Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Forward (+)

12218143 .. 12221532

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G088600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAATTCGGAGATACTTTTACGGAGTTTCTGCATAAGGAACAAGTACGATTCTCGGAGAAGTGCTCGCATGTCGAGTATAAGCGGCTGAAGAAAGTCCTCAAGACTTGTCAGAGTTGTAAGACATTGCAAGAAGCTTCAACTGCTGATCAACAAGAAGGTGCTGCTAATCAAAATAAACAGTTGTGTCAATGTCAATCTTGCCCTGCATGTGATCAGGCATTCTTCACAGAGTTAATGAAGGAAGTTTCAGACATAGCTCTATGCTTCAGTTTGAGAGTCAGACATCTCCTCCATCTCCATGTTGCTACTGGAATGCAGAGATACTTACTGTGGTTGCGTCAATGTTTTATGAATGATCAGCAAGCCATGGTAGAAAAAGGGCGGACGCTGATAGAATATGTTACAATGAACGCAATTGCTATCAGAAAAATCCTTAAGAAATATGATAAAGTACATAGCTCTGAAAATGGCAAGATTTTCAAATCCAAGATGCGGGCTGAACATATCGAGCTTTTGCAATCACCTTGGCTTATAGAATTGGGTGCTTTTTCTTTGAATCTTCATGGATCAGATGGTGAAGGCCTCAATGAGCTTTCTGGTCACTTCTCTTGTGATCTTGATATGACACCACCTATAATGACATTGATGCTTCCTGACTCCTTGAAGATGGAATATGATCTGACTTGTGCTGTATGCTTGGAAACTGTTTTCAATCCATATGCTTTGAGCTGCGGCCACCTTTTCTGCAAGTCTTGTGCTTGCTCAGCTGCTTCTGTGTTTATCTTCCAAGGCCCTAAATCTGCAGCCCTGGATGCAAAGTGCCCAATATGCAGAGAGGCCGGAGTGTATGCTAAAGCAGTGCACATGTTGGAACTAGATCTGCTCCTGAAAATAAGGTGCAAAGACTACTGGAAAGAGAGGTATACTGCAGAACGTGCAGAGATACTGAAGCAAAGTAAGGAGTTTTGGGATTTACAAGCCAAATATGCGGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

334

Amino Acids

38.07

Weight (kDa)

8.02

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	926
AciI	CCGC	5 cut(s)	85, 385, 496, 735, 992
AclWI	GGATC	1 cut(s)	577
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	3 cut(s)	110, 253, 971
AfaI	GTAC	2 cut(s)	48, 456
AfiI	CCNNNNNNNGG	1 cut(s)	495
AflII	CTTAAG	1 cut(s)	437
AflIII	ACRYGT	1 cut(s)	867
AgsI	TTSAA	5 cut(s)	141, 484, 559, 667, 715
AjnI	CCWGG	1 cut(s)	810
AluBI	AGCT	7 cut(s)	137, 260, 462, 514, 595, 732, 770
AluI	AGCT	7 cut(s)	137, 260, 462, 514, 595, 732, 770
Alw21I	GWGCWC	2 cut(s)	68, 867
Alw44I	GTGCAC	1 cut(s)	863
AlwI	GGATC	1 cut(s)	577
AoxI	GGCC	4 cut(s)	583, 736, 793, 840
ApaLI	GTGCAC	1 cut(s)	863
ApeKI	GCWGC	4 cut(s)	164, 732, 770, 806
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	794
AsuHPI	GGTGA	2 cut(s)	516, 590
BaeGI	GKGCMC	2 cut(s)	827, 867
Bbv12I	GWGCWC	2 cut(s)	68, 867
BbvI	GCAGC	4 cut(s)	151, 719, 757, 818
BccI	CCATC	3 cut(s)	303, 569, 664
BciT130I	CCWGG	1 cut(s)	812
BclI	TGATCA	3 cut(s)	148, 214, 358
BfaI	CTAG	1 cut(s)	878
BfmI	CTRYAG	2 cut(s)	804, 930
BfrI	CTTAAG	1 cut(s)	437
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	6 cut(s)	86, 165, 733, 736, 771, 807
BlpI	GCTNAGC	1 cut(s)	766
BlsI	GCNGC	6 cut(s)	87, 166, 734, 737, 772, 808
Bme1390I	CCNGG	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	794
BmrFI	CCNGG	1 cut(s)	812
BmsI	GCATC	3 cut(s)	483, 639, 805
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu1102I	GCTNAGC	1 cut(s)	766
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	4 cut(s)	369, 527, 790, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	2 cut(s)	316, 917
Bse3DI	GCAATG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	4 cut(s)	369, 527, 790, 810
BseGI	GGATG	1 cut(s)	820
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	2 cut(s)	316, 917
BseRI	GAGGAG	1 cut(s)	281
BseSI	GKGCMC	2 cut(s)	827, 867
BseXI	GCAGC	4 cut(s)	151, 719, 757, 818
BsgI	GTGCAG	1 cut(s)	960
BshFI	GGCC	4 cut(s)	585, 738, 795, 842
BsiHKAI	GWGCWC	2 cut(s)	68, 867
BsiSI	CCGG	1 cut(s)	843
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmI	GAATGC	2 cut(s)	221, 321
BsnI	GGCC	4 cut(s)	585, 738, 795, 842
Bsp1286I	GDGCHC	3 cut(s)	68, 827, 867
Bsp143I	GATC	7 cut(s)	148, 214, 358, 569, 616, 679, 880
Bsp1720I	GCTNAGC	1 cut(s)	766
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	5 cut(s)	85, 385, 496, 735, 992
BspANI	GGCC	4 cut(s)	585, 738, 795, 842
BspCNI	CTCAG	1 cut(s)	779
BspMAI	CTGCAG	2 cut(s)	808, 934
BspPI	GGATC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	316, 917
BssECI	CCNNGG	4 cut(s)	369, 527, 790, 810
BssMI	GATC	7 cut(s)	148, 214, 358, 569, 616, 679, 880
BssNAI	GTATAC	1 cut(s)	927
BssT1I	CCWWGG	3 cut(s)	369, 527, 790
Bst1107I	GTATAC	1 cut(s)	927
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	3 cut(s)	183, 333, 709
BstAFI	CTTAAG	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	938
BstC8I	GCNNGC	4 cut(s)	68, 366, 498, 763
BstDEI	CTNAG	1 cut(s)	766
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	820
BstKTI	GATC	7 cut(s)	151, 217, 361, 572, 619, 682, 883
BstMBI	GATC	7 cut(s)	148, 214, 358, 569, 616, 679, 880
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 767, 815, 831, 938, 989
BstNI	CCWGG	1 cut(s)	812
BstNSI	RCATGY	3 cut(s)	74, 213, 871
BstSCI	CCNGG	1 cut(s)	810
BstSFI	CTRYAG	2 cut(s)	804, 930
BstSLI	GKGCMC	2 cut(s)	827, 867
BstV1I	GCAGC	4 cut(s)	151, 719, 757, 818
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BstZ17I	GTATAC	1 cut(s)	927
BsuRI	GGCC	4 cut(s)	585, 738, 795, 842
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	4 cut(s)	68, 366, 498, 763
Cfr13I	GGNCC	1 cut(s)	794
CseI	GACGC	2 cut(s)	329, 397
Csp6I	GTAC	2 cut(s)	47, 455
CviAII	CATG	6 cut(s)	71, 210, 302, 370, 566, 868
CviQI	GTAC	2 cut(s)	47, 455
DdeI	CTNAG	1 cut(s)	766
DpnI	GATC	7 cut(s)	150, 216, 360, 571, 618, 681, 882
DpnII	GATC	7 cut(s)	148, 214, 358, 569, 616, 679, 880
EaeI	YGGCCR	1 cut(s)	736
EciI	GGCGGA	1 cut(s)	400
Eco130I	CCWWGG	3 cut(s)	369, 527, 790
Eco147I	AGGCCT	1 cut(s)	585
Eco57I	CTGAAG	3 cut(s)	110, 253, 971
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	810
EcoT14I	CCWWGG	3 cut(s)	369, 527, 790
ErhI	CCWWGG	3 cut(s)	369, 527, 790
FaeI	CATG	6 cut(s)	74, 213, 305, 373, 569, 871
FatI	CATG	6 cut(s)	70, 209, 301, 369, 565, 867
FauI	CCCGC	1 cut(s)	489
FauNDI	CATATG	1 cut(s)	721
FbaI	TGATCA	3 cut(s)	148, 214, 358
FblI	GTMKAC	1 cut(s)	926
Fnu4HI	GCNGC	6 cut(s)	86, 165, 733, 736, 771, 807
FokI	GGATG	1 cut(s)	827
Fsp4HI	GCNGC	6 cut(s)	86, 165, 733, 736, 771, 807
FspBI	CTAG	1 cut(s)	878
GluI	GCNGC	6 cut(s)	86, 165, 733, 736, 771, 807
HaeIII	GGCC	4 cut(s)	585, 738, 795, 842
HapII	CCGG	1 cut(s)	843
HgaI	GACGC	2 cut(s)	329, 397
Hin1II	CATG	6 cut(s)	74, 213, 305, 373, 569, 871
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	4 cut(s)	51, 279, 559, 659
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	2 cut(s)	516, 590
Hpy166II	GTNNAC	2 cut(s)	865, 927
Hpy188I	TCNGA	9 cut(s)	11, 58, 114, 253, 284, 428, 466, 574, 684
Hpy188III	TCNNGA	4 cut(s)	103, 620, 656, 889
Hpy8I	GTNNAC	2 cut(s)	865, 927
HpyAV	CCTTC	3 cut(s)	152, 235, 575
HpyCH4III	ACNGT	3 cut(s)	183, 333, 709
HpyCH4IV	ACGT	1 cut(s)	937
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 767, 815, 831, 938, 989
HpyF3I	CTNAG	1 cut(s)	766
HpySE526I	ACGT	1 cut(s)	937
Hsp92II	CATG	6 cut(s)	74, 213, 305, 373, 569, 871
Ksp22I	TGATCA	3 cut(s)	148, 214, 358
Kzo9I	GATC	7 cut(s)	148, 214, 358, 569, 616, 679, 880
LmnI	GCTCC	1 cut(s)	891
Lsp1109I	GCAGC	4 cut(s)	151, 719, 757, 818
LweI	GCATC	3 cut(s)	483, 639, 805
MaeI	CTAG	1 cut(s)	878
MaeII	ACGT	1 cut(s)	937
MaeIII	GTNAC	2 cut(s)	403, 602
MalI	GATC	7 cut(s)	150, 216, 360, 571, 618, 681, 882
MboI	GATC	7 cut(s)	148, 214, 358, 569, 616, 679, 880
MboII	GAAGA	5 cut(s)	103, 217, 554, 679, 778
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	3 cut(s)	68, 827, 867
MluCI	AATT	3 cut(s)	5, 417, 539
MlyI	GAGTC	2 cut(s)	288, 653
MmeI	TCCRAC	1 cut(s)	852
MnlI	CCTC	5 cut(s)	110, 302, 596, 832, 915
MseI	TTAA	2 cut(s)	236, 438
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	1 cut(s)	843
MspR9I	CCNGG	1 cut(s)	812
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	2 cut(s)	221, 321
MvaI	CCWGG	1 cut(s)	812
MwoI	GCNNNNNNNGC	6 cut(s)	143, 767, 815, 831, 938, 989
NcoI	CCATGG	1 cut(s)	369
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	7 cut(s)	148, 214, 358, 569, 616, 679, 880
NlaIII	CATG	6 cut(s)	74, 213, 305, 373, 569, 871
NmuCI	GTSAC	1 cut(s)	602
NspI	RCATGY	3 cut(s)	74, 213, 871
PceI	AGGCCT	1 cut(s)	585
PciI	ACATGT	1 cut(s)	867
PctI	GAATGC	2 cut(s)	221, 321
PfeI	GAWTC	2 cut(s)	51, 559
PkrI	GCNGC	6 cut(s)	87, 166, 734, 737, 772, 808
PleI	GAGTC	2 cut(s)	287, 653
PpsI	GAGTC	2 cut(s)	287, 653
PscI	ACATGT	1 cut(s)	867
Psp6I	CCWGG	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	810
PspPI	GGNCC	1 cut(s)	794
PstI	CTGCAG	2 cut(s)	808, 934
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	48, 456
RsaNI	GTAC	2 cut(s)	47, 455
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	236, 438
SatI	GCNGC	6 cut(s)	86, 165, 733, 736, 771, 807
Sau3AI	GATC	7 cut(s)	148, 214, 358, 569, 616, 679, 880
Sau96I	GGNCC	1 cut(s)	794
SchI	GAGTC	2 cut(s)	288, 653
ScrFI	CCNGG	1 cut(s)	812
SduI	GDGCHC	3 cut(s)	68, 827, 867
SfaNI	GCATC	3 cut(s)	483, 639, 805
SfcI	CTRYAG	2 cut(s)	804, 930
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	101, 437
SmoI	CTYRAG	2 cut(s)	101, 437
Sse9I	AATT	3 cut(s)	5, 417, 539
SseBI	AGGCCT	1 cut(s)	585
SsiI	CCGC	5 cut(s)	85, 385, 496, 735, 992
SspMI	CTAG	1 cut(s)	878
StuI	AGGCCT	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	810
StyI	CCWWGG	3 cut(s)	369, 527, 790
TaaI	ACNGT	3 cut(s)	183, 333, 709
TaiI	ACGT	1 cut(s)	940
TaqI	TCGA	2 cut(s)	75, 510
TasI	AATT	3 cut(s)	5, 417, 539
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	2 cut(s)	88, 738
TfiI	GAWTC	2 cut(s)	51, 559
Tru1I	TTAA	2 cut(s)	236, 438
Tru9I	TTAA	2 cut(s)	236, 438
TscAI	CASTG	1 cut(s)	867
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	4 cut(s)	164, 732, 770, 806
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	5 cut(s)	17, 254, 368, 425, 554
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	867
Vha464I	CTTAAG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	863
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	3 cut(s)	74, 213, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	926
XspI	CTAG	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.