Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006135

Physical Location & Seq

Genomic Coordinates Forward (+)

45217578 .. 45220519

Gene Structure 2942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGTTCCTCTGAGTTGGATAGGCGGTGTAGTCGGTTTGCTTTTAGCCACTGCAATATCACTCTATGCGAATACTCTGATTGCCAAGCTTCATTTATTTGGGGGGAAGAGGCACATCAGATACAGAGATCTTGCGGGGTTTATATACGGAAAGAAAGCTTATGCTCTTACGTGGGGATTGCAGTACGTTAATCTTTTCATGATCAACACTGGATATATCATTTTGGCTGGCCAGGCCCTCAAGGCTGCCTATGTTCTGTTCAGGGATGATGATCTTATGAAGCTACCTTACTTTATTGCTATTGGTGGTTTTGTTTGTGCATTATTTGCCATTGGGATACCACACTTGTCAGCTCTAAGGGTTTGGCTGGGGGTTTCAACAGTCTTGAGCTTGGTCTATATTATTGCAGCACTGGTCCTGTCGCTTAAAGATGGAATCAAAGCACCGCCCAGGGATTATAGCATCCCAGGGACACATATAAGCAAAATATTTACAACAATCGGAGCAGCTGCTAACCTTGTTTTCGCATTCAATACCGGAATGCTTCCAGAGATACAGGCTACAGTGAGGAAGCCAGTTGTTGAAAACATGCTAAAAGCTCTGTACTTTCAGTTCACAGCTGGTGTTTTGCCAATGTATGCAGTAACTTTTGTAGGGTATTGGGCATATGGAAACTCAACGTCAGCTTACTTGCTCAACAGTGTAAACGGACCGGTTTGGGTGAAGGCATTTGCCAATATCTGTGCCTTCCTGCAATCAGTCATTGCTTTGCATATATTTGCAAGTCCAATGTATGAGTATCTGGACACAAGGTTTGGGATTAAAGGAAGTGCATTCAAAATCCAGAACTTGACATTCAGAATTACGGTTAGAGGCGGCTATCTAGCCGTAAACACATTGGTTGCAGCTCTTTTGCCATTCCTTGGAGATTTCATGAGTCTCACAGGAGCCATCAGCACATTCCCTCTTACATTCATTCTCGCAAACCACATGTACCTGGTGGCGAAGAAGGACAAGCTCACTTCATCACAAAAGCTCTGGCATTGGCTAAATATTTGCGTCTTTGGCTTTTTGGCAGTTGCAGCCTTAATATCAGCCTTGAGGCTCATTGCAGTAGATTCCAAAACTTACCATGTCTTTGCTGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009628 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015193 GO:0015238 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015824 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0034220 GO:0035524 GO:0042221 GO:0042493 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

383

Amino Acids

42.04

Weight (kDa)

9.67

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	4 - 367	7.7e-81	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36590 AT2G39890 AT2G39890 AT2G39890 AT3G55740 AT3G55740 AT3G55740
fragaria_vesca	FvH4_7g23780
malus_domestica	MD01G1145200.v1.1 MD07G1212200.v1.1
prunus_persica	Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1
pyrus_communis	pycom01g16470 pycom07g19520
rosa_chinensis	RchiOBHm_Chr1g0369121
rosa_laevigata	RLG00000027156
rosa_multiflora	Rmu_sc0004250.1_g000014
rosa_roxburghii	Rroxscaffold_4G00287980
rosa_rugosa	Rorug01G0348200
rosa_samantha	Rh1AG355000 Rh1BG318400 Rh1CG332700 Rh1DG349100
rosa_wichuraiana	Rw1G031330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	923
AciI	CCGC	4 cut(s)	24, 134, 446, 876
AcoI	YGGCCR	1 cut(s)	229
AfaI	GTAC	3 cut(s)	185, 605, 995
AfiI	CCNNNNNNNGG	1 cut(s)	923
AflIII	ACRYGT	1 cut(s)	990
AgeI	ACCGGT	1 cut(s)	712
AgsI	TTSAA	4 cut(s)	378, 532, 584, 838
AjnI	CCWGG	4 cut(s)	231, 449, 466, 996
Alw26I	GTCTC	1 cut(s)	944
AoxI	GGCC	2 cut(s)	229, 234
ApeKI	GCWGC	6 cut(s)	245, 407, 506, 509, 905, 1082
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
AsiGI	ACCGGT	1 cut(s)	712
AspS9I	GGNCC	3 cut(s)	235, 415, 710
AsuHPI	GGTGA	1 cut(s)	733
AvaII	GGWCC	2 cut(s)	415, 710
BalI	TGGCCA	1 cut(s)	231
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbvI	GCAGC	6 cut(s)	232, 419, 496, 518, 917, 1094
BccI	CCATC	2 cut(s)	425, 959
BceAI	ACGGC	1 cut(s)	872
BciT130I	CCWGG	4 cut(s)	233, 451, 468, 998
BciVI	GTATCC	1 cut(s)	330
BclI	TGATCA	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	944
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	7 cut(s)	246, 408, 507, 510, 877, 906, 1083
BlsI	GCNGC	7 cut(s)	247, 409, 508, 511, 878, 907, 1084
Bme1390I	CCNGG	4 cut(s)	233, 451, 468, 998
Bme18I	GGWCC	2 cut(s)	415, 710
BmgT120I	GGNCC	3 cut(s)	235, 415, 710
BmiI	GGNNCC	2 cut(s)	6, 949
BmrFI	CCNGG	4 cut(s)	233, 451, 468, 998
BmsI	GCATC	1 cut(s)	471
BpuEI	CTTGAG	3 cut(s)	224, 406, 1120
BsaAI	YACGTR	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	5 cut(s)	449, 450, 466, 467, 922
BsaWI	WCCGGW	2 cut(s)	536, 712
Bsc4I	CCNNNNNNNGG	1 cut(s)	923
Bse118I	RCCGGY	1 cut(s)	712
Bse1I	ACTGG	3 cut(s)	214, 417, 575
Bse3DI	GCAATG	2 cut(s)	762, 1107
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	4 cut(s)	233, 451, 468, 998
BseDI	CCNNGG	5 cut(s)	449, 450, 466, 467, 922
BseGI	GGATG	2 cut(s)	271, 462
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	923
BseMI	GCAATG	2 cut(s)	762, 1107
BseNI	ACTGG	3 cut(s)	214, 417, 575
BseXI	GCAGC	6 cut(s)	232, 419, 496, 518, 917, 1094
BseYI	CCCAGC	1 cut(s)	367
BshFI	GGCC	2 cut(s)	231, 236
BshTI	ACCGGT	1 cut(s)	712
BsiSI	CCGG	2 cut(s)	537, 713
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	923
BsmAI	GTCTC	1 cut(s)	944
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	3 cut(s)	527, 546, 833
BsnI	GGCC	2 cut(s)	231, 236
Bsp143I	GATC	4 cut(s)	127, 201, 271, 1144
BspACI	CCGC	4 cut(s)	24, 134, 446, 876
BspANI	GGCC	2 cut(s)	231, 236
BspHI	TCATGA	2 cut(s)	198, 933
BspLI	GGNNCC	2 cut(s)	6, 949
BsrDI	GCAATG	2 cut(s)	762, 1107
BsrFI	RCCGGY	1 cut(s)	712
BsrI	ACTGG	3 cut(s)	214, 417, 575
BssAI	RCCGGY	1 cut(s)	712
BssECI	CCNNGG	5 cut(s)	449, 450, 466, 467, 922
BssMI	GATC	4 cut(s)	127, 201, 271, 1144
BssT1I	CCWWGG	1 cut(s)	922
Bst2UI	CCWGG	4 cut(s)	233, 451, 468, 998
Bst4CI	ACNGT	4 cut(s)	382, 565, 701, 868
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	11, 356
BstF5I	GGATG	2 cut(s)	271, 462
BstKTI	GATC	4 cut(s)	130, 204, 274, 1147
BstMAI	GTCTC	1 cut(s)	944
BstMBI	GATC	4 cut(s)	127, 201, 271, 1144
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 242, 326, 1065, 1082
BstNI	CCWGG	4 cut(s)	233, 451, 468, 998
BstNSI	RCATGY	2 cut(s)	592, 994
BstSCI	CCNGG	4 cut(s)	231, 449, 466, 996
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	6 cut(s)	232, 419, 496, 518, 917, 1094
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	231, 236
BtsCI	GGATG	2 cut(s)	271, 462
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	5 cut(s)	48, 207, 410, 570, 706
Cac8I	GCNNGC	1 cut(s)	229
CciI	TCATGA	2 cut(s)	198, 933
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	3 cut(s)	235, 415, 710
CpoI	CGGWCCG	1 cut(s)	710
CseI	GACGC	1 cut(s)	1048
CsiI	ACCWGGT	1 cut(s)	996
Csp6I	GTAC	3 cut(s)	184, 604, 994
CspAI	ACCGGT	1 cut(s)	712
CspI	CGGWCCG	1 cut(s)	710
CviAII	CATG	5 cut(s)	199, 589, 934, 991, 1133
CviQI	GTAC	3 cut(s)	184, 604, 994
DdeI	CTNAG	2 cut(s)	11, 356
DpnI	GATC	4 cut(s)	129, 203, 273, 1146
DpnII	GATC	4 cut(s)	127, 201, 271, 1144
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	922
Eco47I	GGWCC	2 cut(s)	415, 710
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	4 cut(s)	231, 449, 466, 996
EcoT14I	CCWWGG	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	5 cut(s)	202, 592, 937, 994, 1136
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	5 cut(s)	198, 588, 933, 990, 1132
FauI	CCCGC	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	667
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	7 cut(s)	246, 408, 507, 510, 877, 906, 1083
FokI	GGATG	2 cut(s)	278, 449
Fsp4HI	GCNGC	7 cut(s)	246, 408, 507, 510, 877, 906, 1083
FspBI	CTAG	1 cut(s)	884
GluI	GCNGC	7 cut(s)	246, 408, 507, 510, 877, 906, 1083
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	231, 236
HapII	CCGG	2 cut(s)	537, 713
HgaI	GACGC	1 cut(s)	1048
Hin1II	CATG	5 cut(s)	202, 592, 937, 994, 1136
HindIII	AAGCTT	2 cut(s)	86, 156
HinfI	GANTC	3 cut(s)	435, 937, 1118
HpaII	CCGG	2 cut(s)	537, 713
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	3 cut(s)	615, 706, 892
Hpy188I	TCNGA	5 cut(s)	12, 78, 119, 503, 860
Hpy188III	TCNNGA	6 cut(s)	199, 385, 548, 803, 844, 934
Hpy8I	GTNNAC	3 cut(s)	615, 706, 892
HpyAV	CCTTC	3 cut(s)	718, 757, 1003
HpyCH4III	ACNGT	4 cut(s)	382, 565, 701, 868
HpyCH4IV	ACGT	3 cut(s)	170, 186, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 242, 326, 1065, 1082
HpyF3I	CTNAG	2 cut(s)	11, 356
HpySE526I	ACGT	3 cut(s)	170, 186, 680
Hsp92II	CATG	5 cut(s)	202, 592, 937, 994, 1136
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	127, 201, 271, 1144
LmnI	GCTCC	2 cut(s)	503, 947
Lsp1109I	GCAGC	6 cut(s)	232, 419, 496, 518, 917, 1094
LweI	GCATC	1 cut(s)	471
MabI	ACCWGGT	1 cut(s)	996
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	3 cut(s)	170, 186, 680
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	4 cut(s)	129, 203, 273, 1146
MboI	GATC	4 cut(s)	127, 201, 271, 1144
MboII	GAAGA	2 cut(s)	118, 1018
MflI	RGATCY	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	1 cut(s)	861
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	946
MnlI	CCTC	7 cut(s)	18, 102, 248, 561, 866, 975, 1095
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	4 cut(s)	189, 426, 822, 1088
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	509, 620
MspI	CCGG	2 cut(s)	537, 713
MspR9I	CCNGG	4 cut(s)	233, 451, 468, 998
Mva1269I	GAATGC	3 cut(s)	527, 546, 833
MvaI	CCWGG	4 cut(s)	233, 451, 468, 998
MwoI	GCNNNNNNNGC	5 cut(s)	233, 242, 326, 1065, 1082
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	4 cut(s)	127, 201, 271, 1144
NlaIII	CATG	5 cut(s)	202, 592, 937, 994, 1136
NlaIV	GGNNCC	2 cut(s)	6, 949
NspI	RCATGY	2 cut(s)	592, 994
PagI	TCATGA	2 cut(s)	198, 933
PasI	CCCWGGG	2 cut(s)	450, 467
PciI	ACATGT	1 cut(s)	990
PctI	GAATGC	3 cut(s)	527, 546, 833
PfeI	GAWTC	2 cut(s)	435, 1118
PflMI	CCANNNNNTGG	1 cut(s)	923
PinAI	ACCGGT	1 cut(s)	712
PkrI	GCNGC	7 cut(s)	247, 409, 508, 511, 878, 907, 1084
PleI	GAGTC	1 cut(s)	945
PpsI	GAGTC	1 cut(s)	945
Ppu21I	YACGTR	1 cut(s)	171
PscI	ACATGT	1 cut(s)	990
Psp6I	CCWGG	4 cut(s)	231, 449, 466, 996
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	4 cut(s)	231, 449, 466, 996
PspN4I	GGNNCC	2 cut(s)	6, 949
PspPI	GGNCC	3 cut(s)	235, 415, 710
PsrI	GAACNNNNNNTAC	2 cut(s)	596, 628
PsuI	RGATCY	1 cut(s)	127
PvuII	CAGCTG	2 cut(s)	509, 620
RsaI	GTAC	3 cut(s)	185, 605, 995
RsaNI	GTAC	3 cut(s)	184, 604, 994
Rsr2I	CGGWCCG	1 cut(s)	710
RsrII	CGGWCCG	1 cut(s)	710
SaqAI	TTAA	4 cut(s)	189, 426, 822, 1088
SatI	GCNGC	7 cut(s)	246, 408, 507, 510, 877, 906, 1083
Sau3AI	GATC	4 cut(s)	127, 201, 271, 1144
Sau96I	GGNCC	3 cut(s)	235, 415, 710
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	4 cut(s)	233, 451, 468, 998
SexAI	ACCWGGT	1 cut(s)	996
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	415, 710
SmlI	CTYRAG	3 cut(s)	239, 385, 1099
SmoI	CTYRAG	3 cut(s)	239, 385, 1099
Sse9I	AATT	1 cut(s)	861
SsiI	CCGC	4 cut(s)	24, 134, 446, 876
SspI	AATATT	2 cut(s)	489, 1054
SspMI	CTAG	1 cut(s)	884
StyD4I	CCNGG	4 cut(s)	231, 449, 466, 996
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	4 cut(s)	382, 565, 701, 868
TaiI	ACGT	3 cut(s)	173, 189, 683
TasI	AATT	1 cut(s)	861
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	879
TfiI	GAWTC	2 cut(s)	435, 1118
Tru1I	TTAA	4 cut(s)	189, 426, 822, 1088
Tru9I	TTAA	4 cut(s)	189, 426, 822, 1088
TscAI	CASTG	5 cut(s)	55, 214, 417, 570, 706
TseI	GCWGC	6 cut(s)	245, 407, 506, 509, 905, 1082
TspDTI	ATGAA	6 cut(s)	80, 187, 293, 922, 964, 1014
TspGWI	ACGGA	2 cut(s)	162, 723
TspRI	CASTG	5 cut(s)	55, 214, 417, 570, 706
Van91I	CCANNNNNTGG	1 cut(s)	923
VpaK11BI	GGWCC	2 cut(s)	415, 710
XceI	RCATGY	2 cut(s)	592, 994
XspI	CTAG	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.