Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Forward (+)

27043648 .. 27046964

Gene Structure 3317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAATTCGGAGAGGCTTTCAGGGAATACTTGCGTAACGAACGAGAGCGGTACTTCTTGGAGAAATGCTCGCATGTCGAGTATAAGCGCCTCAAGAAGGTCCTCAAGACTTGTCAGACTTGCAAGGCATTCCATGATGATGAGGCTGAACAAGAAGAGGCGTCTGTTGATCCCGATCAAAATCAGCTGTCCTGTCAATGTCAATCTTGCCCTGTGTGTGATCAGACATTCTTCTCAGAGTTGATGAAGGAAGCTTCAGACATAGCTATATGCTTTAATTTGAGAGCCAGACATCTACTCCATCTCCATGTTGCTACTGGAATACAAAGATACTTACTGCAGTTTCGACAATGTTTCAAGTATGATCAACAAGCCATGGTTGAAGAAGGGCGGATGCTGATTGAGTATGCTACAATGAACGCACTTGCTATCAGAAAAATCCTTAAGAAATATGATAAGGTGCATTGCTCTGAAAATGGCAAGCATTTCAAATCCAAGTTGCATGCTGAACATGTTGAGCTTTTGCAATCACCTTGGCTTATAGAACTAGGTGCCTTTTATTTGAATCTTGAGGGATCAGATGGTGGAGAGCTTAATGAGCTTTCTAGTCACTTTTCTTGTGATCTTGATGCAACACCACCGATAATGGCTTTGATTCTTCCTGACTCTCTAAAGATGGAATACGATCTGACTTGTGCTATATGTTTGGAGACTGTATTCAACCCATATGCTTTGAGCTGTGGTCACCTTTTCTGCAAGTCTTGTGCTTGCTCAGCTGCTTCTGTGTTTATCTTCCAAGGCCCAAAAGCTGCAGACTCAGATTCAAAGTGCCCAATATGCAGAGAGACTGGAGTGTATGCTAAAGCAGTGCATATGTTAGAACTAGACCTGCTCCTGAAAAGAAGGTGCAGAGACTATTGGAAAGAAAGGTATACTGCAGAACGTACAGAAACGTTGAAGCAAACTAAGGAGTTTTGGGATTTACAAGCCAAATATGCACTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

335

Amino Acids

38.8

Weight (kDa)

6.2

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	230 - 282	9.1e-06	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	231 - 283	1.3e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-RING_UBOX	PF13445	232 - 256	1e-06	RING-type zinc-finger
zf-C3HC4	PF00097	232 - 280	7e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	232 - 281	7.3e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	897
AccB1I	GGYRCC	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	932
AciI	CCGC	2 cut(s)	49, 391
AclI	AACGTT	1 cut(s)	953
AclWI	GGATC	2 cut(s)	164, 583
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	3 cut(s)	53, 946, 1004
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	7 cut(s)	358, 383, 490, 565, 721, 825, 958
AluBI	AGCT	9 cut(s)	187, 254, 266, 520, 592, 601, 738, 776, 809
AluI	AGCT	9 cut(s)	187, 254, 266, 520, 592, 601, 738, 776, 809
Alw26I	GTCTC	3 cut(s)	704, 839, 906
AlwI	GGATC	2 cut(s)	164, 583
AoxI	GGCC	1 cut(s)	799
ApeKI	GCWGC	2 cut(s)	776, 809
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	100, 800
AsuHPI	GGTGA	2 cut(s)	522, 737
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	763, 796
BccI	CCATC	3 cut(s)	309, 575, 670
BclI	TGATCA	2 cut(s)	220, 364
BcoDI	GTCTC	3 cut(s)	704, 839, 906
BfaI	CTAG	3 cut(s)	548, 606, 884
BfmI	CTRYAG	3 cut(s)	338, 810, 936
BfoI	RGCGCY	1 cut(s)	91
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	897
BisI	GCNGC	2 cut(s)	777, 810
BlpI	GCTNAGC	1 cut(s)	772
BlsI	GCNGC	2 cut(s)	778, 811
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	100, 800
BmiI	GGNNCC	1 cut(s)	553
BmsI	GCATC	2 cut(s)	384, 619
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	870
Bpu1102I	GCTNAGC	1 cut(s)	772
BpuEI	CTTGAG	3 cut(s)	77, 89, 590
BsaBI	GATNNNNATC	2 cut(s)	174, 180
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	375, 533, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 288, 312, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	322, 853
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	2 cut(s)	174, 180
BseDI	CCNNGG	3 cut(s)	375, 533, 796
BseGI	GGATG	1 cut(s)	399
BseJI	GATNNNNATC	2 cut(s)	174, 180
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	249, 786, 831
BseNI	ACTGG	2 cut(s)	322, 853
BseSI	GKGCMC	1 cut(s)	833
BseXI	GCAGC	2 cut(s)	763, 796
BsgI	GTGCAG	1 cut(s)	928
BshFI	GGCC	1 cut(s)	801
BshNI	GGYRCC	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	3 cut(s)	704, 839, 906
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	801
Bsp1286I	GDGCHC	1 cut(s)	833
Bsp143I	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
Bsp1720I	GCTNAGC	1 cut(s)	772
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	2 cut(s)	49, 391
BspANI	GGCC	1 cut(s)	801
BspCNI	CTCAG	3 cut(s)	248, 785, 830
BspLI	GGNNCC	1 cut(s)	553
BspMAI	CTGCAG	3 cut(s)	342, 814, 940
BspMI	ACCTGC	1 cut(s)	897
BspPI	GGATC	2 cut(s)	164, 583
BspT107I	GGYRCC	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	322, 853
BssECI	CCNNGG	3 cut(s)	375, 533, 796
BssMI	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
BssNAI	GTATAC	1 cut(s)	933
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	3 cut(s)	375, 533, 796
Bst1107I	GTATAC	1 cut(s)	933
Bst4CI	ACNGT	2 cut(s)	715, 1002
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	71, 482, 504, 769
BstDEI	CTNAG	4 cut(s)	235, 772, 817, 966
BstDSI	CCRYGG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	743
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	7 cut(s)	172, 178, 223, 367, 578, 625, 688
BstMAI	GTCTC	3 cut(s)	704, 839, 906
BstMBI	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	598, 773, 837, 995
BstNSI	RCATGY	3 cut(s)	77, 506, 515
BstPI	GGTNACC	1 cut(s)	743
BstSFI	CTRYAG	3 cut(s)	338, 810, 936
BstSLI	GKGCMC	1 cut(s)	833
BstV1I	GCAGC	2 cut(s)	763, 796
BstZ17I	GTATAC	1 cut(s)	933
BsuRI	GGCC	1 cut(s)	801
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	399
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	2 cut(s)	873, 998
BveI	ACCTGC	1 cut(s)	897
Cac8I	GCNNGC	4 cut(s)	71, 482, 504, 769
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	100, 800
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	52, 945, 1003
CviAII	CATG	6 cut(s)	74, 134, 308, 376, 503, 512
CviQI	GTAC	3 cut(s)	52, 945, 1003
DdeI	CTNAG	4 cut(s)	235, 772, 817, 966
DpnI	GATC	7 cut(s)	171, 177, 222, 366, 577, 624, 687
DpnII	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	406
Eco130I	CCWWGG	3 cut(s)	375, 533, 796
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	743
EcoT14I	CCWWGG	3 cut(s)	375, 533, 796
ErhI	CCWWGG	3 cut(s)	375, 533, 796
FaeI	CATG	6 cut(s)	77, 137, 311, 379, 506, 515
FatI	CATG	6 cut(s)	73, 133, 307, 375, 502, 511
FauNDI	CATATG	2 cut(s)	727, 873
FbaI	TGATCA	2 cut(s)	220, 364
FblI	GTMKAC	1 cut(s)	932
Fnu4HI	GCNGC	2 cut(s)	777, 810
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	2 cut(s)	777, 810
FspBI	CTAG	3 cut(s)	548, 606, 884
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	777, 810
GsuI	CTGGAG	1 cut(s)	870
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	801
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	6 cut(s)	77, 137, 311, 379, 506, 515
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	5 cut(s)	565, 655, 665, 815, 821
HphI	GGTGA	2 cut(s)	522, 737
Hpy166II	GTNNAC	1 cut(s)	933
Hpy188III	TCNNGA	7 cut(s)	94, 106, 173, 569, 626, 662, 895
Hpy8I	GTNNAC	1 cut(s)	933
HpyAV	CCTTC	4 cut(s)	91, 241, 380, 897
HpyCH4III	ACNGT	2 cut(s)	715, 1002
HpyCH4IV	ACGT	2 cut(s)	943, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	598, 773, 837, 995
HpyF3I	CTNAG	4 cut(s)	235, 772, 817, 966
HpySE526I	ACGT	2 cut(s)	943, 953
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	6 cut(s)	77, 137, 311, 379, 506, 515
HspAI	GCGC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	220, 364
Kzo9I	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
LmnI	GCTCC	1 cut(s)	897
LpnPI	CCDG	9 cut(s)	7, 205, 225, 301, 303, 675, 834, 902, 908
Lsp1109I	GCAGC	2 cut(s)	763, 796
LweI	GCATC	2 cut(s)	384, 619
MaeI	CTAG	3 cut(s)	548, 606, 884
MaeII	ACGT	2 cut(s)	943, 953
MaeIII	GTNAC	3 cut(s)	35, 608, 743
MalI	GATC	7 cut(s)	171, 177, 222, 366, 577, 624, 687
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
MboII	GAAGA	5 cut(s)	167, 223, 395, 650, 784
MhlI	GDGCHC	1 cut(s)	833
MluCI	AATT	2 cut(s)	5, 277
MlyI	GAGTC	2 cut(s)	659, 809
MnlI	CCTC	6 cut(s)	7, 101, 113, 136, 151, 565
MseI	TTAA	3 cut(s)	276, 444, 594
MslI	CAYNNNNRTG	2 cut(s)	138, 306
MspA1I	CMGCKG	2 cut(s)	187, 776
MspCI	CTTAAG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	598, 773, 837, 995
NcoI	CCATGG	1 cut(s)	375
NdeI	CATATG	2 cut(s)	727, 873
NdeII	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
NlaIII	CATG	6 cut(s)	77, 137, 311, 379, 506, 515
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	608, 743
NspI	RCATGY	3 cut(s)	77, 506, 515
PaeI	GCATGC	1 cut(s)	506
PciI	ACATGT	1 cut(s)	511
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	3 cut(s)	565, 655, 821
PkrI	GCNGC	2 cut(s)	778, 811
PleI	GAGTC	2 cut(s)	659, 809
PpsI	GAGTC	2 cut(s)	659, 809
PpuMI	RGGWCCY	1 cut(s)	100
PscI	ACATGT	1 cut(s)	511
Psp1406I	AACGTT	1 cut(s)	953
Psp5II	RGGWCCY	1 cut(s)	100
PspEI	GGTNACC	1 cut(s)	743
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	2 cut(s)	100, 800
PspPPI	RGGWCCY	1 cut(s)	100
PstI	CTGCAG	3 cut(s)	342, 814, 940
PvuII	CAGCTG	2 cut(s)	187, 776
RsaI	GTAC	3 cut(s)	53, 946, 1004
RsaNI	GTAC	3 cut(s)	52, 945, 1003
RseI	CAYNNNNRTG	2 cut(s)	138, 306
SaqAI	TTAA	3 cut(s)	276, 444, 594
SatI	GCNGC	2 cut(s)	777, 810
Sau3AI	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
Sau96I	GGNCC	2 cut(s)	100, 800
SchI	GAGTC	2 cut(s)	659, 809
SduI	GDGCHC	1 cut(s)	833
SfaNI	GCATC	2 cut(s)	384, 619
SfcI	CTRYAG	3 cut(s)	338, 810, 936
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	138, 306
SmlI	CTYRAG	4 cut(s)	92, 104, 443, 569
SmoI	CTYRAG	4 cut(s)	92, 104, 443, 569
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	2 cut(s)	5, 277
SsiI	CCGC	2 cut(s)	49, 391
SspMI	CTAG	3 cut(s)	548, 606, 884
StyI	CCWWGG	3 cut(s)	375, 533, 796
TaaI	ACNGT	2 cut(s)	715, 1002
TaiI	ACGT	2 cut(s)	946, 956
TaqI	TCGA	2 cut(s)	78, 346
TasI	AATT	2 cut(s)	5, 277
TatI	WGTACW	1 cut(s)	1002
TfiI	GAWTC	3 cut(s)	565, 655, 821
Tru1I	TTAA	3 cut(s)	276, 444, 594
Tru9I	TTAA	3 cut(s)	276, 444, 594
TscAI	CASTG	2 cut(s)	873, 1005
TseFI	GTSAC	2 cut(s)	608, 743
TseI	GCWGC	2 cut(s)	776, 809
Tsp45I	GTSAC	2 cut(s)	608, 743
TspDTI	ATGAA	3 cut(s)	17, 260, 431
TspRI	CASTG	2 cut(s)	873, 1005
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	3 cut(s)	77, 506, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	932
XspI	CTAG	3 cut(s)	548, 606, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.