Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Reverse (-)

21356076 .. 21359586

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG211900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAATTCGGAGAGGCTTTCACGGAATACCTTCATAACGAACGAGAGCGCTACTTCTTGGAGAAATGCTCGCATGTCGAGTACAAGCGCCTCAAGAAGGTCCTCAAGACTTGTCAGACTTGCAAGACATTCCATGATGATGAGGCTGAACAAGAAGAGGCGTCTGTTGATCCTGATCAAAATCAGCTGTCCTGTCAATGTCAATCTTGCCCTGTGTGTGATCAGACATTCTTCTCAGAGTTGATGAAGGAAGCTTCAGACATAGCTATATGCTTTAATTTGAGAGCCAGACATCTACTCCATCTCCATGTTGCTACTGGAATACAAAGATACTTACTGCGGTTTCGACAATGTTTCAAGTATGATCAACAAGCCATGGTTGAAGAAGGGCGGATGCTGATTGAGTATGCTACAATGAACGCACTTGCTATCAGAAAAATCCTTAAGAAATATGATAAGGTACATTGCTCTGAAAATGGCAAGCATTTCAAATCCAAGTTGCAGGCTGAACATGTTGAGCTTTTGCAATCACCTTGGCTTATAGAACTAGGTGCCTTTTATTTGAATCTTGAGGGATCGGATGGTGGAGAGCTTAATGAGCTTTCTAGTCACTTTTCTTGTGATCTTGATGCAACACCACCAATAATGGCTTTGATTCTTCCCGACTCTCTAAAGATGGAATACGATCTGACTTGTGCTATATGTTTGGTAAGGAAAAAAATTTCAGTTCCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

245

Amino Acids

28.39

Weight (kDa)

5.94

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AciI	CCGC	2 cut(s)	340, 391
AclWI	GGATC	2 cut(s)	164, 583
AcsI	RAATTY	2 cut(s)	5, 720
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	2 cut(s)	83, 462
AfeI	AGCGCT	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	4 cut(s)	358, 383, 490, 565
AluBI	AGCT	6 cut(s)	187, 254, 266, 520, 592, 601
AluI	AGCT	6 cut(s)	187, 254, 266, 520, 592, 601
AlwI	GGATC	2 cut(s)	164, 583
Aor51HI	AGCGCT	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	5, 720
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	51, 90
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	551
BccI	CCATC	3 cut(s)	309, 575, 670
BclI	TGATCA	3 cut(s)	175, 220, 364
BfaI	CTAG	2 cut(s)	548, 606
BfoI	RGCGCY	2 cut(s)	52, 91
BfrI	CTTAAG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	553
BmsI	GCATC	2 cut(s)	384, 619
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpuEI	CTTGAG	3 cut(s)	77, 89, 590
BsaBI	GATNNNNATC	2 cut(s)	174, 180
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	375, 533
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 288, 312, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	2 cut(s)	174, 180
BseDI	CCNNGG	2 cut(s)	375, 533
BseGI	GGATG	2 cut(s)	399, 586
BseJI	GATNNNNATC	2 cut(s)	174, 180
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	97
Bsp143I	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	2 cut(s)	340, 391
BspCNI	CTCAG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	553
BspPI	GGATC	2 cut(s)	164, 583
BspT107I	GGYRCC	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	375, 533
BssMI	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	2 cut(s)	375, 533
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	71, 482, 504
BstDEI	CTNAG	1 cut(s)	235
BstDSI	CCRYGG	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	399, 586
BstH2I	RGCGCY	2 cut(s)	52, 91
BstHHI	GCGC	2 cut(s)	51, 90
BstKTI	GATC	7 cut(s)	172, 178, 223, 367, 578, 625, 688
BstMBI	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	598
BstNSI	RCATGY	2 cut(s)	77, 515
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	399, 586
Cac8I	GCNNGC	3 cut(s)	71, 482, 504
CfoI	GCGC	2 cut(s)	51, 90
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	82, 461
CviAII	CATG	5 cut(s)	74, 134, 308, 376, 512
CviQI	GTAC	2 cut(s)	82, 461
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	7 cut(s)	171, 177, 222, 366, 577, 624, 687
DpnII	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	406
Eco130I	CCWWGG	2 cut(s)	375, 533
Eco47I	GGWCC	1 cut(s)	100
Eco47III	AGCGCT	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	375, 533
ErhI	CCWWGG	2 cut(s)	375, 533
FaeI	CATG	5 cut(s)	77, 137, 311, 379, 515
FatI	CATG	5 cut(s)	73, 133, 307, 375, 511
FbaI	TGATCA	3 cut(s)	175, 220, 364
FokI	GGATG	2 cut(s)	406, 593
FspBI	CTAG	2 cut(s)	548, 606
GlaI	GCGC	2 cut(s)	50, 89
HaeII	RGCGCY	2 cut(s)	52, 91
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	2 cut(s)	51, 90
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	77, 137, 311, 379, 515
Hin6I	GCGC	2 cut(s)	49, 88
HinP1I	GCGC	2 cut(s)	49, 88
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	3 cut(s)	565, 655, 665
HphI	GGTGA	1 cut(s)	522
Hpy188I	TCNGA	9 cut(s)	11, 117, 225, 238, 259, 434, 472, 580, 690
Hpy188III	TCNNGA	6 cut(s)	94, 106, 173, 569, 626, 662
HpyAV	CCTTC	4 cut(s)	41, 91, 241, 380
HpyCH4V	TGCA	4 cut(s)	123, 502, 526, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	598
HpyF3I	CTNAG	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	5 cut(s)	77, 137, 311, 379, 515
HspAI	GCGC	2 cut(s)	49, 88
Ksp22I	TGATCA	3 cut(s)	175, 220, 364
Kzo9I	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
LpnPI	CCDG	6 cut(s)	186, 205, 225, 301, 303, 488
LweI	GCATC	2 cut(s)	384, 619
MaeI	CTAG	2 cut(s)	548, 606
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	7 cut(s)	171, 177, 222, 366, 577, 624, 687
MboI	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
MboII	GAAGA	4 cut(s)	167, 223, 395, 650
MluCI	AATT	3 cut(s)	5, 277, 720
MlyI	GAGTC	1 cut(s)	659
MnlI	CCTC	6 cut(s)	7, 101, 113, 136, 151, 565
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	3 cut(s)	276, 444, 594
MslI	CAYNNNNRTG	2 cut(s)	138, 306
MspA1I	CMGCKG	1 cut(s)	187
MspCI	CTTAAG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	598
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
NlaIII	CATG	5 cut(s)	77, 137, 311, 379, 515
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	2 cut(s)	77, 515
PciI	ACATGT	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	565, 655
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PpuMI	RGGWCCY	1 cut(s)	100
PscI	ACATGT	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	2 cut(s)	83, 462
RsaNI	GTAC	2 cut(s)	82, 461
RseI	CAYNNNNRTG	2 cut(s)	138, 306
SaqAI	TTAA	3 cut(s)	276, 444, 594
Sau3AI	GATC	7 cut(s)	169, 175, 220, 364, 575, 622, 685
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	659
SfaNI	GCATC	2 cut(s)	384, 619
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	138, 306
SmlI	CTYRAG	4 cut(s)	92, 104, 443, 569
SmoI	CTYRAG	4 cut(s)	92, 104, 443, 569
Sse9I	AATT	3 cut(s)	5, 277, 720
SsiI	CCGC	2 cut(s)	340, 391
SspMI	CTAG	2 cut(s)	548, 606
StyI	CCWWGG	2 cut(s)	375, 533
TaqI	TCGA	2 cut(s)	78, 346
TasI	AATT	3 cut(s)	5, 277, 720
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	565, 655
Tru1I	TTAA	3 cut(s)	276, 444, 594
Tru9I	TTAA	3 cut(s)	276, 444, 594
TseFI	GTSAC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	17, 23, 260, 431
TspGWI	ACGGA	1 cut(s)	38
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	95
XapI	RAATTY	2 cut(s)	5, 720
XceI	RCATGY	2 cut(s)	77, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	2 cut(s)	548, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.