Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Reverse (-)

13440814 .. 13441381

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0161900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCAGAGAAGATGAGATTCTTGGGTTCTTGGATTGAAGTTGCCCCTGCCATTCTAATACGTCCCCATAAGACTTCAACTTCTCCTGACTTGGAGACGATTACTGAAGAGTTGGAGCTCGAGGCAGAAGACCATGACCGGCCAGAAGCCCGCCAATTGAATTTTTGTTTTAATTTACTTCTGTCTGAATACTTTTTGGGTTTTAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

70

Amino Acids

8.19

Weight (kDa)

4.72

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	126
AgsI	TTSAA	3 cut(s)	38, 78, 160
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	135
Bse118I	RCCGGY	1 cut(s)	138
BshFI	GGCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	138
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	118, 142, 149
CviKI_1	RGCY	3 cut(s)	118, 142, 149
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	1 cut(s)	137
FaiI	YATR	2 cut(s)	69, 135
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	60, 99, 152, 156
MaeII	ACGT	1 cut(s)	61
MboII	GAAGA	3 cut(s)	22, 119, 140
MfeI	CAATTG	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	155, 160, 172
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	1 cut(s)	115
MseI	TTAA	2 cut(s)	171, 204
MspI	CCGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	155
NlaIII	CATG	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	171, 204
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	2 cut(s)	64, 120
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	155, 160, 172
SsiI	CCGC	1 cut(s)	151
SstI	GAGCTC	1 cut(s)	120
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	155, 160, 172
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	171, 204
Tru9I	TTAA	2 cut(s)	171, 204
XapI	RAATTY	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.