Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Reverse (-)

43276625 .. 43322134

Gene Structure 45510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG304100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCGAGTATAAGCGCCTCAAGAAGGTCCTCAAGACTTGTCAGACTTGCAAGACACCATGATGATGAGGCTGAACAAGAAGAGGCGTCTGTTGATCCTAATCAAAATCAGCTGTCCTGTCAATGTCAATCTTGCCCTGTGTGTGATAAGACATTCTTCTCAGAGTTGATGAAGGAAGCTTCAGACATAGCTATATGTTTGTGTTATCCCAGAAAGGTGAAAACAGAAGAACAAATGGGATATAAATTAATAGATACCGGGATCGGCCCATTAAAACTCAAACGTTATTATACATGCAATTTTTATTTAATTAAAAAAAATCCATTCATCTTCTATGGATATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

115

Amino Acids

13.29

Weight (kDa)

8.15

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	283
AclWI	GGATC	2 cut(s)	89, 269
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	24
AluBI	AGCT	3 cut(s)	112, 179, 191
AluI	AGCT	3 cut(s)	112, 179, 191
AlwI	GGATC	2 cut(s)	89, 269
AoxI	GGCC	1 cut(s)	265
AseI	ATTAAT	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	27, 266
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	259
BfoI	RGCGCY	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	27, 266
BmrFI	CCNGG	1 cut(s)	259
BpuEI	CTTGAG	2 cut(s)	4, 16
BpuMI	CCSGG	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	24
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	94, 261
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	173
BspPI	GGATC	2 cut(s)	89, 269
BssMI	GATC	2 cut(s)	94, 261
BssNI	GRCGYC	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	160
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	97, 264
BstMBI	GATC	2 cut(s)	94, 261
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	27, 266
CseI	GACGC	1 cut(s)	75
CviAII	CATG	2 cut(s)	59, 294
CviJI	RGCY	5 cut(s)	71, 112, 179, 191, 267
CviKI_1	RGCY	5 cut(s)	71, 112, 179, 191, 267
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	2 cut(s)	96, 263
DpnII	GATC	2 cut(s)	94, 261
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	165
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	27
FaeI	CATG	2 cut(s)	62, 297
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	2 cut(s)	58, 293
GlaI	GCGC	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	62, 297
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	177
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	44, 163, 184
Hpy188III	TCNNGA	2 cut(s)	21, 33
HpyAV	CCTTC	2 cut(s)	18, 166
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	2 cut(s)	50, 297
HpyF3I	CTNAG	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	283
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	62, 297
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	94, 261
LpnPI	CCDG	4 cut(s)	130, 150, 223, 271
MaeII	ACGT	1 cut(s)	283
MalI	GATC	2 cut(s)	96, 263
MboI	GATC	2 cut(s)	94, 261
MboII	GAAGA	4 cut(s)	92, 148, 239, 322
MluCI	AATT	3 cut(s)	245, 298, 309
MnlI	CCTC	4 cut(s)	28, 40, 61, 76
MseI	TTAA	4 cut(s)	248, 272, 308, 312
MslI	CAYNNNNRTG	2 cut(s)	60, 63
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	259
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	94, 261
NlaIII	CATG	2 cut(s)	62, 297
NspI	RCATGY	1 cut(s)	297
PacI	TTAATTAA	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	27, 266
PspPPI	RGGWCCY	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	112
RseI	CAYNNNNRTG	2 cut(s)	60, 63
SaqAI	TTAA	4 cut(s)	248, 272, 308, 312
Sau3AI	GATC	2 cut(s)	94, 261
Sau96I	GGNCC	2 cut(s)	27, 266
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	6 cut(s)	29, 114, 181, 193, 219, 286
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	60, 63
SmlI	CTYRAG	2 cut(s)	19, 31
SmoI	CTYRAG	2 cut(s)	19, 31
Sse9I	AATT	3 cut(s)	245, 298, 309
StyD4I	CCNGG	1 cut(s)	257
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	245, 298, 309
Tru1I	TTAA	4 cut(s)	248, 272, 308, 312
Tru9I	TTAA	4 cut(s)	248, 272, 308, 312
TspDTI	ATGAA	2 cut(s)	185, 316
VpaK11BI	GGWCC	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	22
XceI	RCATGY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.