Rorug01G0348200
MADS Family

Immediate early response 3-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000139
Physical Location & Seq
Reverse (-)
46602199 .. 46609616
7418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0348200.1

Sequence Viewer

Length: 3633 bp
ATGGACGAAAGCAAAGACAAGGGTGTTGCTGGTGAAATTGTAGCTGGGGCTGTTGGGAGTCAGGGTCAGGTTAGTGAGGAAGGTGGGCCTTGTAATGGGGATGATCTAATGGTGGAGGTTTTCGGGTCTAATGTATATGTGGGTGGAGTTTGTACTAGTGGGGGAGGGGATGAGGAGGATAAGGAGGTGGGTCGTGAGGAGTCGGTTGAGGTTGATATGGGTTCGGGAAGGAATGCGGGGTCTGTGGGTGGAGATGGTGGTGAAGCGGGTTCGGGTGGGAAGGCAGAGTCGGTGGAAGAAAGAAGGGGAGTGGTTGCGGTGGAGGAGGTAGGGGTGGTGGTTAGGGAGGAGAGTTTGAAGGGAGCAGGGGCAGCTGCTGTTGCTGGCTCGGCTGGTGGAGAAACACAGGTAGTTGATGTTGAGAAAGCTGAAAAAGAAAGGAAACAAATTGGAGGACTTCTGGAGGAAGTTTTTGGGCGAGGGATTATGGATGGTGGGAAACAAAAAAAGAAGGTAGTTGATGGTGGGGCTGATTTGAAGGTACAGAAAGTTAGTGTTGCAGATGATGAAGTAAGGAATCCTGGAATTGACACTGTAGCTGCAAGTTCTTCGGAAACAGTGGAGAATTCTTGTGTTCGGACCCGAGTTGTGGAAAACCCTCCAGTTGTCAGTGAAGAAGGTTCGAGTCCCAAACCCTTGAATGGACAAAGGCAAGTATCTGCTGGTGGTGGTGATGTTTCAGGCACGGACAAAGGAGATACTGTGACTTCCGAAGTTGCAGGTGTAGAGATTGGTAAAATTGATGAAAGTAATTCAGTAGGAAAACAGCAGGTTAAGATTGAGTCGCTAGGTGGAAACATCCATACTCACATCAATCTACCTGCACATACAGTTGCTTCGTCCCTGCCAGCTAAAGTAGTTCCTGTAGGTGAAATTGCTGTAACAGATGGAGAGGATCTCTTGAATTCTGAAAAAGATCATTTGAAATTAGAAGAGAGTGTAGAGAACATGTTTCATGATATTGCTCAGGTTGGATCAAATACTTCATCTCTGCCAGCAAAACTTCATCCTGGATGCATAGATCGAGAGGGTCTTTTGAATTTTGAAAGTCATCGGCACTTGAAACCCGAAGAGATTGTAGACAAGAACATGGTCCATGATATGGCCCAGGTTGAATTAAATGGAGGACAAGAAATGGAAGTGGACAACCAAGTTAATGATGCTGAACATGGTGAGTTAGTTTCAGGAAATGATCAGAATTCAAAAATTGAGAAATCATGCATGAACTCTGTTGGGAAGGATCAAAAGTTGAAGTTTGAAGAGAGTTTAAACAATAGTGTGACCACTGACCATGCTCAGTCCAAGACCAATGTTGTACATGAGGTTGAGGTAACTGAAGCTGATATGGATGGTTTATATGGAGAAAGCCTAGACATGGAAGTGGACAGAGATGCTAGTCATAGAGAACAACCAAAACCCAGTGAAGAGAAAATTGTTATTCAAGAAGCTATGCAGCCTGAAAGCTCTGAAATAGTGCCTCAGCTTAGATATGAGCTGCCACAAAAAAATGAAGGTACATTTTCTGTCTCAGATTTAGTTTGGGGTAAAGTGAAGAGCCATCCATGGTGGCCTGGACAGATATTTGATTTTATGGCTGCATCTGAGAAGGCAATGAAACATCATAAGAAGGACTGTTTTTTGGTAGCATATTTTGGGGACCGAACATTTGCTTGGAATGAAGTATCTAGTTTAAAGCCTTTCCGATCTTATTTCTCCCAGGCAGAGAAGCAGTGCAATTCAGAAACATTCCACAAAGCTGTCAATTGTGTTCTGGAAGAAGTTTCAAGGCGTGTAGAATTGGGTCTATCATGCTCATGCATACCAAAAGATGTTTATGAAAAGATCAGATTCCAGATTATTGAAAATGCTGGGATATGCCATGAATCGAGTAGAGTGGACGGAGTAGATGAATCTGCAAGTGCAAGTTCATTTGAATCTGATAAACTACTTAAATATGTAAAAGCTTTAGCACGGTTCCCCTCTGGCGGCAGTGACAAATTAGAACTTGTCATTGCCAAGGCTCATTTGCTGGCATTTTTTCGTTTAAAGGGTTATTGTAGTTTGCCTGAATTCCAGTTTTGTGGAGATTTGTTGGAGAGTAAAACAGATAATTCGCTCTCTGGGGACAAAACATGTCCAGGTGAAATTACTGAGCATGCGACTTATATTGGGAAGGATGATAAGAAGACTGGACCGGAGATTGAGGAACTCAAGTCTAGCACTTCTCATAAACGCAAACATAATCTAAGAGAAGGAGCGTATGCTAAAATGAAAGAAAGAAGCCTGTCAGAATTAATGGGTGGCGAAACAGGTTCGCCAGATGGTAATGATTGGTTGGATGCGAAGGCTTTGCCATCATCTGGCAAGAGACGGAAGGGTGCTGAGTATCAGGCTGCTGATTTAGCCACACAAGATGGGAGGAAAGCTGTTTCCCATTCAACAGTTTCAAACACAACACCTTCACCAAAACCATCGTTTAAGATTGGTGAATGTATCCAGAGAGCTGCTAGCCAGCTATCAGGGTCTACTATAGTGAAGAGCAGCACTGACAGACCTGCTGTGCAGGGATCTGATATTCCCTTCCAGAGTTCTGATGATACTCTTAGAGGAGTGAATAATACAACAAAGTACTCATCTCTAGATGAATTGCTGTCACAACTTCGGTCAGCAGCAGAAGAACCTCTGAAGGAATACAATTCCTTGAGTACTATTGTCAATTTCTTCTCTGATTTTAGGAATTCTGTGGTTGTTGGCCAGAGATCTGGGGTGGTGCTTTCAGTTGTAGACAAAGTTGGTGGTAAAAAGAGGAAGTCAAATTCTGTGCATGGGTTACCTGAGACTTTTGAATTTGATGATATGAATGACACTTATTGGACAGACATGGTAATCCAAAATGGTGGAGAAGAGCAAGCATCACGGAAAAGAAAAACGAAGTATCAACCTGTCATCCTTGGGCAACCAGAAAAGCCCCCTCAAATGGGTCGCAGGCCATACACCAGGAAGAAGTTTTCTCAAGGGAGTCAAGATTTGCCTCCGGAGAAACCTGTTGGCTATGTGGATGAGAATGCACCAGCAGAACTTGTAATGAGCTTCTCTGAGGTGAGCTCTATTCCTTCAGAAACAAACCTGAATAAAATGTTCAAGCGCTTTGGACCTCTGAAGGAATATGAAACAGAAGTTGATAGGGAGAGCAGCCGTGCTAGAGTTGTTTTTAAGAGATGTTCTGATGCCGAAGTTGCTTGCAATAGTGCTGGGAAATTCAACATCTTTGGACAGATCACTGTAAATTACCAGCTCAACTATACTCCCTCTCAGCTCAACTACACGCCATCTATTACGTTCGGTGCATCTACCAGTGCTGCAGCCCAGGATCAGGAAGTGCAACTTGTTTTCCCCTCCCATGATCATGAGATGCATCTTGATCTCTCCACCCATGACCAGATGCAGCTTGATCTTTCCACCCATGACCAGATGCAGCTTGACCTTTCCACCCATGACCACATGCAGCTTGACCTTTCAACCCATGACGAGATGCAACTAGACCTCTCAACATTCGAAGTTAATCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yos1

Protein Analysis

1210

Amino Acids

131.61

Weight (kDa)

4.99

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 531 - 613 4.3e-17 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 770
Acc36I ACCTGC 4 cut(s) 770, 820, 889, 2623
AccB7I CCANNNNNTGG 2 cut(s) 1162, 2420
AccI GTMKAC 3 cut(s) 1140, 2585, 2844
AccIII TCCGGA 1 cut(s) 3094
AciI CCGC 4 cut(s) 236, 266, 317, 2046
AclWI GGATC 5 cut(s) 963, 1042, 1308, 2635, 3438
AcoI YGGCCR 1 cut(s) 2812
AcsI RAATTY 9 cut(s) 625, 964, 1099, 1258, 2129, 2797, 2875, 2906, 3317
AcuI CTGAAG 4 cut(s) 1416, 2765, 3159, 3239
AfaI GTAC 6 cut(s) 154, 543, 1377, 1576, 2690, 2767
AfeI AGCGCT 1 cut(s) 3206
AflIII ACRYGT 2 cut(s) 1008, 2192
AhlI ACTAGT 1 cut(s) 155
AjnI CCWGG 8 cut(s) 580, 1069, 1167, 1630, 1776, 2197, 3056, 3426
AjuI GAANNNNNNNTTGG 2 cut(s) 1714, 1746
Alw21I GWGCWC 1 cut(s) 3167
Alw26I GTCTC 3 cut(s) 1591, 2422, 2891
AlwI GGATC 5 cut(s) 963, 1042, 1308, 2635, 3438
AlwNI CAGNNNCTG 1 cut(s) 377
Ama87I CYCGRG 1 cut(s) 642
Aor13HI TCCGGA 1 cut(s) 3094
Aor51HI AGCGCT 1 cut(s) 3206
AoxI GGCC 5 cut(s) 86, 1164, 1628, 2812, 3047
ApoI RAATTY 9 cut(s) 625, 964, 1099, 1258, 2129, 2797, 2875, 2906, 3317
ArsI GACNNNNNNTTYG 2 cut(s) 1709, 1741
AseI ATTAAT 1 cut(s) 2354
AspLEI GCGC 1 cut(s) 3207
AspS9I GGNCC 7 cut(s) 86, 639, 1153, 1165, 1717, 2252, 3212
AsuHPI GGTGA 9 cut(s) 44, 272, 743, 941, 1244, 2213, 2514, 2558, 3172
AsuII TTCGAA 1 cut(s) 3615
AsuNHI GCTAGC 1 cut(s) 2567
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 5 cut(s) 639, 1153, 1717, 2252, 3212
BalI TGGCCA 1 cut(s) 2814
BanII GRGCYC 1 cut(s) 3167
BbsI GAAGAC 1 cut(s) 2252
Bbv12I GWGCWC 1 cut(s) 3167
BbvCI CCTCAGC 1 cut(s) 1539
BceAI ACGGC 1 cut(s) 3240
BcgI CGANNNNNNTGC 4 cut(s) 591, 625, 2392, 2426
BciT130I CCWGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
BciVI GTATCC 1 cut(s) 2564
BclI TGATCA 2 cut(s) 1252, 3463
BcoDI GTCTC 3 cut(s) 1591, 2422, 2891
BcuI ACTAGT 1 cut(s) 155
BfmI CTRYAG 4 cut(s) 594, 924, 2589, 3420
BfoI RGCGCY 1 cut(s) 3208
BfuAI ACCTGC 4 cut(s) 770, 820, 889, 2623
BfuI GTATCC 1 cut(s) 2564
BglII AGATCT 1 cut(s) 2819
BmcAI AGTACT 2 cut(s) 2690, 2767
Bme1390I CCNGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
Bme18I GGWCC 5 cut(s) 639, 1153, 1717, 2252, 3212
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 7 cut(s) 86, 639, 1153, 1165, 1717, 2252, 3212
BmiI GGNNCC 3 cut(s) 641, 1718, 2036
BmrFI CCNGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
BmrI ACTGGG 1 cut(s) 1473
BmtI GCTAGC 1 cut(s) 2571
BmuI ACTGGG 1 cut(s) 1473
BpiI GAAGAC 1 cut(s) 2252
BplI GAGNNNNNCTC 4 cut(s) 942, 974, 3149, 3181
BpmI CTGGAG 2 cut(s) 482, 645
Bpu10I CCTNAGC 2 cut(s) 1026, 1539
Bpu14I TTCGAA 1 cut(s) 3615
BpuEI CTTGAG 3 cut(s) 2255, 2782, 3057
BsaJI CCNNGG 6 cut(s) 1167, 1622, 1776, 2076, 3010, 3426
BsaWI WCCGGW 2 cut(s) 2254, 3094
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 747, 777
Bse1I ACTGG 5 cut(s) 662, 1479, 2134, 2254, 3414
Bse3DI GCAATG 2 cut(s) 1677, 2070
BseAI TCCGGA 1 cut(s) 3094
BseBI CCWGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
BseDI CCNNGG 6 cut(s) 1167, 1622, 1776, 2076, 3010, 3426
BseMI GCAATG 2 cut(s) 1677, 2070
BseNI ACTGG 5 cut(s) 662, 1479, 2134, 2254, 3414
BseRI GAGGAG 5 cut(s) 188, 212, 338, 362, 2682
BseYI CCCAGC 3 cut(s) 44, 1928, 3311
BsgI GTGCAG 2 cut(s) 867, 2642
BshFI GGCC 5 cut(s) 88, 1166, 1630, 2814, 3049
BsiHKAI GWGCWC 1 cut(s) 3167
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 2 cut(s) 2255, 3095
BslFI GGGAC 4 cut(s) 672, 886, 1730, 2198
BsmAI GTCTC 3 cut(s) 1591, 2422, 2891
BsmBI CGTCTC 1 cut(s) 2422
BsmFI GGGAC 4 cut(s) 672, 886, 1730, 2198
BsmI GAATGC 2 cut(s) 238, 3130
BsnI GGCC 5 cut(s) 88, 1166, 1630, 2814, 3049
BsoBI CYCGRG 1 cut(s) 642
Bsp119I TTCGAA 1 cut(s) 3615
Bsp1286I GDGCHC 1 cut(s) 3167
Bsp13I TCCGGA 1 cut(s) 3094
Bsp1407I TGTACA 1 cut(s) 1375
Bsp19I CCATGG 1 cut(s) 1622
BspACI CCGC 4 cut(s) 236, 266, 317, 2046
BspANI GGCC 5 cut(s) 88, 1166, 1630, 2814, 3049
BspEI TCCGGA 1 cut(s) 3094
BspHI TCATGA 2 cut(s) 1015, 3466
BspLI GGNNCC 3 cut(s) 641, 1718, 2036
BspMAI CTGCAG 1 cut(s) 3424
BspMI ACCTGC 4 cut(s) 770, 820, 889, 2623
BspOI GCTAGC 1 cut(s) 2571
BspPI GGATC 5 cut(s) 963, 1042, 1308, 2635, 3438
BspQI GCTCTTC 3 cut(s) 1607, 2591, 2958
BspT104I TTCGAA 1 cut(s) 3615
BsrDI GCAATG 2 cut(s) 1677, 2070
BsrGI TGTACA 1 cut(s) 1375
BsrI ACTGG 5 cut(s) 662, 1479, 2134, 2254, 3414
BssECI CCNNGG 6 cut(s) 1167, 1622, 1776, 2076, 3010, 3426
BssT1I CCWWGG 3 cut(s) 1622, 2076, 3010
Bst2UI CCWGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
Bst4CI ACNGT 8 cut(s) 595, 619, 763, 892, 1694, 2034, 2503, 3343
Bst6I CTCTTC 7 cut(s) 987, 1125, 1314, 1479, 1607, 2591, 2958
BstAUI TGTACA 1 cut(s) 1375
BstBI TTCGAA 1 cut(s) 3615
BstDSI CCRYGG 1 cut(s) 1622
BstEII GGTNACC 1 cut(s) 2889
BstH2I RGCGCY 1 cut(s) 3208
BstHHI GCGC 1 cut(s) 3207
BstMAI GTCTC 3 cut(s) 1591, 2422, 2891
BstMWI GCNNNNNNNGC 5 cut(s) 371, 380, 389, 2462, 3296
BstNI CCWGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
BstNSI RCATGY 4 cut(s) 1012, 2196, 2219, 3565
BstPI GGTNACC 1 cut(s) 2889
BstSCI CCNGG 8 cut(s) 580, 1069, 1167, 1630, 1776, 2197, 3056, 3426
BstSFI CTRYAG 4 cut(s) 594, 924, 2589, 3420
BstV2I GAAGAC 1 cut(s) 2252
BstX2I RGATCY 3 cut(s) 955, 2627, 2819
BstXI CCANNNNNNTGG 3 cut(s) 2141, 2822, 2957
BstYI RGATCY 3 cut(s) 955, 2627, 2819
BsuI GTATCC 1 cut(s) 2564
BsuRI GGCC 5 cut(s) 88, 1166, 1630, 2814, 3049
BtgI CCRYGG 1 cut(s) 1622
BtsI GCAGTG 2 cut(s) 1796, 2056
BveI ACCTGC 4 cut(s) 770, 820, 889, 2623
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 2 cut(s) 1015, 3466
CfoI GCGC 1 cut(s) 3207
Cfr13I GGNCC 7 cut(s) 86, 639, 1153, 1165, 1717, 2252, 3212
Csp6I GTAC 6 cut(s) 153, 542, 1376, 1575, 2689, 2766
CspCI CAANNNNNGTGG 2 cut(s) 2836, 2871
CviQI GTAC 6 cut(s) 153, 542, 1376, 1575, 2689, 2766
DraI TTTAAA 3 cut(s) 1329, 1752, 2106
EaeI YGGCCR 1 cut(s) 2812
Eam1104I CTCTTC 7 cut(s) 987, 1125, 1314, 1479, 1607, 2591, 2958
EarI CTCTTC 7 cut(s) 987, 1125, 1314, 1479, 1607, 2591, 2958
Ecl136II GAGCTC 1 cut(s) 3165
Eco130I CCWWGG 3 cut(s) 1622, 2076, 3010
Eco24I GRGCYC 1 cut(s) 3167
Eco47I GGWCC 5 cut(s) 639, 1153, 1717, 2252, 3212
Eco47III AGCGCT 1 cut(s) 3206
Eco53kI GAGCTC 1 cut(s) 3165
Eco57I CTGAAG 4 cut(s) 1416, 2765, 3159, 3239
Eco88I CYCGRG 1 cut(s) 642
Eco91I GGTNACC 1 cut(s) 2889
EcoICRI GAGCTC 1 cut(s) 3165
EcoO65I GGTNACC 1 cut(s) 2889
EcoRI GAATTC 5 cut(s) 625, 964, 1258, 2129, 2797
EcoRII CCWGG 8 cut(s) 580, 1069, 1167, 1630, 1776, 2197, 3056, 3426
EcoT14I CCWWGG 3 cut(s) 1622, 2076, 3010
EcoT22I ATGCAT 4 cut(s) 1079, 1283, 1880, 3477
EcoT38I GRGCYC 1 cut(s) 3167
ErhI CCWWGG 3 cut(s) 1622, 2076, 3010
Esp3I CGTCTC 1 cut(s) 2422
FalI AAGNNNNNCTT 2 cut(s) 3429, 3461
FaqI GGGAC 4 cut(s) 672, 886, 1730, 2198
FauI CCCGC 2 cut(s) 229, 259
FbaI TGATCA 2 cut(s) 1252, 3463
FblI GTMKAC 3 cut(s) 1140, 2585, 2844
FriOI GRGCYC 1 cut(s) 3167
GlaI GCGC 1 cut(s) 3206
GsaI CCCAGC 3 cut(s) 48, 1932, 3315
GsuI CTGGAG 2 cut(s) 482, 645
HaeII RGCGCY 1 cut(s) 3208
HaeIII GGCC 5 cut(s) 88, 1166, 1630, 2814, 3049
HapII CCGG 2 cut(s) 2255, 3095
HhaI GCGC 1 cut(s) 3207
Hin6I GCGC 1 cut(s) 3205
HinP1I GCGC 1 cut(s) 3205
HindIII AAGCTT 1 cut(s) 2022
HpaII CCGG 2 cut(s) 2255, 3095
HphI GGTGA 9 cut(s) 44, 272, 743, 941, 1244, 2213, 2514, 2558, 3172
Hpy166II GTNNAC 6 cut(s) 1141, 1204, 1444, 1957, 2586, 2845
Hpy8I GTNNAC 6 cut(s) 1141, 1204, 1444, 1957, 2586, 2845
HpyCH4III ACNGT 8 cut(s) 595, 619, 763, 892, 1694, 2034, 2503, 3343
HpyCH4IV ACGT 1 cut(s) 3398
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 380, 389, 2462, 3296
HpySE526I ACGT 1 cut(s) 3398
HspAI GCGC 1 cut(s) 3205
Kpn2I TCCGGA 1 cut(s) 3094
Ksp22I TGATCA 2 cut(s) 1252, 3463
LguI GCTCTTC 3 cut(s) 1607, 2591, 2958
LmnI GCTCC 2 cut(s) 362, 2315
MaeII ACGT 1 cut(s) 3398
MaeIII GTNAC 7 cut(s) 763, 940, 1339, 1390, 2051, 2712, 2889
MfeI CAATTG 1 cut(s) 1822
MflI RGATCY 3 cut(s) 955, 2627, 2819
MhlI GDGCHC 1 cut(s) 3167
MlsI TGGCCA 1 cut(s) 2814
MluNI TGGCCA 1 cut(s) 2814
MlyI GAGTC 6 cut(s) 67, 209, 296, 694, 851, 3088
MmeI TCCRAC 3 cut(s) 1012, 2133, 2376
Mox20I TGGCCA 1 cut(s) 2814
Mph1103I ATGCAT 4 cut(s) 1079, 1283, 1880, 3477
MroI TCCGGA 1 cut(s) 3094
MscI TGGCCA 1 cut(s) 2814
MslI CAYNNNNRTG 3 cut(s) 1439, 1873, 3465
Msp20I TGGCCA 1 cut(s) 2814
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 2 cut(s) 2255, 3095
MspR9I CCNGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
MssI GTTTAAAC 1 cut(s) 1329
MunI CAATTG 1 cut(s) 1822
Mva1269I GAATGC 2 cut(s) 238, 3130
MvaI CCWGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
MwoI GCNNNNNNNGC 5 cut(s) 371, 380, 389, 2462, 3296
NcoI CCATGG 1 cut(s) 1622
NheI GCTAGC 1 cut(s) 2567
NlaIV GGNNCC 3 cut(s) 641, 1718, 2036
NmeAIII GCCGAG 1 cut(s) 368
NmuCI GTSAC 4 cut(s) 763, 1339, 2051, 2712
NsiI ATGCAT 4 cut(s) 1079, 1283, 1880, 3477
NspI RCATGY 4 cut(s) 1012, 2196, 2219, 3565
NspV TTCGAA 1 cut(s) 3615
PaeI GCATGC 1 cut(s) 2219
PagI TCATGA 2 cut(s) 1015, 3466
PaqCI CACCTGC 1 cut(s) 770
PciI ACATGT 2 cut(s) 1008, 2192
PciSI GCTCTTC 3 cut(s) 1607, 2591, 2958
PctI GAATGC 2 cut(s) 238, 3130
PfeI GAWTC 5 cut(s) 577, 1908, 1943, 1970, 1994
PflMI CCANNNNNTGG 2 cut(s) 1162, 2420
PfoI TCCNGGA 2 cut(s) 580, 1069
PleI GAGTC 6 cut(s) 66, 208, 295, 693, 850, 3087
PmeI GTTTAAAC 1 cut(s) 1329
PpsI GAGTC 6 cut(s) 66, 208, 295, 693, 850, 3087
PscI ACATGT 2 cut(s) 1008, 2192
PshBI ATTAAT 1 cut(s) 2354
Psp124BI GAGCTC 1 cut(s) 3167
Psp6I CCWGG 8 cut(s) 580, 1069, 1167, 1630, 1776, 2197, 3056, 3426
PspEI GGTNACC 1 cut(s) 2889
PspFI CCCAGC 3 cut(s) 44, 1928, 3311
PspGI CCWGG 8 cut(s) 580, 1069, 1167, 1630, 1776, 2197, 3056, 3426
PspN4I GGNNCC 3 cut(s) 641, 1718, 2036
PspPI GGNCC 7 cut(s) 86, 639, 1153, 1165, 1717, 2252, 3212
PstI CTGCAG 1 cut(s) 3424
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 3 cut(s) 955, 2627, 2819
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 6 cut(s) 154, 543, 1377, 1576, 2690, 2767
RsaNI GTAC 6 cut(s) 153, 542, 1376, 1575, 2689, 2766
RseI CAYNNNNRTG 3 cut(s) 1439, 1873, 3465
SacI GAGCTC 1 cut(s) 3167
SapI GCTCTTC 3 cut(s) 1607, 2591, 2958
Sau96I GGNCC 7 cut(s) 86, 639, 1153, 1165, 1717, 2252, 3212
ScaI AGTACT 2 cut(s) 2690, 2767
SchI GAGTC 6 cut(s) 67, 209, 296, 694, 851, 3088
ScrFI CCNGG 8 cut(s) 582, 1071, 1169, 1632, 1778, 2199, 3058, 3428
SduI GDGCHC 1 cut(s) 3167
SfcI CTRYAG 4 cut(s) 594, 924, 2589, 3420
SfuI TTCGAA 1 cut(s) 3615
SinI GGWCC 5 cut(s) 639, 1153, 1717, 2252, 3212
SmiMI CAYNNNNRTG 3 cut(s) 1439, 1873, 3465
SmlI CTYRAG 3 cut(s) 2270, 2761, 3072
SmoI CTYRAG 3 cut(s) 2270, 2761, 3072
SpeI ACTAGT 1 cut(s) 155
SphI GCATGC 1 cut(s) 2219
SsiI CCGC 4 cut(s) 236, 266, 317, 2046
SstI GAGCTC 1 cut(s) 3167
StyD4I CCNGG 8 cut(s) 580, 1069, 1167, 1630, 1776, 2197, 3056, 3426
StyI CCWWGG 3 cut(s) 1622, 2076, 3010
TaaI ACNGT 8 cut(s) 595, 619, 763, 892, 1694, 2034, 2503, 3343
TaiI ACGT 1 cut(s) 3401
TaqI TCGA 4 cut(s) 683, 1084, 1946, 3615
TaqII GACCGA 2 cut(s) 1734, 2712
TatI WGTACW 4 cut(s) 152, 1375, 2688, 2765
TauI GCSGC 1 cut(s) 2049
TfiI GAWTC 5 cut(s) 577, 1908, 1943, 1970, 1994
TseFI GTSAC 4 cut(s) 763, 1339, 2051, 2712
Tsp45I GTSAC 4 cut(s) 763, 1339, 2051, 2712
TspGWI ACGGA 4 cut(s) 761, 1974, 2446, 2992
Van91I CCANNNNNTGG 2 cut(s) 1162, 2420
VpaK11BI GGWCC 5 cut(s) 639, 1153, 1717, 2252, 3212
VspI ATTAAT 1 cut(s) 2354
XapI RAATTY 9 cut(s) 625, 964, 1099, 1258, 2129, 2797, 2875, 2906, 3317
XbaI TCTAGA 1 cut(s) 2698
XceI RCATGY 4 cut(s) 1012, 2196, 2219, 3565
XmiI GTMKAC 3 cut(s) 1140, 2585, 2844
ZrmI AGTACT 2 cut(s) 2690, 2767
Zsp2I ATGCAT 4 cut(s) 1079, 1283, 1880, 3477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.