FvH4_3g42302

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000139
Physical Location & Seq
Forward (+)
35315697 .. 35316290
594 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42302.t1

Sequence Viewer

Length: 507 bp
ATGGAGTTTACAGTTCACATATTTTCAACCAGGGATAGCTCATGGAAAGATATCAGATTTCCTCACTCCTCGTTCCCTTGTGGCGATGATGGCAAGGTTCTGTTAGTTTCAAATGGAGCAATTCATTGGGTCTGTACTGGGATTCCAGAAGCTATATCTGCTTTTGATTTGGTAAGCGAAGAGTTCCGTCAATTGCCATTGCCTCGTGGCCTGAATGGAAGAAGGATATGGACTCAGGTTCTTGTAGGAGGACACCTTTGTGTACGGTCACACGATGAGTTTTGGGTGATGAAAGAGTATAGGGTCCCTGAATCTTGGGTTAAAATGTTTCAGTTTAGTGTGGTTGATTTACCAAATGTGTTTGGTTTAGTGGATGGTTGGGTTCCTGCTTTTGTTACAGAAGGCAGTACAGTTGTGATGCTCCATGGCAAGGAGTTGGCCAGGATTAAATGTCATAGAGAAGGGAAGCCTGTATATATGTACTGGCCGGCTATAGCTAAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

169

Amino Acids

19.2

Weight (kDa)

7.04

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 438, 485
AfaI GTAC 4 cut(s) 136, 264, 409, 482
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 2 cut(s) 27, 111
AjnI CCWGG 2 cut(s) 29, 440
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 3 cut(s) 39, 152, 497
AluI AGCT 3 cut(s) 39, 152, 497
AoxI GGCC 3 cut(s) 208, 438, 485
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 440
BauI CACGAG 1 cut(s) 204
BccI CCATC 2 cut(s) 83, 368
BciT130I CCWGG 2 cut(s) 31, 442
BfmI CTRYAG 1 cut(s) 492
Bme1390I CCNGG 2 cut(s) 31, 442
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 3 cut(s) 305, 306, 384
BmrFI CCNGG 2 cut(s) 31, 442
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 408
BmuI ACTGGG 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 30, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse118I RCCGGY 1 cut(s) 487
Bse1I ACTGG 2 cut(s) 142, 488
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 2 cut(s) 31, 442
BseDI CCNNGG 2 cut(s) 30, 424
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 2 cut(s) 142, 488
BseRI GAGGAG 1 cut(s) 58
BshFI GGCC 3 cut(s) 210, 440, 487
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 430
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 3 cut(s) 210, 440, 487
Bsp19I CCATGG 1 cut(s) 424
BspANI GGCC 3 cut(s) 210, 440, 487
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 305, 306, 384
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 487
BsrI ACTGG 2 cut(s) 142, 488
BssAI RCCGGY 1 cut(s) 487
BssECI CCNNGG 2 cut(s) 30, 424
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 424
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 31, 442
Bst4CI ACNGT 3 cut(s) 13, 267, 412
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 1 cut(s) 379
BstMWI GCNNNNNNNGC 2 cut(s) 90, 158
BstNI CCWGG 2 cut(s) 31, 442
BstSCI CCNGG 2 cut(s) 29, 440
BstSFI CTRYAG 1 cut(s) 492
BsuRI GGCC 3 cut(s) 210, 440, 487
BtgI CCRYGG 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 489
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 4 cut(s) 135, 263, 408, 481
CviAII CATG 2 cut(s) 42, 425
CviJI RGCY 8 cut(s) 39, 152, 210, 440, 469, 487, 491, 497
CviKI_1 RGCY 8 cut(s) 39, 152, 210, 440, 469, 487, 491, 497
CviQI GTAC 4 cut(s) 135, 263, 408, 481
DdeI CTNAG 1 cut(s) 234
EaeI YGGCCR 2 cut(s) 438, 485
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 424
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 29, 440
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 2 cut(s) 45, 428
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 41, 424
FokI GGATG 1 cut(s) 386
HaeIII GGCC 3 cut(s) 210, 440, 487
HapII CCGG 1 cut(s) 488
Hin1II CATG 2 cut(s) 45, 428
HinfI GANTC 3 cut(s) 142, 232, 311
HpaII CCGG 1 cut(s) 488
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 9, 16, 263
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 3 cut(s) 9, 16, 263
HpyAV CCTTC 3 cut(s) 216, 395, 455
HpyCH4III ACNGT 3 cut(s) 13, 267, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 158
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 2 cut(s) 45, 428
KflI GGGWCCC 1 cut(s) 304
KroI GCCGGC 1 cut(s) 487
KroNI GCCGGC 1 cut(s) 489
LmnI GCTCC 2 cut(s) 116, 426
LweI GCATC 1 cut(s) 408
MaeIII GTNAC 2 cut(s) 267, 394
MboII GAAGA 2 cut(s) 191, 231
MfeI CAATTG 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 2 cut(s) 120, 191
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 4 cut(s) 72, 79, 213, 242
Mox20I TGGCCA 1 cut(s) 440
MroNI GCCGGC 1 cut(s) 487
MscI TGGCCA 1 cut(s) 440
MseI TTAA 3 cut(s) 321, 447, 505
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 440
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 2 cut(s) 31, 442
MunI CAATTG 1 cut(s) 191
MvaI CCWGG 2 cut(s) 31, 442
MwoI GCNNNNNNNGC 2 cut(s) 90, 158
NaeI GCCGGC 1 cut(s) 489
NcoI CCATGG 1 cut(s) 424
NgoMIV GCCGGC 1 cut(s) 487
NlaIII CATG 2 cut(s) 45, 428
NlaIV GGNNCC 3 cut(s) 305, 306, 384
NmuCI GTSAC 1 cut(s) 267
OliI CACNNNNGTG 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 489
PfeI GAWTC 2 cut(s) 142, 311
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 304
Psp6I CCWGG 2 cut(s) 29, 440
PspGI CCWGG 2 cut(s) 29, 440
PspN4I GGNNCC 3 cut(s) 305, 306, 384
PspPI GGNCC 1 cut(s) 304
PspPPI RGGWCCY 1 cut(s) 304
RsaI GTAC 4 cut(s) 136, 264, 409, 482
RsaNI GTAC 4 cut(s) 135, 263, 408, 481
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 3 cut(s) 321, 447, 505
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 2 cut(s) 31, 442
SetI ASST 6 cut(s) 41, 99, 154, 240, 258, 499
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 2 cut(s) 120, 191
StyD4I CCNGG 2 cut(s) 29, 440
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 3 cut(s) 13, 267, 412
TasI AATT 2 cut(s) 120, 191
TatI WGTACW 3 cut(s) 134, 407, 480
TfiI GAWTC 2 cut(s) 142, 311
Tru1I TTAA 3 cut(s) 321, 447, 505
Tru9I TTAA 3 cut(s) 321, 447, 505
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 2 cut(s) 113, 305
TspGWI ACGGA 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.