Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Reverse (-)

4357625 .. 4361254

Gene Structure 3630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1045700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAATTTGGAGAGACTTACACCGAGTTTTTGCACAAGGAAAAGATACGATTCTCGGAGAATTGCTCGCATGTCGAGTACAAGCGGCTGAAGAATGTTCTCAAGACTTGTCAGAATTGCTCGCATGAATCTTCAGCTGCTCAAGGACAAGAAGGTGCTTCTAATCAAAATCAGCAGTTGTGCCAATGCCAATCTTGCCCTTTGTGTGATCAGGCCTTTTTCACAGAGTTAATGAAGGAGGTTTCGGACATAGCTCTATGTTTTAGTTTGAGAGTCAGACATCTCCTCCATCTCCATGTTGCTACTGGAGCGCAGAGATACTTACTGCGGTTGCGTCAGTGTTTCGTGAATGATCAACAAGCCATGGTAGAAAAAGGGCGGATGCTGATTGAGTATGTTACGATGAACGCAATTGCTATTAGAAAAATCCTTGAGAAATATGATAAAATACATAGCTCTGAGAATGGCAAGCTTTTCAAATCCAAGATGCGGGCTCAACATATTGAGATTTTACAATCACCTTGGCTTATAGAATTGGGTGCTTTTTATTTGAATCTTGATGGATTAGATGATGAAGAGCTCAATGAGGTTTCTGGTCGCTTTTCCTGTGATCTCGATGCGGCACCACCTACAATTACATTGATGCTTCCTGACAACTTAAAGATGGAATATGATCTGACTTGTGCTGTATGCTTGGAAACTGTTTTCAATCCATATGCGTTGAGCTGCGGCCACCTGTTCTGCAAGTCTTGTGCTTGCGCAGCTGCTTCTGTGTTTATTTTCCAAGGCCCTAAATCTGCAGGCCTGGATGCAAAGTGCCCACTATGCAGAGAGGCTGGAGTGTTTGCTAAAGCAGTGCACATGTTGGAACTAGATCTGCTCTTGAAGACAAGGTGCAAAGACTATTGGAAAGAGAGGTACAACGCCGAACGCACAGAGATAGTGAAGCAAACTAAGGAGTTCTGGGATATGCAAGCCAAATATGCCGTAGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

333

Amino Acids

38.0

Weight (kDa)

6.78

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RING_XB3-XBAT31	PF24921	227 - 278	2.7e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-RING_UBOX	PF13445	228 - 255	9.7e-07	RING-type zinc-finger
zf-C3HC4	PF00097	228 - 276	2.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	760
AccB1I	GGYRCC	1 cut(s)	622
AciI	CCGC	6 cut(s)	85, 328, 379, 490, 620, 729
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	110, 117
AfaI	GTAC	2 cut(s)	80, 920
AfiI	CCNNNNNNNGG	1 cut(s)	489
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	4 cut(s)	478, 553, 709, 886
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	7 cut(s)	137, 254, 456, 472, 580, 726, 764
AluI	AGCT	7 cut(s)	137, 254, 456, 472, 580, 726, 764
Alw21I	GWGCWC	2 cut(s)	582, 861
Alw26I	GTCTC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	857
AoxI	GGCC	4 cut(s)	213, 730, 787, 802
ApaLI	GTGCAC	1 cut(s)	857
ApeKI	GCWGC	4 cut(s)	137, 726, 761, 764
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	313, 761
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	821, 861
BanI	GGYRCC	1 cut(s)	622
BanII	GRGCYC	2 cut(s)	496, 582
BbsI	GAAGAC	1 cut(s)	893
Bbv12I	GWGCWC	2 cut(s)	582, 861
BbvI	GCAGC	4 cut(s)	124, 713, 751, 773
BccI	CCATC	3 cut(s)	297, 554, 658
BceAI	ACGGC	1 cut(s)	971
BciT130I	CCWGG	1 cut(s)	806
BclI	TGATCA	2 cut(s)	208, 352
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	872
BfmI	CTRYAG	1 cut(s)	798
BglII	AGATCT	1 cut(s)	874
BisI	GCNGC	7 cut(s)	86, 138, 621, 727, 730, 762, 765
BlsI	GCNGC	7 cut(s)	87, 139, 622, 728, 731, 763, 766
Bme1390I	CCNGG	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	1 cut(s)	806
BmsI	GCATC	5 cut(s)	372, 477, 607, 633, 799
BpiI	GAAGAC	1 cut(s)	893
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	2 cut(s)	327, 858
BpuEI	CTTGAG	3 cut(s)	86, 126, 452
BsaJI	CCNNGG	3 cut(s)	363, 521, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	3 cut(s)	363, 521, 784
BseGI	GGATG	2 cut(s)	387, 814
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	2 cut(s)	821, 861
BseXI	GCAGC	4 cut(s)	124, 713, 751, 773
BshFI	GGCC	4 cut(s)	215, 732, 789, 804
BshNI	GGYRCC	1 cut(s)	622
BsiHKAI	GWGCWC	2 cut(s)	582, 861
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	4 cut(s)	215, 732, 789, 804
Bsp1286I	GDGCHC	4 cut(s)	496, 582, 821, 861
Bsp143I	GATC	5 cut(s)	208, 352, 610, 673, 874
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	6 cut(s)	85, 328, 379, 490, 620, 729
BspANI	GGCC	4 cut(s)	215, 732, 789, 804
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	624
BspMAI	CTGCAG	1 cut(s)	802
BspQI	GCTCTTC	1 cut(s)	570
BspT107I	GGYRCC	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	363, 521, 784
BssMI	GATC	5 cut(s)	208, 352, 610, 673, 874
BssT1I	CCWWGG	3 cut(s)	363, 521, 784
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	1 cut(s)	570
BstC8I	GCNNGC	7 cut(s)	68, 122, 470, 492, 757, 802, 975
BstDEI	CTNAG	2 cut(s)	459, 954
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	387, 814
BstHHI	GCGC	2 cut(s)	313, 761
BstKTI	GATC	5 cut(s)	211, 355, 613, 676, 877
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	5 cut(s)	208, 352, 610, 673, 874
BstMWI	GCNNNNNNNGC	5 cut(s)	195, 308, 761, 825, 983
BstNI	CCWGG	1 cut(s)	806
BstNSI	RCATGY	2 cut(s)	74, 865
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	1 cut(s)	798
BstSLI	GKGCMC	2 cut(s)	821, 861
BstV1I	GCAGC	4 cut(s)	124, 713, 751, 773
BstV2I	GAAGAC	1 cut(s)	893
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BsuRI	GGCC	4 cut(s)	215, 732, 789, 804
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	387, 814
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	2 cut(s)	344, 861
Cac8I	GCNNGC	7 cut(s)	68, 122, 470, 492, 757, 802, 975
CfoI	GCGC	2 cut(s)	313, 761
Cfr13I	GGNCC	1 cut(s)	788
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	79, 919
CviAII	CATG	5 cut(s)	71, 125, 296, 364, 862
CviQI	GTAC	2 cut(s)	79, 919
DdeI	CTNAG	2 cut(s)	459, 954
DpnI	GATC	5 cut(s)	210, 354, 612, 675, 876
DpnII	GATC	5 cut(s)	208, 352, 610, 673, 874
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
EciI	GGCGGA	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	580
Eco130I	CCWWGG	3 cut(s)	363, 521, 784
Eco147I	AGGCCT	2 cut(s)	215, 804
Eco24I	GRGCYC	2 cut(s)	496, 582
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	2 cut(s)	110, 117
EcoICRI	GAGCTC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	3 cut(s)	363, 521, 784
EcoT38I	GRGCYC	2 cut(s)	496, 582
ErhI	CCWWGG	3 cut(s)	363, 521, 784
FaeI	CATG	5 cut(s)	74, 128, 299, 367, 865
FatI	CATG	5 cut(s)	70, 124, 295, 363, 861
FauI	CCCGC	1 cut(s)	483
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	2 cut(s)	208, 352
Fnu4HI	GCNGC	7 cut(s)	86, 138, 621, 727, 730, 762, 765
FokI	GGATG	2 cut(s)	394, 821
FriOI	GRGCYC	2 cut(s)	496, 582
Fsp4HI	GCNGC	7 cut(s)	86, 138, 621, 727, 730, 762, 765
FspBI	CTAG	1 cut(s)	872
FspI	TGCGCA	1 cut(s)	760
GlaI	GCGC	2 cut(s)	312, 760
GluI	GCNGC	7 cut(s)	86, 138, 621, 727, 730, 762, 765
GsuI	CTGGAG	2 cut(s)	327, 858
HaeIII	GGCC	4 cut(s)	215, 732, 789, 804
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	313, 761
Hin1II	CATG	5 cut(s)	74, 128, 299, 367, 865
Hin6I	GCGC	2 cut(s)	311, 759
HinP1I	GCGC	2 cut(s)	311, 759
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	4 cut(s)	51, 128, 273, 553
HphI	GGTGA	1 cut(s)	510
Hpy166II	GTNNAC	1 cut(s)	859
Hpy188I	TCNGA	6 cut(s)	58, 114, 247, 278, 460, 678
Hpy188III	TCNNGA	6 cut(s)	103, 346, 557, 614, 650, 883
Hpy8I	GTNNAC	1 cut(s)	859
HpyAV	CCTTC	2 cut(s)	146, 229
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	8 cut(s)	34, 744, 800, 812, 828, 859, 897, 973
HpyF10VI	GCNNNNNNNGC	5 cut(s)	195, 308, 761, 825, 983
HpyF3I	CTNAG	2 cut(s)	459, 954
Hsp92II	CATG	5 cut(s)	74, 128, 299, 367, 865
HspAI	GCGC	2 cut(s)	311, 759
Ksp22I	TGATCA	2 cut(s)	208, 352
Kzo9I	GATC	5 cut(s)	208, 352, 610, 673, 874
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	4 cut(s)	124, 713, 751, 773
LweI	GCATC	5 cut(s)	372, 477, 607, 633, 799
MaeI	CTAG	1 cut(s)	872
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	5 cut(s)	210, 354, 612, 675, 876
MboI	GATC	5 cut(s)	208, 352, 610, 673, 874
MboII	GAAGA	4 cut(s)	103, 123, 587, 898
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	4 cut(s)	496, 582, 821, 861
MluCI	AATT	6 cut(s)	5, 61, 115, 411, 533, 633
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	846
MnlI	CCTC	5 cut(s)	232, 296, 580, 826, 909
MseI	TTAA	2 cut(s)	230, 659
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	2 cut(s)	137, 764
MspR9I	CCNGG	1 cut(s)	806
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	5 cut(s)	195, 308, 761, 825, 983
NcoI	CCATGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	5 cut(s)	208, 352, 610, 673, 874
NlaIII	CATG	5 cut(s)	74, 128, 299, 367, 865
NlaIV	GGNNCC	1 cut(s)	624
NsbI	TGCGCA	1 cut(s)	760
NspI	RCATGY	2 cut(s)	74, 865
PceI	AGGCCT	2 cut(s)	215, 804
PciI	ACATGT	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	51, 128, 553
PkrI	GCNGC	7 cut(s)	87, 139, 622, 728, 731, 763, 766
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PscI	ACATGT	1 cut(s)	861
Psp124BI	GAGCTC	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	1 cut(s)	624
PspPI	GGNCC	1 cut(s)	788
PstI	CTGCAG	1 cut(s)	802
PsuI	RGATCY	1 cut(s)	874
PvuII	CAGCTG	2 cut(s)	137, 764
RsaI	GTAC	2 cut(s)	80, 920
RsaNI	GTAC	2 cut(s)	79, 919
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	230, 659
SatI	GCNGC	7 cut(s)	86, 138, 621, 727, 730, 762, 765
Sau3AI	GATC	5 cut(s)	208, 352, 610, 673, 874
Sau96I	GGNCC	1 cut(s)	788
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	4 cut(s)	496, 582, 821, 861
SfaNI	GCATC	5 cut(s)	372, 477, 607, 633, 799
SfcI	CTRYAG	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	3 cut(s)	101, 141, 431
SmoI	CTYRAG	3 cut(s)	101, 141, 431
Sse9I	AATT	6 cut(s)	5, 61, 115, 411, 533, 633
SseBI	AGGCCT	2 cut(s)	215, 804
SsiI	CCGC	6 cut(s)	85, 328, 379, 490, 620, 729
SspMI	CTAG	1 cut(s)	872
SstI	GAGCTC	1 cut(s)	582
StuI	AGGCCT	2 cut(s)	215, 804
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	3 cut(s)	363, 521, 784
TaaI	ACNGT	1 cut(s)	703
TaqI	TCGA	2 cut(s)	75, 615
TasI	AATT	6 cut(s)	5, 61, 115, 411, 533, 633
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	3 cut(s)	88, 623, 732
TfiI	GAWTC	3 cut(s)	51, 128, 553
Tru1I	TTAA	2 cut(s)	230, 659
Tru9I	TTAA	2 cut(s)	230, 659
TscAI	CASTG	2 cut(s)	344, 861
TseI	GCWGC	4 cut(s)	137, 726, 761, 764
TspDTI	ATGAA	5 cut(s)	17, 141, 248, 419, 588
TspRI	CASTG	2 cut(s)	344, 861
VneI	GTGCAC	1 cut(s)	857
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	2 cut(s)	74, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.