Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Reverse (-)

16248146 .. 16251017

Gene Structure 2872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGTTTGGTGAGACGTTCACGGAATATCTACATGGAGAAGAGGAATGGTTCCTGGAGAAGTGTCGCTTCGTTGAATATAAGAAACTTAAGAAAGTGTTGAAGAAGTGCAAGACATGTAACTCTACAAAATCTGATGATGGACAAATCATCCCATCTGCTACTTCTTCATCTTTGTCTGATTCATGCGAATGCAAAGCTTGCCCTTGGTGTGATCAGATGTTCTTCGAGGAGCTGATGAAAGAAGCTACTGACATAGCGGGATTTTTCAGGTCAAGAGTGAGGCATCTTCTCCATCTTCATGTAGCCACTGGGATGCAGAGATACATGATTCGCCTACGCAGATGCTTCACTGACGAAAAACAAGCTTTAGTCCAAGAGGGCCAAATCTTGATTCAATACATCACCATGAATGCAATTGCTATCCGTAAAATCCTCAAGAAATATGACAAGGTGCATAGCTCAGAGAATGGGAAGAATTTCAAGTTGAAAATGCGAGCGGAGCGCATAGAGCTCTTGCACTCACCATGGCTCATAGAACTTGGAGCCTTTTATCTCAACTCTGGGCTAGATAATGTTGGAAACTTCAAGAATTCGTTTGGCCGTGTCGCTTGTGAAAATCTCAACGAAGATCAACCAGTGCTAAAACTCATGCTGCCTAACTCAATAGAGCTGGAGTATGATCTAACTTGTGCAATCTGCCTCGAAACGGTATTCAATCCCTATGCTTTAAAGTGCGGTCACATATTTTGTAACTCGTGTGCATGCTCGGCTGCTTCTGTATTGATTTTCCAAGGCATTAAAGCAGCGCCCCGACATTCAAAATGTCCCATCTGCAGAGAGGCTGGAGTTTACGCGGAAGCAGTTCACATGATCGAGCTGCATCTTCTTTTAAAGACACGAAGCAAAGAATATTGGAAGGAGAGGATGATGAATGAACGGTCTGAGATGGTGAAGCAGTCGAAGATGTTTTGGAATGAACAGACGAAGCATATGATCGGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

335

Amino Acids

38.86

Weight (kDa)

8.65

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RING_XB3-XBAT31	PF24921	230 - 281	5.3e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-RING_UBOX	PF13445	231 - 255	2.3e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	500
AccII	CGCG	1 cut(s)	857
AciI	CCGC	4 cut(s)	260, 500, 738, 857
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	2 cut(s)	478, 592
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflII	CTTAAG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	8 cut(s)	77, 103, 398, 484, 490, 589, 718, 822
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	8 cut(s)	200, 235, 248, 368, 462, 514, 673, 880
AluI	AGCT	8 cut(s)	200, 235, 248, 368, 462, 514, 673, 880
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	382, 601
ApeKI	GCWGC	4 cut(s)	655, 773, 806, 880
ApoI	RAATTY	2 cut(s)	478, 592
Asp700I	GAANNNNTTC	2 cut(s)	479, 864
AspLEI	GCGC	2 cut(s)	507, 811
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	4 cut(s)	23, 397, 516, 964
BanII	GRGCYC	1 cut(s)	516
BauI	CACGAG	1 cut(s)	757
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	4 cut(s)	642, 760, 818, 867
BccI	CCATC	5 cut(s)	134, 163, 303, 839, 943
BceAI	ACGGC	1 cut(s)	588
BciT130I	CCWGG	1 cut(s)	56
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	835
BfoI	RGCGCY	1 cut(s)	812
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	4 cut(s)	656, 774, 807, 881
BlsI	GCNGC	4 cut(s)	657, 775, 808, 882
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	53, 547
BmrFI	CCNGG	1 cut(s)	56
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	4 cut(s)	295, 306, 335, 892
BmuI	ACTGGG	1 cut(s)	321
BpmI	CTGGAG	3 cut(s)	77, 695, 867
BpuEI	CTTGAG	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	206, 527, 793
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	2 cut(s)	316, 638
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	206, 527, 793
BseGI	GGATG	3 cut(s)	150, 321, 933
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	477, 936
BseNI	ACTGG	2 cut(s)	316, 638
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	4 cut(s)	642, 760, 818, 867
Bsh1236I	CGCG	1 cut(s)	857
BshFI	GGCC	2 cut(s)	384, 603
BsiHKAI	GWGCWC	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	813
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	1 cut(s)	8
BsmBI	CGTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	813
BsmI	GAATGC	2 cut(s)	197, 418
BsnI	GGCC	2 cut(s)	384, 603
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	5 cut(s)	214, 631, 682, 873, 996
Bsp19I	CCATGG	1 cut(s)	527
BspACI	CCGC	4 cut(s)	260, 500, 738, 857
BspANI	GGCC	2 cut(s)	384, 603
BspCNI	CTCAG	2 cut(s)	476, 937
BspFNI	CGCG	1 cut(s)	857
BspLI	GGNNCC	2 cut(s)	53, 547
BspMAI	CTGCAG	1 cut(s)	839
BspTI	CTTAAG	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	316, 638
BssECI	CCNNGG	3 cut(s)	206, 527, 793
BssMI	GATC	5 cut(s)	214, 631, 682, 873, 996
BssSI	CACGAG	1 cut(s)	757
BssT1I	CCWWGG	3 cut(s)	206, 527, 793
Bst2BI	CACGAG	1 cut(s)	757
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	712, 942
Bst6I	CTCTTC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	202, 498, 766
BstDEI	CTNAG	2 cut(s)	463, 945
BstDSI	CCRYGG	1 cut(s)	527
BstF5I	GGATG	3 cut(s)	150, 321, 933
BstFNI	CGCG	1 cut(s)	857
BstH2I	RGCGCY	1 cut(s)	812
BstHHI	GCGC	2 cut(s)	507, 811
BstKTI	GATC	5 cut(s)	217, 634, 685, 876, 999
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	5 cut(s)	214, 631, 682, 873, 996
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 502, 511, 770
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	2 cut(s)	120, 768
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	835
BstUI	CGCG	1 cut(s)	857
BstV1I	GCAGC	4 cut(s)	642, 760, 818, 867
BsuRI	GGCC	2 cut(s)	384, 603
BtgI	CCRYGG	1 cut(s)	527
BtsCI	GGATG	3 cut(s)	150, 321, 933
BtsIMutI	CAGTG	3 cut(s)	309, 351, 645
Cac8I	GCNNGC	3 cut(s)	202, 498, 766
CfoI	GCGC	2 cut(s)	507, 811
Cfr13I	GGNCC	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	463, 945
DpnI	GATC	5 cut(s)	216, 633, 684, 875, 998
DpnII	GATC	5 cut(s)	214, 631, 682, 873, 996
DraI	TTTAAA	2 cut(s)	732, 894
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	514
Eco130I	CCWWGG	3 cut(s)	206, 527, 793
Eco24I	GRGCYC	1 cut(s)	516
Eco53kI	GAGCTC	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	3 cut(s)	206, 527, 793
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	3 cut(s)	206, 527, 793
Esp3I	CGTCTC	1 cut(s)	8
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	813
FauI	CCCGC	1 cut(s)	253
FauNDI	CATATG	1 cut(s)	993
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	656, 774, 807, 881
FokI	GGATG	3 cut(s)	137, 328, 940
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	4 cut(s)	656, 774, 807, 881
FspBI	CTAG	1 cut(s)	569
GlaI	GCGC	2 cut(s)	506, 810
GluI	GCNGC	4 cut(s)	656, 774, 807, 881
GsuI	CTGGAG	3 cut(s)	77, 695, 867
HaeII	RGCGCY	1 cut(s)	812
HaeIII	GGCC	2 cut(s)	384, 603
HhaI	GCGC	2 cut(s)	507, 811
Hin6I	GCGC	2 cut(s)	505, 809
HinP1I	GCGC	2 cut(s)	505, 809
HindIII	AAGCTT	2 cut(s)	198, 366
HinfI	GANTC	3 cut(s)	182, 331, 394
HphI	GGTGA	4 cut(s)	23, 397, 516, 964
Hpy166II	GTNNAC	3 cut(s)	21, 853, 868
Hpy188I	TCNGA	5 cut(s)	136, 181, 219, 466, 946
Hpy188III	TCNNGA	4 cut(s)	276, 391, 439, 589
Hpy8I	GTNNAC	3 cut(s)	21, 853, 868
HpyAV	CCTTC	1 cut(s)	913
HpyCH4III	ACNGT	2 cut(s)	712, 942
HpyCH4IV	ACGT	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 502, 511, 770
HpyF3I	CTNAG	2 cut(s)	463, 945
HpySE526I	ACGT	1 cut(s)	17
HspAI	GCGC	2 cut(s)	505, 809
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	214, 631, 682, 873, 996
LmnI	GCTCC	3 cut(s)	232, 502, 545
LpnPI	CCDG	8 cut(s)	41, 68, 256, 297, 549, 651, 659, 831
Lsp1109I	GCAGC	4 cut(s)	642, 760, 818, 867
LweI	GCATC	4 cut(s)	295, 306, 335, 892
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	119, 740, 752
MalI	GATC	5 cut(s)	216, 633, 684, 875, 998
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	5 cut(s)	214, 631, 682, 873, 996
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	3 cut(s)	417, 478, 592
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	8 cut(s)	37, 223, 276, 373, 446, 713, 835, 918
MroXI	GAANNNNTTC	2 cut(s)	479, 864
MseI	TTAA	5 cut(s)	90, 731, 801, 893, 1006
MslI	CAYNNNNRTG	4 cut(s)	190, 300, 314, 407
MspCI	CTTAAG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	2 cut(s)	197, 418
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	857
MwoI	GCNNNNNNNGC	4 cut(s)	201, 502, 511, 770
NcoI	CCATGG	1 cut(s)	527
NdeI	CATATG	1 cut(s)	993
NdeII	GATC	5 cut(s)	214, 631, 682, 873, 996
NlaIV	GGNNCC	2 cut(s)	53, 547
NmeAIII	GCCGAG	1 cut(s)	749
NmuCI	GTSAC	1 cut(s)	740
NspI	RCATGY	2 cut(s)	120, 768
PaeI	GCATGC	1 cut(s)	768
PciI	ACATGT	1 cut(s)	116
PctI	GAATGC	2 cut(s)	197, 418
PdmI	GAANNNNTTC	2 cut(s)	479, 864
PfeI	GAWTC	3 cut(s)	182, 331, 394
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	657, 775, 808, 882
PscI	ACATGT	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	53, 547
PspPI	GGNCC	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	839
RseI	CAYNNNNRTG	4 cut(s)	190, 300, 314, 407
SacI	GAGCTC	1 cut(s)	516
SaqAI	TTAA	5 cut(s)	90, 731, 801, 893, 1006
SatI	GCNGC	4 cut(s)	656, 774, 807, 881
Sau3AI	GATC	5 cut(s)	214, 631, 682, 873, 996
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	4 cut(s)	295, 306, 335, 892
SfcI	CTRYAG	1 cut(s)	835
SmiMI	CAYNNNNRTG	4 cut(s)	190, 300, 314, 407
SmlI	CTYRAG	2 cut(s)	89, 437
SmoI	CTYRAG	2 cut(s)	89, 437
SphI	GCATGC	1 cut(s)	768
Sse9I	AATT	3 cut(s)	417, 478, 592
SsiI	CCGC	4 cut(s)	260, 500, 738, 857
SspI	AATATT	1 cut(s)	914
SspMI	CTAG	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	3 cut(s)	206, 527, 793
TaaI	ACNGT	2 cut(s)	712, 942
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	4 cut(s)	228, 705, 876, 962
TasI	AATT	3 cut(s)	417, 478, 592
TfiI	GAWTC	3 cut(s)	182, 331, 394
Tru1I	TTAA	5 cut(s)	90, 731, 801, 893, 1006
Tru9I	TTAA	5 cut(s)	90, 731, 801, 893, 1006
TscAI	CASTG	3 cut(s)	316, 358, 645
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	4 cut(s)	655, 773, 806, 880
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	9 cut(s)	17, 159, 174, 254, 290, 425, 947, 951, 993
TspGWI	ACGGA	2 cut(s)	38, 416
TspRI	CASTG	3 cut(s)	316, 358, 645
Vha464I	CTTAAG	1 cut(s)	89
XapI	RAATTY	2 cut(s)	478, 592
XceI	RCATGY	2 cut(s)	120, 768
XmnI	GAANNNNTTC	2 cut(s)	479, 864
XspI	CTAG	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.