Rorug05G0444300

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000139
Physical Location & Seq
Forward (+)
61541409 .. 61543013
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0444300.1

Sequence Viewer

Length: 816 bp
ATGTTTAATGAAGTCCTATTATATGGTAAATTTTCAGTTGAAGGGTTGGCTGCATTGCAAGGAAAGTTCAGTATTCTACAGGAATGGACTGGAGACCCTTGCCTCCCATCTCCATATACATGGGACTGGGTCAATTGTACTACTGATGACACACCGCGAGTAACAGCACTGTATTTGAATGGCTATGGTCTATCTGGGCAACTTCCAGACTTCAGTTCCATGGATGCTCTTGTCACAATAGACATGCACAACAACAGCCTGAGTGGAGCAATTCCTAGTTTTCTTGGCACCTTGCCCAATCTAAAAGAACTGAACTTAAGAGACAATAAACTGAGTGGACCAGTACCCTCCACAATATCAAAGAATACCAAGCTGAAGTTAGAGGATTCTGGCAATCCTAATCTATGTGCCTCTGGCGAGTCCTGTAAGACAATTGCTAGCAATGATAGCCCCTCTTCATCAGGCAGCAGTGGCACTAAGAAGAAAAGCAGCAAACTACCATTAATTCTTGGAATAGCAATTCCAGCTTTTGCGGCGTTCTGGGTTATTGTGGTAGTGTGTGTTTGTGTAGTAACTTCAAATAAGAGAAGAAAAGCAGCCGTCGGAGCAATCGGCACAGGACAAATTGGTGTGGCCAACATGCCTAATAGCGCTCAACAAGGGGTGCAAATGAACGGGCAAATGGCGGGTAAATTCGGAGAAGCTGTGATGAACCAGTACGAGGTCAACGTTGAGGAGCAGGCAACCCCAGACTATCAGCAACAAGTAACCCCAGAACATGTACAAGATCAAGACGATAGGCGATTGCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

271

Amino Acids

29.15

Weight (kDa)

5.41

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 1 cut(s) 157
AciI CCGC 3 cut(s) 155, 533, 686
AclI AACGTT 1 cut(s) 729
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 2 cut(s) 29, 692
AcuI CTGAAG 2 cut(s) 196, 395
AfaI GTAC 4 cut(s) 139, 345, 719, 783
AfeI AGCGCT 1 cut(s) 652
AfiI CCNNNNNNNGG 1 cut(s) 721
AflII CTTAAG 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 778
AgsI TTSAA 3 cut(s) 41, 178, 579
AluBI AGCT 3 cut(s) 373, 527, 704
AluI AGCT 3 cut(s) 373, 527, 704
Alw26I GTCTC 2 cut(s) 87, 315
Aor51HI AGCGCT 1 cut(s) 652
AoxI GGCC 1 cut(s) 633
ApeKI GCWGC 4 cut(s) 50, 465, 489, 596
ApoI RAATTY 2 cut(s) 29, 692
AseI ATTAAT 1 cut(s) 503
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 1 cut(s) 338
AsuNHI GCTAGC 1 cut(s) 437
AvaII GGWCC 1 cut(s) 338
BalI TGGCCA 1 cut(s) 635
BanI GGYRCC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 37, 477, 501, 608
BccI CCATC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 87, 315
BfaI CTAG 2 cut(s) 276, 438
BfmI CTRYAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 654
BfrI CTTAAG 1 cut(s) 316
BisI GCNGC 5 cut(s) 51, 466, 490, 534, 597
BlsI GCNGC 5 cut(s) 52, 467, 491, 535, 598
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 214
BmtI GCTAGC 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 721
Bse1I ACTGG 4 cut(s) 94, 131, 341, 715
Bse3DI GCAATG 2 cut(s) 53, 448
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 721
BseMI GCAATG 2 cut(s) 53, 448
BseMII CTCAG 2 cut(s) 251, 323
BseNI ACTGG 4 cut(s) 94, 131, 341, 715
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 4 cut(s) 37, 477, 501, 608
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 635
BshNI GGYRCC 1 cut(s) 287
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 721
BsmAI GTCTC 2 cut(s) 87, 315
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 1 cut(s) 635
Bso31I GGTCTC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 1 cut(s) 787
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 3 cut(s) 155, 533, 686
BspANI GGCC 1 cut(s) 635
BspCNI CTCAG 2 cut(s) 252, 324
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 287
BspTI CTTAAG 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 87
BsrDI GCAATG 2 cut(s) 53, 448
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 4 cut(s) 94, 131, 341, 715
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 787
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 460
BstAFI CTTAAG 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 781
BstC8I GCNNGC 2 cut(s) 439, 741
BstDEI CTNAG 3 cut(s) 260, 332, 477
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 1 cut(s) 790
BstMAI GTCTC 2 cut(s) 87, 315
BstMBI GATC 1 cut(s) 787
BstMWI GCNNNNNNNGC 5 cut(s) 447, 471, 524, 533, 605
BstNSI RCATGY 3 cut(s) 247, 643, 782
BstSFI CTRYAG 1 cut(s) 77
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 4 cut(s) 37, 477, 501, 608
BstXI CCANNNNNNTGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 635
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 2 cut(s) 167, 475
Cac8I GCNNGC 2 cut(s) 439, 741
CfoI GCGC 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 4 cut(s) 138, 344, 718, 782
CviAII CATG 5 cut(s) 120, 220, 244, 640, 779
CviJI RGCY 9 cut(s) 50, 183, 258, 373, 450, 527, 599, 635, 704
CviKI_1 RGCY 9 cut(s) 50, 183, 258, 373, 450, 527, 599, 635, 704
CviQI GTAC 4 cut(s) 138, 344, 718, 782
DdeI CTNAG 3 cut(s) 260, 332, 477
DpnI GATC 1 cut(s) 789
DpnII GATC 1 cut(s) 787
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 338
Eco47III AGCGCT 1 cut(s) 652
Eco57I CTGAAG 2 cut(s) 196, 395
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 5 cut(s) 123, 223, 247, 643, 782
FaqI GGGAC 1 cut(s) 137
FatI CATG 5 cut(s) 119, 219, 243, 639, 778
FauI CCCGC 1 cut(s) 679
Fnu4HI GCNGC 5 cut(s) 51, 466, 490, 534, 597
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 5 cut(s) 51, 466, 490, 534, 597
FspBI CTAG 2 cut(s) 276, 438
GlaI GCGC 1 cut(s) 652
GluI GCNGC 5 cut(s) 51, 466, 490, 534, 597
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 1 cut(s) 635
HhaI GCGC 1 cut(s) 653
Hin1II CATG 5 cut(s) 123, 223, 247, 643, 782
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 2 cut(s) 386, 419
Hpy166II GTNNAC 2 cut(s) 338, 727
Hpy188I TCNGA 2 cut(s) 605, 698
Hpy188III TCNNGA 2 cut(s) 206, 791
Hpy8I GTNNAC 2 cut(s) 338, 727
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 5 cut(s) 53, 58, 247, 667, 808
HpyF10VI GCNNNNNNNGC 5 cut(s) 447, 471, 524, 533, 605
HpyF3I CTNAG 3 cut(s) 260, 332, 477
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 5 cut(s) 123, 223, 247, 643, 782
HspAI GCGC 1 cut(s) 651
Kzo9I GATC 1 cut(s) 787
LmnI GCTCC 3 cut(s) 266, 605, 736
Lsp1109I GCAGC 4 cut(s) 37, 477, 501, 608
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 276, 438
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 4 cut(s) 160, 232, 571, 766
MalI GATC 1 cut(s) 789
MboI GATC 1 cut(s) 787
MboII GAAGA 3 cut(s) 447, 493, 600
MfeI CAATTG 2 cut(s) 133, 432
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 8 cut(s) 29, 133, 270, 432, 504, 519, 624, 692
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 7 cut(s) 113, 358, 376, 421, 463, 715, 727
Mox20I TGGCCA 1 cut(s) 635
MscI TGGCCA 1 cut(s) 635
MseI TTAA 3 cut(s) 6, 317, 503
MslI CAYNNNNRTG 1 cut(s) 118
Msp20I TGGCCA 1 cut(s) 635
MspCI CTTAAG 1 cut(s) 316
MunI CAATTG 2 cut(s) 133, 432
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 5 cut(s) 447, 471, 524, 533, 605
NcoI CCATGG 1 cut(s) 219
NdeII GATC 1 cut(s) 787
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 5 cut(s) 123, 223, 247, 643, 782
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 3 cut(s) 247, 643, 782
PciI ACATGT 1 cut(s) 778
PcsI WCGNNNNNNNCGW 1 cut(s) 726
PfeI GAWTC 1 cut(s) 386
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 5 cut(s) 52, 467, 491, 535, 598
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PscI ACATGT 1 cut(s) 778
PshBI ATTAAT 1 cut(s) 503
Psp1406I AACGTT 1 cut(s) 729
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 338
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 4 cut(s) 139, 345, 719, 783
RsaNI GTAC 4 cut(s) 138, 344, 718, 782
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 3 cut(s) 6, 317, 503
SatI GCNGC 5 cut(s) 51, 466, 490, 534, 597
Sau3AI GATC 1 cut(s) 787
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 428
SetI ASST 6 cut(s) 293, 375, 529, 706, 726, 732
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 77
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 8 cut(s) 29, 133, 270, 432, 504, 519, 624, 692
SsiI CCGC 3 cut(s) 155, 533, 686
SspMI CTAG 2 cut(s) 276, 438
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 732
TasI AATT 8 cut(s) 29, 133, 270, 432, 504, 519, 624, 692
TatI WGTACW 2 cut(s) 137, 781
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 3 cut(s) 6, 317, 503
Tru9I TTAA 3 cut(s) 6, 317, 503
TscAI CASTG 2 cut(s) 174, 475
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 4 cut(s) 50, 465, 489, 596
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 24, 447, 686, 725
TspRI CASTG 2 cut(s) 174, 475
Tth111I GACNNNGTC 1 cut(s) 128
Vha464I CTTAAG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 338
VspI ATTAAT 1 cut(s) 503
XapI RAATTY 2 cut(s) 29, 692
XceI RCATGY 3 cut(s) 247, 643, 782
XspI CTAG 2 cut(s) 276, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.