Rh5AG498500

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000139
Physical Location & Seq
Forward (+)
84519097 .. 84526853
7757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG498500.1

Sequence Viewer

Length: 372 bp
ATGATCGAAAATGAAGATATGAATGCAAAACCGATAGGAACTCAGGTTCTCAAAGGAGGACACCTTTGTATATGGTCAAATGGTGAATTTTGGGTGATGAAAGAGTATGCGGTCCCTGAATCTTGGGTTAAAATGTTTCAATTTAGTGTGCTTGATTTACCAGATGTGTTTGCTTCAACGTTTGGTTGGATTCCTGTTTTTGTTACACAAGGCGGTACAGTTGTGATCCTCCTTGACAAGGAGTTGGTCAGAATTGAATGTCATAGAGAACAGAAGCCTGTCTGTAGCGGTCGGTATAAGATTGAGGGTGCAATGCAGGGTTTGTTTCAATATGCTGCGACGGTATATGATGAAACTCTACTTTCGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

123

Amino Acids

13.95

Weight (kDa)

4.92

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 110, 213, 288
AclI AACGTT 1 cut(s) 179
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 4 cut(s) 140, 177, 257, 329
AloI GAACNNNNNNTCC 2 cut(s) 30, 62
AlwI GGATC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 95, 106
AvaII GGWCC 1 cut(s) 112
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BbvI GCAGC 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 283
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 322
Bsh1285I CGRYCG 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 3, 225
BspACI CCGC 3 cut(s) 110, 213, 288
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 318
BssMI GATC 2 cut(s) 3, 225
Bst4CI ACNGT 2 cut(s) 220, 343
BstDEI CTNAG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 236
BstKTI GATC 2 cut(s) 6, 228
BstMBI GATC 2 cut(s) 3, 225
BstMCI CGRYCG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 216
CviJI RGCY 1 cut(s) 277
CviKI_1 RGCY 1 cut(s) 277
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 5, 227
DpnII GATC 2 cut(s) 3, 225
Eco47I GGWCC 1 cut(s) 112
EcoNI CCTNNNNNAGG 1 cut(s) 236
FaqI GGGAC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 336
HinfI GANTC 2 cut(s) 119, 190
HphI GGTGA 2 cut(s) 95, 106
Hpy188I TCNGA 1 cut(s) 251
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 220, 343
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 26, 311, 316
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 179
Kzo9I GATC 2 cut(s) 3, 225
LpnPI CCDG 6 cut(s) 29, 129, 174, 207, 291, 302
Lsp1109I GCAGC 1 cut(s) 322
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 5, 227
MboI GATC 2 cut(s) 3, 225
MboII GAAGA 1 cut(s) 26
MluCI AATT 3 cut(s) 86, 140, 252
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 3 cut(s) 50, 239, 298
MseI TTAA 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 28
NdeII GATC 2 cut(s) 3, 225
NlaIV GGNNCC 1 cut(s) 114
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 119, 190
PkrI GCNGC 1 cut(s) 337
Psp1406I AACGTT 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 112
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 3, 225
Sau96I GGNCC 1 cut(s) 112
SetI ASST 3 cut(s) 48, 66, 182
SfcI CTRYAG 1 cut(s) 283
SinI GGWCC 1 cut(s) 112
Sse9I AATT 3 cut(s) 86, 140, 252
SsiI CCGC 3 cut(s) 110, 213, 288
TaaI ACNGT 2 cut(s) 220, 343
TaiI ACGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 6
TasI AATT 3 cut(s) 86, 140, 252
TfiI GAWTC 2 cut(s) 119, 190
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 4 cut(s) 27, 35, 113, 366
VpaK11BI GGWCC 1 cut(s) 112
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.