)	729
BmsI	GCATC	1 cut(s)	646
BmuI	ACTGGG	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	554
Bpu10I	CCTNAGC	2 cut(s)	462, 617
BsaJI	CCNNGG	2 cut(s)	25, 453
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 353, 440
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	25, 453
BseLI	CCNNNNNNNGG	3 cut(s)	314, 353, 440
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	631
BseNI	ACTGG	1 cut(s)	724
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	4 cut(s)	36, 372, 375, 417
Bsh1236I	CGCG	3 cut(s)	235, 237, 401
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	311, 518
BshNI	GGYRCC	2 cut(s)	295, 387
BsiEI	CGRYCG	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	14, 308, 312
BslI	CCNNNNNNNGG	3 cut(s)	314, 353, 440
BsmAI	GTCTC	1 cut(s)	490
BsmBI	CGTCTC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	311, 518
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	16, 136, 447
Bsp68I	TCGCGA	1 cut(s)	401
BspANI	GGCC	2 cut(s)	311, 518
BspCNI	CTCAG	1 cut(s)	630
BspFNI	CGCG	3 cut(s)	235, 237, 401
BspLI	GGNNCC	6 cut(s)	23, 31, 138, 297, 320, 389
BspPI	GGATC	3 cut(s)	24, 131, 144
BspT107I	GGYRCC	2 cut(s)	295, 387
BsrBI	CCGCTC	2 cut(s)	330, 616
BsrDI	GCAATG	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	25, 453
BssMI	GATC	3 cut(s)	16, 136, 447
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	323
Bst4CI	ACNGT	4 cut(s)	199, 472, 560, 735
Bst6I	CTCTTC	2 cut(s)	152, 536
BstC8I	GCNNGC	4 cut(s)	313, 338, 347, 520
BstDEI	CTNAG	2 cut(s)	462, 617
BstFNI	CGCG	3 cut(s)	235, 237, 401
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	2 cut(s)	237, 430
BstKTI	GATC	3 cut(s)	19, 139, 450
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	3 cut(s)	16, 136, 447
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 327, 342, 346, 458, 519, 528
BstUI	CGCG	3 cut(s)	235, 237, 401
BstV1I	GCAGC	4 cut(s)	36, 372, 375, 417
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	311, 518
BtgZI	GCGATG	2 cut(s)	188, 593
BtsIMutI	CAGTG	2 cut(s)	468, 752
BtuMI	TCGCGA	1 cut(s)	401
Cac8I	GCNNGC	4 cut(s)	313, 338, 347, 520
CfoI	GCGC	2 cut(s)	237, 430
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	6, 22, 30
CseI	GACGC	2 cut(s)	467, 472
Csp6I	GTAC	2 cut(s)	388, 637
CviQI	GTAC	2 cut(s)	388, 637
DdeI	CTNAG	2 cut(s)	462, 617
DpnI	GATC	3 cut(s)	18, 138, 449
DpnII	GATC	3 cut(s)	16, 136, 447
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	152, 536
EarI	CTCTTC	2 cut(s)	152, 536
EciI	GGCGGA	1 cut(s)	305
EclXI	CGGCCG	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	3 cut(s)	6, 22, 30
Eco52I	CGGCCG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	490
FaiI	YATR	6 cut(s)	209, 419, 606, 716, 786, 803
FauI	CCCGC	2 cut(s)	308, 354
FriOI	GRGCYC	1 cut(s)	347
FspBI	CTAG	3 cut(s)	101, 111, 633
GlaI	GCGC	2 cut(s)	236, 429
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	311, 518
HapII	CCGG	3 cut(s)	14, 308, 312
HgaI	GACGC	2 cut(s)	467, 472
HhaI	GCGC	2 cut(s)	237, 430
Hin6I	GCGC	2 cut(s)	235, 428
HinP1I	GCGC	2 cut(s)	235, 428
HinfI	GANTC	3 cut(s)	146, 304, 700
HpaII	CCGG	3 cut(s)	14, 308, 312
HphI	GGTGA	4 cut(s)	127, 499, 572, 665
Hpy188I	TCNGA	6 cut(s)	127, 141, 151, 282, 414, 490
Hpy188III	TCNNGA	3 cut(s)	400, 476, 619
Hpy99I	CGWCG	4 cut(s)	131, 145, 199, 304
HpyAV	CCTTC	3 cut(s)	418, 529, 677
HpyCH4III	ACNGT	4 cut(s)	199, 472, 560, 735
HpyCH4IV	ACGT	3 cut(s)	369, 587, 762
HpyCH4V	TGCA	3 cut(s)	61, 659, 671
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 327, 342, 346, 458, 519, 528
HpyF3I	CTNAG	2 cut(s)	462, 617
HpySE526I	ACGT	3 cut(s)	369, 587, 762
HspAI	GCGC	2 cut(s)	235, 428
KpnI	GGTACC	1 cut(s)	391
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	16, 136, 447
LmnI	GCTCC	4 cut(s)	318, 357, 376, 710
Lsp1109I	GCAGC	4 cut(s)	36, 372, 375, 417
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	3 cut(s)	101, 111, 633
MaeII	ACGT	3 cut(s)	369, 587, 762
MaeIII	GTNAC	2 cut(s)	505, 560
MalI	GATC	3 cut(s)	18, 138, 449
MbiI	CCGCTC	2 cut(s)	330, 616
MboI	GATC	3 cut(s)	16, 136, 447
MboII	GAAGA	7 cut(s)	103, 106, 169, 175, 433, 553, 559
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	4 cut(s)	218, 491, 727, 814
MlyI	GAGTC	2 cut(s)	155, 313
MmeI	TCCRAC	7 cut(s)	114, 129, 150, 164, 392, 627, 688
MroNI	GCCGGC	1 cut(s)	311
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	36
MspI	CCGG	3 cut(s)	14, 308, 312
Mva1269I	GAATGC	1 cut(s)	485
MvnI	CGCG	3 cut(s)	235, 237, 401
MwoI	GCNNNNNNNGC	7 cut(s)	58, 327, 342, 346, 458, 519, 528
NaeI	GCCGGC	1 cut(s)	313
NdeII	GATC	3 cut(s)	16, 136, 447
NgoMIV	GCCGGC	1 cut(s)	311
NlaIV	GGNNCC	6 cut(s)	23, 31, 138, 297, 320, 389
NmuCI	GTSAC	2 cut(s)	505, 560
NruI	TCGCGA	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PctI	GAATGC	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	700
PflFI	GACNNNGTC	1 cut(s)	145
PleI	GAGTC	2 cut(s)	154, 312
PpsI	GAGTC	2 cut(s)	154, 312
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
PspN4I	GGNNCC	6 cut(s)	23, 31, 138, 297, 320, 389
PspPI	GGNCC	3 cut(s)	6, 22, 30
PspPPI	RGGWCCY	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	136
PsyI	GACNNNGTC	1 cut(s)	145
RruI	TCGCGA	1 cut(s)	401
RsaI	GTAC	2 cut(s)	389, 638
RsaNI	GTAC	2 cut(s)	388, 637
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	555
Sau3AI	GATC	3 cut(s)	16, 136, 447
Sau96I	GGNCC	3 cut(s)	6, 22, 30
SchI	GAGTC	2 cut(s)	155, 313
SduI	GDGCHC	1 cut(s)	347
SfaNI	GCATC	1 cut(s)	646
SinI	GGWCC	3 cut(s)	6, 22, 30
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	218, 491, 727, 814
SspMI	CTAG	3 cut(s)	101, 111, 633
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	4 cut(s)	199, 472, 560, 735
TaiI	ACGT	3 cut(s)	372, 590, 765
TasI	AATT	4 cut(s)	218, 491, 727, 814
TauI	GCSGC	6 cut(s)	39, 74, 333, 336, 436, 616
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	2 cut(s)	475, 759
TseFI	GTSAC	2 cut(s)	505, 560
TseI	GCWGC	4 cut(s)	49, 360, 363, 430
Tsp45I	GTSAC	2 cut(s)	505, 560
TspDTI	ATGAA	4 cut(s)	104, 434, 484, 731
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	475, 759
Tth111I	GACNNNGTC	1 cut(s)	145
VpaK11BI	GGWCC	3 cut(s)	6, 22, 30
XapI	RAATTY	3 cut(s)	218, 491, 727
XspI	CTAG	3 cut(s)	101, 111, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.