Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Reverse (-)

14702539 .. 14705828

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21121.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAAATTCGGAGAGGCGTTCATGGAATACCTGCATAACGAAAGAGAGAGGTACAGCGTCCTGGAGAAATGCTCGCATGTCGAGTATAAGCGTTTCAAGAAGGTCCTCAAGACTTGTCAGACTTGCAAGGATGAAGATGAGGCTGCTGCTGTTGCTTCTTCTCGTCAGAACAATCAAAATCAGATTTCCTGTCAATGTCAATCTTGCCCTGTGTGTGATCAGACATTCTTCACAGAGTTGATGAAGGAAGCTTCAGACATATCTGTATGCTTTAATTTGAGAGCAAGACATCTACTCCATCTCCATGTTGCTAGTGGAATACAAAGATACTTGCTGCGGTTTCGGCAATGTTTCAAGTATGATCAACAAGCCATGGTTGAAGAAGGGCGGATGTTGATTGAGTATGCTACAATGAACGCAGTTGCTATCAGAAAAATCCTTAAGAAATATGATAAGGTACATTGCTCCGAGAATGGCAAGCATTTCAAATCTAAGTTGCGGGATGAACATGTTGAGCTTTTGCAATCACCTTGGCTTATAGAATTAGGTGCTTTTTATTTGAATCTTGAGGGATCGGATGGCGGAGAGTTTAATGAGCTTTCTAGTCACTTCTCTTGTGATCTTGATGCAACACCACCTATAATGGCTTTGATTCTTCCTGACTCTCTAAAAATCGAATATGATCTGACTTGTGCTATATGCTTGGAGACTGTATTCAATCCATATGCTTTGAGTTGTGGTCACCTTTTCTGCAAGTCTTGTGCTTGCTCAGCCGCTTCTGTGTACATTTTCCAAGGCCCAAAAACTGCAGACTCATGTTCAAAATGCCCAATATGCAGAGAGACTGGAGTATATGCTAAAGCAGTGCACATGTTAGAACTAGATCTGCTCCTGAAAACAAGGTGCAAAGACTGTTGGAAAGAGAGGTATAATGCAGAACGTACAGAAACGGTGAAGCAAACTAAGGTGTTTTGGGATTTACAAGCCAAATACGCACTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

335

Amino Acids

38.46

Weight (kDa)

7.09

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RING_XB3-XBAT31	PF24921	230 - 282	1.1e-06	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-RING_UBOX	PF13445	231 - 255	7.2e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AciI	CCGC	5 cut(s)	337, 388, 499, 582, 774
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	5 cut(s)	53, 459, 785, 943, 1001
AflII	CTTAAG	1 cut(s)	440
AflIII	ACRYGT	2 cut(s)	508, 870
AgsI	TTSAA	7 cut(s)	97, 355, 380, 487, 562, 718, 822
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	3 cut(s)	251, 517, 598
AluI	AGCT	3 cut(s)	251, 517, 598
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	701, 836
Alw44I	GTGCAC	1 cut(s)	866
AlwI	GGATC	1 cut(s)	580
AoxI	GGCC	1 cut(s)	796
ApaLI	GTGCAC	1 cut(s)	866
ApeKI	GCWGC	3 cut(s)	143, 146, 334
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	103, 797
AsuHPI	GGTGA	3 cut(s)	519, 734, 964
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	870
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	3 cut(s)	130, 133, 321
BccI	CCATC	2 cut(s)	306, 572
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	2 cut(s)	217, 361
BcoDI	GTCTC	2 cut(s)	701, 836
BfaI	CTAG	3 cut(s)	312, 603, 881
BfmI	CTRYAG	1 cut(s)	807
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	39
BglII	AGATCT	1 cut(s)	883
BisI	GCNGC	4 cut(s)	144, 147, 335, 774
BlpI	GCTNAGC	1 cut(s)	769
BlsI	GCNGC	4 cut(s)	145, 148, 336, 775
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 797
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	616
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	2 cut(s)	83, 867
Bpu1102I	GCTNAGC	1 cut(s)	769
BpuEI	CTTGAG	2 cut(s)	92, 587
BsaJI	CCNNGG	3 cut(s)	372, 530, 793
BsaXI	ACNNNNNCTCC	4 cut(s)	279, 285, 309, 315
Bse1I	ACTGG	1 cut(s)	850
Bse3DI	GCAATG	2 cut(s)	353, 460
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	372, 530, 793
BseGI	GGATG	4 cut(s)	136, 396, 508, 583
BseMI	GCAATG	2 cut(s)	353, 460
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	1 cut(s)	850
BseSI	GKGCMC	1 cut(s)	870
BseXI	GCAGC	3 cut(s)	130, 133, 321
BshFI	GGCC	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	870
BsmAI	GTCTC	2 cut(s)	701, 836
BsnI	GGCC	1 cut(s)	798
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	6 cut(s)	217, 361, 572, 619, 682, 883
Bsp1720I	GCTNAGC	1 cut(s)	769
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	5 cut(s)	337, 388, 499, 582, 774
BspANI	GGCC	1 cut(s)	798
BspCNI	CTCAG	1 cut(s)	782
BspMAI	CTGCAG	1 cut(s)	811
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	580
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	353, 460
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	850
BssECI	CCNNGG	3 cut(s)	372, 530, 793
BssMI	GATC	6 cut(s)	217, 361, 572, 619, 682, 883
BssT1I	CCWWGG	3 cut(s)	372, 530, 793
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	4 cut(s)	712, 914, 952, 999
BstAFI	CTTAAG	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	783
BstC8I	GCNNGC	3 cut(s)	74, 479, 766
BstDEI	CTNAG	3 cut(s)	492, 769, 963
BstDSI	CCRYGG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	740
BstF5I	GGATG	4 cut(s)	136, 396, 508, 583
BstKTI	GATC	6 cut(s)	220, 364, 575, 622, 685, 886
BstMAI	GTCTC	2 cut(s)	701, 836
BstMBI	GATC	6 cut(s)	217, 361, 572, 619, 682, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 343, 770, 834, 992
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	3 cut(s)	80, 512, 874
BstPI	GGTNACC	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	1 cut(s)	870
BstV1I	GCAGC	3 cut(s)	130, 133, 321
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BsuRI	GGCC	1 cut(s)	798
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	136, 396, 508, 583
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	2 cut(s)	870, 995
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	74, 479, 766
Cfr13I	GGNCC	2 cut(s)	103, 797
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	5 cut(s)	52, 458, 784, 942, 1000
CviAII	CATG	7 cut(s)	22, 77, 305, 373, 509, 816, 871
CviQI	GTAC	5 cut(s)	52, 458, 784, 942, 1000
DdeI	CTNAG	3 cut(s)	492, 769, 963
DpnI	GATC	6 cut(s)	219, 363, 574, 621, 684, 885
DpnII	GATC	6 cut(s)	217, 361, 572, 619, 682, 883
EciI	GGCGGA	2 cut(s)	403, 597
Eco130I	CCWWGG	3 cut(s)	372, 530, 793
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	3 cut(s)	372, 530, 793
ErhI	CCWWGG	3 cut(s)	372, 530, 793
FaeI	CATG	7 cut(s)	25, 80, 308, 376, 512, 819, 874
FatI	CATG	7 cut(s)	21, 76, 304, 372, 508, 815, 870
FauI	CCCGC	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	724
FbaI	TGATCA	2 cut(s)	217, 361
Fnu4HI	GCNGC	4 cut(s)	144, 147, 335, 774
FokI	GGATG	4 cut(s)	143, 403, 515, 590
Fsp4HI	GCNGC	4 cut(s)	144, 147, 335, 774
FspBI	CTAG	3 cut(s)	312, 603, 881
GluI	GCNGC	4 cut(s)	144, 147, 335, 774
GsuI	CTGGAG	2 cut(s)	83, 867
HaeIII	GGCC	1 cut(s)	798
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	7 cut(s)	25, 80, 308, 376, 512, 819, 874
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	4 cut(s)	562, 652, 662, 812
HphI	GGTGA	3 cut(s)	519, 734, 964
Hpy166II	GTNNAC	2 cut(s)	784, 868
Hpy188III	TCNNGA	6 cut(s)	97, 109, 566, 623, 659, 892
Hpy8I	GTNNAC	2 cut(s)	784, 868
HpyAV	CCTTC	3 cut(s)	94, 238, 377
HpyCH4III	ACNGT	4 cut(s)	712, 914, 952, 999
HpyCH4IV	ACGT	1 cut(s)	940
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 343, 770, 834, 992
HpyF3I	CTNAG	3 cut(s)	492, 769, 963
HpySE526I	ACGT	1 cut(s)	940
Hsp92II	CATG	7 cut(s)	25, 80, 308, 376, 512, 819, 874
Ksp22I	TGATCA	2 cut(s)	217, 361
Kzo9I	GATC	6 cut(s)	217, 361, 572, 619, 682, 883
LmnI	GCTCC	2 cut(s)	470, 894
LpnPI	CCDG	8 cut(s)	44, 47, 74, 202, 222, 672, 831, 905
Lsp1109I	GCAGC	3 cut(s)	130, 133, 321
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	3 cut(s)	312, 603, 881
MaeII	ACGT	1 cut(s)	940
MaeIII	GTNAC	2 cut(s)	605, 740
MalI	GATC	6 cut(s)	219, 363, 574, 621, 684, 885
MboI	GATC	6 cut(s)	217, 361, 572, 619, 682, 883
MboII	GAAGA	5 cut(s)	146, 150, 220, 392, 647
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	3 cut(s)	5, 274, 542
MlyI	GAGTC	2 cut(s)	656, 806
MmeI	TCCRAC	1 cut(s)	896
MnlI	CCTC	6 cut(s)	7, 42, 116, 133, 562, 918
MseI	TTAA	3 cut(s)	273, 441, 591
MslI	CAYNNNNRTG	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	152, 343, 770, 834, 992
NcoI	CCATGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	6 cut(s)	217, 361, 572, 619, 682, 883
NlaIII	CATG	7 cut(s)	25, 80, 308, 376, 512, 819, 874
NmuCI	GTSAC	2 cut(s)	605, 740
NspI	RCATGY	3 cut(s)	80, 512, 874
PciI	ACATGT	2 cut(s)	508, 870
PfeI	GAWTC	2 cut(s)	562, 652
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	4 cut(s)	145, 148, 336, 775
PleI	GAGTC	2 cut(s)	656, 806
PpsI	GAGTC	2 cut(s)	656, 806
PpuMI	RGGWCCY	1 cut(s)	103
PscI	ACATGT	2 cut(s)	508, 870
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	60
PspEI	GGTNACC	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	103, 797
PspPPI	RGGWCCY	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	5 cut(s)	53, 459, 785, 943, 1001
RsaNI	GTAC	5 cut(s)	52, 458, 784, 942, 1000
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	273, 441, 591
SatI	GCNGC	4 cut(s)	144, 147, 335, 774
Sau3AI	GATC	6 cut(s)	217, 361, 572, 619, 682, 883
Sau96I	GGNCC	2 cut(s)	103, 797
SchI	GAGTC	2 cut(s)	656, 806
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	870
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	807
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	3 cut(s)	107, 440, 566
SmoI	CTYRAG	3 cut(s)	107, 440, 566
Sse9I	AATT	3 cut(s)	5, 274, 542
SsiI	CCGC	5 cut(s)	337, 388, 499, 582, 774
SspMI	CTAG	3 cut(s)	312, 603, 881
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	3 cut(s)	372, 530, 793
TaaI	ACNGT	4 cut(s)	712, 914, 952, 999
TaiI	ACGT	1 cut(s)	943
TaqI	TCGA	2 cut(s)	81, 675
TasI	AATT	3 cut(s)	5, 274, 542
TatI	WGTACW	2 cut(s)	783, 999
TauI	GCSGC	1 cut(s)	776
TfiI	GAWTC	2 cut(s)	562, 652
Tru1I	TTAA	3 cut(s)	273, 441, 591
Tru9I	TTAA	3 cut(s)	273, 441, 591
TscAI	CASTG	2 cut(s)	870, 1002
TseFI	GTSAC	2 cut(s)	605, 740
TseI	GCWGC	3 cut(s)	143, 146, 334
Tsp45I	GTSAC	2 cut(s)	605, 740
TspDTI	ATGAA	6 cut(s)	10, 17, 147, 257, 428, 519
TspRI	CASTG	2 cut(s)	870, 1002
Vha464I	CTTAAG	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	866
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	3 cut(s)	80, 512, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XspI	CTAG	3 cut(s)	312, 603, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.