Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006135

Physical Location & Seq

Genomic Coordinates Forward (+)

16655577 .. 16658412

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGACCGCCACCGAAGCTAAGAATCGCAAAATCAATGTCGGAGATGGAGATGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGGTGGTGTGGTTGGTCTTCTTATTGCTACTGCAATCTCTCTTTATGCAAACACTCTAATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGGTAGGAAGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCTTTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTTGTGCGATTTTCGCTATTGGGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTGGAGTTTCGACCTTCCTCAGTCTCATCTATATTGTTGTGGCAATCGTGCTATCGGTTAGAGATGGAGTAAAAACACCTTCAAGAGATTACGAGATACAAGGATCATCATTGAGCAAACTTTTTACCATCACAGGAGCAGCCGCAAATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAATTCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATTCACAGCGGGTGTTTTACCGATGTACGCAGTTACATTCATCGGATATTGGGCTTATGGATCCTCAACCTCGACCTATCTACTAAACAGTGTTAATGGCCCACTCTGGGTCAAAGCCCTTGCTAACGTCTCTGCTATCCTTCAATCTGTTATCTCTTTGCACATATTTGCGAGTCCAACATATGAGTACATGGACACAAAGTATGGGATCAAAGGAAACCCATTTGCGATAAAGAACCTGCTGTTTAGGATCATGGCGAGAGGCGGGTACATAGCGGTAAGCACGCTTATCTCAGCGCTGTTGCCGTTCCTCGGTGACTTCATGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTCTAGCCAACCACATGTACTATAAGGCAAAGAACAATAAGCTGAATGCTATGCAAAAGCTATGGCATTGGCTTAACGTTGTCTTCTTTAGTTTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCGTTGATTCCAAAAATTTCCATGTTTTTGCAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009628 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015193 GO:0015238 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015824 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0034220 GO:0035524 GO:0042221 GO:0042493 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

442

Amino Acids

48.46

Weight (kDa)

9.43

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 367	2.4e-91	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36590 AT2G39890 AT2G39890 AT2G39890 AT3G55740 AT3G55740 AT3G55740
fragaria_vesca	FvH4_7g23780
malus_domestica	MD01G1145200.v1.1 MD07G1212200.v1.1
prunus_persica	Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1
pyrus_communis	pycom01g16470 pycom07g19520
rosa_chinensis	RchiOBHm_Chr1g0369121
rosa_laevigata	RLG00000027156
rosa_multiflora	Rmu_sc0004250.1_g000014
rosa_roxburghii	Rroxscaffold_4G00287980
rosa_rugosa	Rorug01G0348200
rosa_samantha	Rh1AG355000 Rh1BG318400 Rh1CG332700 Rh1DG349100
rosa_wichuraiana	Rw1G031330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1035
AccII	CGCG	1 cut(s)	149
AciI	CCGC	6 cut(s)	6, 411, 687, 797, 1053, 1064
AclI	AACGTT	1 cut(s)	1230
AclWI	GGATC	5 cut(s)	655, 843, 856, 1004, 1046
AcsI	RAATTY	2 cut(s)	729, 1303
AfaI	GTAC	4 cut(s)	815, 977, 1058, 1172
AfeI	AGCGCT	1 cut(s)	1086
AfiI	CCNNNNNNNGG	2 cut(s)	895, 1100
AflIII	ACRYGT	1 cut(s)	1167
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	627, 709, 788, 932
AluBI	AGCT	7 cut(s)	17, 260, 265, 404, 1195, 1213, 1274
AluI	AGCT	7 cut(s)	17, 260, 265, 404, 1195, 1213, 1274
Alw21I	GWGCWC	1 cut(s)	1136
Alw26I	GTCTC	3 cut(s)	297, 572, 922
AlwI	GGATC	5 cut(s)	655, 843, 856, 1004, 1046
Aor51HI	AGCGCT	1 cut(s)	1086
AoxI	GGCC	1 cut(s)	886
ApeKI	GCWGC	5 cut(s)	96, 683, 1259, 1262, 1271
ApoI	RAATTY	2 cut(s)	729, 1303
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AseI	ATTAAT	1 cut(s)	381
AsiGI	ACCGGT	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	149, 1087
AspS9I	GGNCC	1 cut(s)	887
AsuC2I	CCSGG	1 cut(s)	715
AsuHPI	GGTGA	1 cut(s)	1115
BamHI	GGATCC	1 cut(s)	848
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BbsI	GAAGAC	3 cut(s)	206, 292, 1228
Bbv12I	GWGCWC	1 cut(s)	1136
BbvI	GCAGC	5 cut(s)	108, 695, 1246, 1274, 1283
BccI	CCATC	3 cut(s)	38, 602, 680
BceAI	ACGGC	2 cut(s)	1078, 1274
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	3 cut(s)	297, 572, 922
BfaI	CTAG	2 cut(s)	401, 1157
BfmI	CTRYAG	2 cut(s)	298, 1260
BfoI	RGCGCY	1 cut(s)	1088
BfuAI	ACCTGC	1 cut(s)	1035
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	6 cut(s)	97, 684, 687, 1260, 1263, 1272
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	6 cut(s)	98, 685, 688, 1261, 1264, 1273
Bme1390I	CCNGG	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	3 cut(s)	183, 409, 850
BmrFI	CCNGG	1 cut(s)	715
BmsI	GCATC	1 cut(s)	708
BpiI	GAAGAC	3 cut(s)	206, 292, 1228
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	1099
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	895, 1100
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	752, 1126
Bse3DI	GCAATG	2 cut(s)	477, 1266
BseDI	CCNNGG	1 cut(s)	1099
BseGI	GGATG	2 cut(s)	448, 723
BseLI	CCNNNNNNNGG	2 cut(s)	895, 1100
BseMI	GCAATG	2 cut(s)	477, 1266
BseMII	CTCAG	2 cut(s)	577, 1095
BseNI	ACTGG	2 cut(s)	752, 1126
BseXI	GCAGC	5 cut(s)	108, 695, 1246, 1274, 1283
BsgI	GTGCAG	1 cut(s)	1146
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	888
BshTI	ACCGGT	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	1136
BsiSI	CCGG	2 cut(s)	135, 714
BslI	CCNNNNNNNGG	2 cut(s)	895, 1100
BsmAI	GTCTC	3 cut(s)	297, 572, 922
BsmBI	CGTCTC	1 cut(s)	922
BsmI	GAATGC	2 cut(s)	704, 1204
BsnI	GGCC	1 cut(s)	888
Bso31I	GGTCTC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	1136
Bsp143I	GATC	5 cut(s)	445, 647, 848, 996, 1038
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	6 cut(s)	6, 411, 687, 797, 1053, 1064
BspANI	GGCC	1 cut(s)	888
BspCNI	CTCAG	2 cut(s)	576, 1094
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	3 cut(s)	268, 375, 1110
BspLI	GGNNCC	3 cut(s)	183, 409, 850
BspMAI	CTGCAG	1 cut(s)	1264
BspMI	ACCTGC	1 cut(s)	1035
BspPI	GGATC	5 cut(s)	655, 843, 856, 1004, 1046
BspTNI	GGTCTC	1 cut(s)	297
BsrDI	GCAATG	2 cut(s)	477, 1266
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	752, 1126
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	1099
BssMI	GATC	5 cut(s)	445, 647, 848, 996, 1038
Bst4CI	ACNGT	3 cut(s)	326, 742, 878
BstAPI	GCANNNNNTGC	1 cut(s)	1268
BstC8I	GCNNGC	1 cut(s)	1073
BstDEI	CTNAG	4 cut(s)	18, 261, 563, 1081
BstF5I	GGATG	2 cut(s)	448, 723
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	1088
BstHHI	GCGC	2 cut(s)	149, 1087
BstKTI	GATC	5 cut(s)	448, 650, 851, 999, 1041
BstMAI	GTCTC	3 cut(s)	297, 572, 922
BstMBI	GATC	5 cut(s)	445, 647, 848, 996, 1038
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 410, 419, 503, 1268, 1271
BstNSI	RCATGY	1 cut(s)	1171
BstSCI	CCNGG	1 cut(s)	713
BstSFI	CTRYAG	2 cut(s)	298, 1260
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	5 cut(s)	108, 695, 1246, 1274, 1283
BstV2I	GAAGAC	3 cut(s)	206, 292, 1228
BstX2I	RGATCY	1 cut(s)	848
BstYI	RGATCY	1 cut(s)	848
BsuRI	GGCC	1 cut(s)	888
BtgZI	GCGATG	1 cut(s)	1270
BtsCI	GGATG	2 cut(s)	448, 723
BtsI	GCAGTG	2 cut(s)	78, 1134
BtsIMutI	CAGTG	4 cut(s)	78, 747, 883, 1134
BveI	ACCTGC	1 cut(s)	1035
Cac8I	GCNNGC	1 cut(s)	1073
CciI	TCATGA	3 cut(s)	268, 375, 1110
CfoI	GCGC	2 cut(s)	149, 1087
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	887
Csp6I	GTAC	4 cut(s)	814, 976, 1057, 1171
CspAI	ACCGGT	1 cut(s)	134
CviQI	GTAC	4 cut(s)	814, 976, 1057, 1171
DdeI	CTNAG	4 cut(s)	18, 261, 563, 1081
DpnI	GATC	5 cut(s)	447, 649, 850, 998, 1040
DpnII	GATC	5 cut(s)	445, 647, 848, 996, 1038
EciI	GGCGGA	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	64
Eco47III	AGCGCT	1 cut(s)	1086
EcoRV	GATATC	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	922
FauI	CCCGC	2 cut(s)	790, 1046
FauNDI	CATATG	1 cut(s)	970
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	6 cut(s)	97, 684, 687, 1260, 1263, 1272
FokI	GGATG	2 cut(s)	455, 730
Fsp4HI	GCNGC	6 cut(s)	97, 684, 687, 1260, 1263, 1272
FspBI	CTAG	2 cut(s)	401, 1157
GlaI	GCGC	2 cut(s)	148, 1086
GluI	GCNGC	6 cut(s)	97, 684, 687, 1260, 1263, 1272
HaeII	RGCGCY	1 cut(s)	1088
HaeIII	GGCC	1 cut(s)	888
HapII	CCGG	2 cut(s)	135, 714
HhaI	GCGC	2 cut(s)	149, 1087
Hin6I	GCGC	2 cut(s)	147, 1085
HinP1I	GCGC	2 cut(s)	147, 1085
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	8 cut(s)	22, 101, 315, 390, 514, 961, 1281, 1295
HpaII	CCGG	2 cut(s)	135, 714
HphI	GGTGA	1 cut(s)	1115
Hpy188I	TCNGA	3 cut(s)	41, 833, 1280
Hpy188III	TCNNGA	6 cut(s)	168, 269, 376, 627, 725, 1111
HpyAV	CCTTC	5 cut(s)	325, 568, 633, 766, 938
HpyCH4III	ACNGT	3 cut(s)	326, 742, 878
HpyCH4IV	ACGT	3 cut(s)	54, 915, 1230
HpyCH4V	TGCA	9 cut(s)	230, 245, 358, 949, 1127, 1207, 1262, 1271, 1319
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 410, 419, 503, 1268, 1271
HpyF3I	CTNAG	4 cut(s)	18, 261, 563, 1081
HpySE526I	ACGT	3 cut(s)	54, 915, 1230
HspAI	GCGC	2 cut(s)	147, 1085
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	5 cut(s)	445, 647, 848, 996, 1038
LmnI	GCTCC	1 cut(s)	680
Lsp1109I	GCAGC	5 cut(s)	108, 695, 1246, 1274, 1283
LweI	GCATC	1 cut(s)	708
MaeI	CTAG	2 cut(s)	401, 1157
MaeII	ACGT	3 cut(s)	54, 915, 1230
MaeIII	GTNAC	2 cut(s)	820, 1103
MalI	GATC	5 cut(s)	447, 649, 850, 998, 1040
MboI	GATC	5 cut(s)	445, 647, 848, 996, 1038
MboII	GAAGA	3 cut(s)	206, 297, 1228
MflI	RGATCY	1 cut(s)	848
MhlI	GDGCHC	1 cut(s)	1136
MluCI	AATT	6 cut(s)	90, 174, 382, 729, 788, 1303
MlyI	GAGTC	2 cut(s)	970, 1275
MmeI	TCCRAC	3 cut(s)	19, 173, 989
MnlI	CCTC	9 cut(s)	474, 528, 572, 738, 862, 868, 1043, 1109, 1152
MseI	TTAA	6 cut(s)	366, 381, 416, 759, 882, 1227
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	2 cut(s)	797, 1274
MspI	CCGG	2 cut(s)	135, 714
MspR9I	CCNGG	1 cut(s)	715
Mva1269I	GAATGC	2 cut(s)	704, 1204
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	6 cut(s)	14, 410, 419, 503, 1268, 1271
NciI	CCSGG	1 cut(s)	715
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	5 cut(s)	445, 647, 848, 996, 1038
NlaIV	GGNNCC	3 cut(s)	183, 409, 850
NmuCI	GTSAC	1 cut(s)	1103
NspI	RCATGY	1 cut(s)	1171
PagI	TCATGA	3 cut(s)	268, 375, 1110
PciI	ACATGT	1 cut(s)	1167
PctI	GAATGC	2 cut(s)	704, 1204
PfeI	GAWTC	6 cut(s)	22, 101, 315, 390, 514, 1295
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	6 cut(s)	98, 685, 688, 1261, 1264, 1273
PleI	GAGTC	2 cut(s)	969, 1275
PpsI	GAGTC	2 cut(s)	969, 1275
PscI	ACATGT	1 cut(s)	1167
PshBI	ATTAAT	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	1230
PspN4I	GGNNCC	3 cut(s)	183, 409, 850
PspPI	GGNCC	1 cut(s)	887
PstI	CTGCAG	1 cut(s)	1264
PsuI	RGATCY	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	1274
RsaI	GTAC	4 cut(s)	815, 977, 1058, 1172
RsaNI	GTAC	4 cut(s)	814, 976, 1057, 1171
RseI	CAYNNNNRTG	1 cut(s)	716
SaqAI	TTAA	6 cut(s)	366, 381, 416, 759, 882, 1227
SatI	GCNGC	6 cut(s)	97, 684, 687, 1260, 1263, 1272
Sau3AI	GATC	5 cut(s)	445, 647, 848, 996, 1038
Sau96I	GGNCC	1 cut(s)	887
SchI	GAGTC	2 cut(s)	970, 1275
ScrFI	CCNGG	1 cut(s)	715
SduI	GDGCHC	1 cut(s)	1136
SfaNI	GCATC	1 cut(s)	708
SfcI	CTRYAG	2 cut(s)	298, 1260
SmiMI	CAYNNNNRTG	1 cut(s)	716
Sse9I	AATT	6 cut(s)	90, 174, 382, 729, 788, 1303
SsiI	CCGC	6 cut(s)	6, 411, 687, 797, 1053, 1064
SspMI	CTAG	2 cut(s)	401, 1157
StyD4I	CCNGG	1 cut(s)	713
TaaI	ACNGT	3 cut(s)	326, 742, 878
TaiI	ACGT	3 cut(s)	57, 918, 1233
TaqI	TCGA	3 cut(s)	66, 554, 860
TasI	AATT	6 cut(s)	90, 174, 382, 729, 788, 1303
TatI	WGTACW	2 cut(s)	975, 1170
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	6 cut(s)	22, 101, 315, 390, 514, 1295
Tru1I	TTAA	6 cut(s)	366, 381, 416, 759, 882, 1227
Tru9I	TTAA	6 cut(s)	366, 381, 416, 759, 882, 1227
TscAI	CASTG	4 cut(s)	85, 747, 883, 1134
TseFI	GTSAC	1 cut(s)	1103
TseI	GCWGC	5 cut(s)	96, 683, 1259, 1262, 1271
Tsp45I	GTSAC	1 cut(s)	1103
TspRI	CASTG	4 cut(s)	85, 747, 883, 1134
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	2 cut(s)	729, 1303
XceI	RCATGY	1 cut(s)	1171
XspI	CTAG	2 cut(s)	401, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.