Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040889.1

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1186

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040889.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 644 bp

tgtgtgatcagacattcttctcagagttgatgaaggaagcttcagacatagctatatgctttaatttgagagccagacatctactccatctccatgttgctactggaatacaaagatacttactgcggtttcgacaatgtttcaagtatgatcaacaagccatggttgaagaagggcggatgctgattgagtatgctacaatgaacgcacttgctatcagaaaaatccttaagaaatatgataaggtacattgctctgaaaatggcaagcatttcaaatccaagttgcagtctgaacatgttgagcttttgcaatcaccttggcttatagaactaggtgccttttatttgaatcttgagggatcggatggtggagagcttaatgagctttctagtcacttttcttgtgatcttgatgcaacaccaccaataatggctttgattcttcccgactctctaaagatggaatacgatctgacttgtgctatatgtttggagactgtgttcaacccatatgctttgagctgtggtcaccttttctgcaagtcttgtgcttgctcagctgcttctgtgtttatcttccaaggcccaaaagctgcagactcagattcaaagtgcccaatatgcagagaggtttgtacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

213

Amino Acids

24.04

Weight (kDa)

5.9

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	2 cut(s)	126, 177
AclWI	GGATC	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	248, 639
AflII	CTTAAG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	6 cut(s)	144, 169, 276, 351, 507, 611
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	8 cut(s)	40, 52, 306, 378, 387, 524, 562, 595
AluI	AGCT	8 cut(s)	40, 52, 306, 378, 387, 524, 562, 595
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	562, 595
AspS9I	GGNCC	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	308, 523
BaeGI	GKGCMC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	549, 582
BccI	CCATC	3 cut(s)	95, 361, 456
BclI	TGATCA	2 cut(s)	6, 150
BcoDI	GTCTC	1 cut(s)	490
BfaI	CTAG	3 cut(s)	334, 392, 642
BfmI	CTRYAG	1 cut(s)	596
BfrI	CTTAAG	1 cut(s)	229
BisI	GCNGC	2 cut(s)	563, 596
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	2 cut(s)	564, 597
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	339
BmsI	GCATC	2 cut(s)	170, 405
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	161, 319, 582
BsaXI	ACNNNNNCTCC	6 cut(s)	68, 74, 98, 104, 487, 517
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	161, 319, 582
BseGI	GGATG	2 cut(s)	185, 372
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	35, 572, 617
BseNI	ACTGG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	2 cut(s)	549, 582
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	5 cut(s)	6, 150, 361, 408, 471
Bsp1720I	GCTNAGC	1 cut(s)	558
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	2 cut(s)	126, 177
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	3 cut(s)	34, 571, 616
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	600
BspPI	GGATC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	3 cut(s)	161, 319, 582
BssMI	GATC	5 cut(s)	6, 150, 361, 408, 471
BssT1I	CCWWGG	3 cut(s)	161, 319, 582
Bst4CI	ACNGT	1 cut(s)	501
BstAFI	CTTAAG	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	268, 555
BstDEI	CTNAG	3 cut(s)	21, 558, 603
BstDSI	CCRYGG	1 cut(s)	161
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	2 cut(s)	185, 372
BstKTI	GATC	5 cut(s)	9, 153, 364, 411, 474
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	5 cut(s)	6, 150, 361, 408, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	384, 559, 623
BstNSI	RCATGY	1 cut(s)	301
BstPI	GGTNACC	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	596
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	2 cut(s)	549, 582
BsuRI	GGCC	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	185, 372
Cac8I	GCNNGC	2 cut(s)	268, 555
Cfr13I	GGNCC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	247, 638
CviAII	CATG	3 cut(s)	94, 162, 298
CviQI	GTAC	2 cut(s)	247, 638
DdeI	CTNAG	3 cut(s)	21, 558, 603
DpnI	GATC	5 cut(s)	8, 152, 363, 410, 473
DpnII	GATC	5 cut(s)	6, 150, 361, 408, 471
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	3 cut(s)	161, 319, 582
Eco57I	CTGAAG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	529
EcoT14I	CCWWGG	3 cut(s)	161, 319, 582
ErhI	CCWWGG	3 cut(s)	161, 319, 582
FaeI	CATG	3 cut(s)	97, 165, 301
FatI	CATG	3 cut(s)	93, 161, 297
FauNDI	CATATG	1 cut(s)	513
FbaI	TGATCA	2 cut(s)	6, 150
Fnu4HI	GCNGC	2 cut(s)	563, 596
FokI	GGATG	2 cut(s)	192, 379
Fsp4HI	GCNGC	2 cut(s)	563, 596
FspBI	CTAG	3 cut(s)	334, 392, 642
GluI	GCNGC	2 cut(s)	563, 596
HaeIII	GGCC	1 cut(s)	587
Hin1II	CATG	3 cut(s)	97, 165, 301
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	5 cut(s)	351, 441, 451, 601, 607
HphI	GGTGA	2 cut(s)	308, 523
Hpy188I	TCNGA	9 cut(s)	11, 24, 45, 220, 258, 294, 366, 476, 606
Hpy188III	TCNNGA	3 cut(s)	355, 412, 448
HpyAV	CCTTC	2 cut(s)	27, 166
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	288, 312, 418, 542, 598, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	384, 559, 623
HpyF3I	CTNAG	3 cut(s)	21, 558, 603
Hsp92II	CATG	3 cut(s)	97, 165, 301
Ksp22I	TGATCA	2 cut(s)	6, 150
Kzo9I	GATC	5 cut(s)	6, 150, 361, 408, 471
LpnPI	CCDG	2 cut(s)	87, 89
Lsp1109I	GCAGC	2 cut(s)	549, 582
LweI	GCATC	2 cut(s)	170, 405
MaeI	CTAG	3 cut(s)	334, 392, 642
MaeIII	GTNAC	2 cut(s)	394, 529
MalI	GATC	5 cut(s)	8, 152, 363, 410, 473
MboI	GATC	5 cut(s)	6, 150, 361, 408, 471
MboII	GAAGA	4 cut(s)	9, 181, 436, 570
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	445, 595
MnlI	CCTC	2 cut(s)	351, 624
MseI	TTAA	3 cut(s)	62, 230, 380
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	562
MspCI	CTTAAG	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	384, 559, 623
NcoI	CCATGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	5 cut(s)	6, 150, 361, 408, 471
NlaIII	CATG	3 cut(s)	97, 165, 301
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	394, 529
NspI	RCATGY	1 cut(s)	301
PciI	ACATGT	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	351, 441, 607
PkrI	GCNGC	2 cut(s)	564, 597
PleI	GAGTC	2 cut(s)	445, 595
PpsI	GAGTC	2 cut(s)	445, 595
PscI	ACATGT	1 cut(s)	297
PspEI	GGTNACC	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	586
PstI	CTGCAG	1 cut(s)	600
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	2 cut(s)	248, 639
RsaNI	GTAC	2 cut(s)	247, 638
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	62, 230, 380
SatI	GCNGC	2 cut(s)	563, 596
Sau3AI	GATC	5 cut(s)	6, 150, 361, 408, 471
Sau96I	GGNCC	1 cut(s)	586
SchI	GAGTC	2 cut(s)	445, 595
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	2 cut(s)	170, 405
SfcI	CTRYAG	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	229, 355
SmoI	CTYRAG	2 cut(s)	229, 355
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	2 cut(s)	126, 177
SspMI	CTAG	3 cut(s)	334, 392, 642
StyI	CCWWGG	3 cut(s)	161, 319, 582
TaaI	ACNGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	3 cut(s)	351, 441, 607
Tru1I	TTAA	3 cut(s)	62, 230, 380
Tru9I	TTAA	3 cut(s)	62, 230, 380
TseFI	GTSAC	2 cut(s)	394, 529
TseI	GCWGC	2 cut(s)	562, 595
Tsp45I	GTSAC	2 cut(s)	394, 529
TspDTI	ATGAA	2 cut(s)	46, 217
Vha464I	CTTAAG	1 cut(s)	229
XceI	RCATGY	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	3 cut(s)	334, 392, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.