Rmu_sc0007791.1_g000010

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007791.1
OG0000139
Physical Location & Seq
Forward (+)
49457 .. 50560
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007791.1_g000010.1.cds

Sequence Viewer

Length: 915 bp
atgggtcaagatccctttggaaaatctcacctccaactagcttcacagctgagaaccctccgtagaaaagtcctcctcacctcataccctaaactcagagatccaggtccaatttcctattctcgttacggtagcttttcaaagctaccccctcgatttcaatcgttagaggatgacttttcagtcaaaaatttcaccatcccatgtgagaagagtaaggatataagagtaatggcctcctgcaacggtttggtacttctaggcgaaagcgataattgtattgattacaaaagcttgtctatctggaacctgtcgactggattcttccgcaacctacctggtccaagttccctggcgacgtcaagacaatcatccaatgatgagtacctgttgtttgtatattctggttttggtcatgtgtccgccagtgacgactacaaacttgttttcataaaacctgcccttggtgggacgcttttgaatggagcaattcactgggtcattcgccgtagaaatgagaattgggaccaagttatatatgcgtttgatttggctgaggagcggtttcggcaagtgccattgccgcctgttttgtgggaaaatgaagatgacaggaatccgactgagataaaaaactctcgttcatttgggaggatccctttgcatcttgtctcgggagctttttcatcgcaggaacgatcatacagtagatgggatatgtgtttcattacagaaagcgataaaatggtgttaatactgaataaggagttgttttggattgaatgccgtaatgaagagaagccgatctgcagcagacggtatagggtggaggaggtgcaacctgaggtgtccgagtgttcgttttatgttgtcgcggccgtatatgatgaaactctagtttctgtaactgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

304

Amino Acids

34.96

Weight (kDa)

6.17

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 562
AccI GTMKAC 1 cut(s) 314
AccII CGCG 1 cut(s) 875
AciI CCGC 5 cut(s) 328, 423, 562, 584, 875
AclWI GGATC 4 cut(s) 5, 95, 649, 662
AcoI YGGCCR 1 cut(s) 876
AcsI RAATTY 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 2 cut(s) 255, 386
AfiI CCNNNNNNNGG 2 cut(s) 464, 468
AgsI TTSAA 4 cut(s) 141, 161, 481, 782
AjnI CCWGG 3 cut(s) 103, 337, 351
AjuI GAANNNNNNNTTGG 4 cut(s) 103, 135, 505, 537
AluBI AGCT 6 cut(s) 41, 49, 135, 145, 294, 680
AluI AGCT 6 cut(s) 41, 49, 135, 145, 294, 680
Alw26I GTCTC 1 cut(s) 676
AlwI GGATC 4 cut(s) 5, 95, 649, 662
Ama87I CYCGRG 1 cut(s) 673
AoxI GGCC 2 cut(s) 234, 876
ApeKI GCWGC 1 cut(s) 810
ApoI RAATTY 1 cut(s) 190
AspS9I GGNCC 3 cut(s) 107, 341, 526
AsuHPI GGTGA 3 cut(s) 20, 70, 187
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 3 cut(s) 107, 341, 526
AxyI CCTNAGG 1 cut(s) 843
BamHI GGATCC 1 cut(s) 654
BbvCI CCTCAGC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 822
BccI CCATC 2 cut(s) 206, 705
BceAI ACGGC 3 cut(s) 492, 771, 863
BciT130I CCWGG 3 cut(s) 105, 339, 353
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 3 cut(s) 38, 260, 896
BfmI CTRYAG 1 cut(s) 808
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 3 cut(s) 584, 811, 876
BlsI GCNGC 3 cut(s) 585, 812, 877
Bme1390I CCNGG 3 cut(s) 105, 339, 353
Bme18I GGWCC 3 cut(s) 107, 341, 526
BmeT110I CYCGRG 1 cut(s) 673
BmgT120I GGNCC 3 cut(s) 107, 341, 526
BmiI GGNNCC 3 cut(s) 308, 527, 656
BmrFI CCNGG 3 cut(s) 105, 339, 353
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 1 cut(s) 673
BmuI ACTGGG 1 cut(s) 505
Bpu10I CCTNAGC 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 351, 463
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 468
Bse1I ACTGG 3 cut(s) 322, 426, 500
Bse21I CCTNAGG 1 cut(s) 843
Bse3DI GCAATG 1 cut(s) 578
Bse8I GATNNNNATC 1 cut(s) 160
BseBI CCWGG 3 cut(s) 105, 339, 353
BseDI CCNNGG 2 cut(s) 351, 463
BseGI GGATG 3 cut(s) 178, 198, 371
BseJI GATNNNNATC 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 464, 468
BseMI GCAATG 1 cut(s) 578
BseMII CTCAG 5 cut(s) 41, 109, 546, 615, 834
BseNI ACTGG 3 cut(s) 322, 426, 500
BseRI GAGGAG 3 cut(s) 65, 572, 845
BseX3I CGGCCG 1 cut(s) 876
BseXI GCAGC 1 cut(s) 822
Bsh1236I CGCG 1 cut(s) 875
Bsh1285I CGRYCG 1 cut(s) 879
BshFI GGCC 2 cut(s) 236, 878
BsiEI CGRYCG 1 cut(s) 879
BsiHKCI CYCGRG 1 cut(s) 673
BslFI GGGAC 2 cut(s) 484, 539
BslI CCNNNNNNNGG 2 cut(s) 464, 468
BsmAI GTCTC 1 cut(s) 676
BsmFI GGGAC 2 cut(s) 484, 539
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 2 cut(s) 236, 878
BsoBI CYCGRG 1 cut(s) 673
Bsp143I GATC 5 cut(s) 10, 100, 654, 698, 804
BspACI CCGC 5 cut(s) 328, 423, 562, 584, 875
BspANI GGCC 2 cut(s) 236, 878
BspCNI CTCAG 5 cut(s) 42, 108, 547, 616, 835
BspFNI CGCG 1 cut(s) 875
BspLI GGNNCC 3 cut(s) 308, 527, 656
BspMAI CTGCAG 1 cut(s) 812
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 4 cut(s) 5, 95, 649, 662
BsrBI CCGCTC 1 cut(s) 562
BsrDI GCAATG 1 cut(s) 578
BsrI ACTGG 3 cut(s) 322, 426, 500
BssECI CCNNGG 2 cut(s) 351, 463
BssMI GATC 5 cut(s) 10, 100, 654, 698, 804
BssNI GRCGYC 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 463
Bst2UI CCWGG 3 cut(s) 105, 339, 353
Bst4CI ACNGT 4 cut(s) 131, 248, 707, 819
Bst6I CTCTTC 2 cut(s) 206, 789
BstACI GRCGYC 1 cut(s) 359
BstDEI CTNAG 5 cut(s) 50, 95, 555, 624, 843
BstF5I GGATG 3 cut(s) 178, 198, 371
BstFNI CGCG 1 cut(s) 875
BstKTI GATC 5 cut(s) 13, 103, 657, 701, 807
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 5 cut(s) 10, 100, 654, 698, 804
BstMCI CGRYCG 1 cut(s) 879
BstMWI GCNNNNNNNGC 2 cut(s) 568, 583
BstNI CCWGG 3 cut(s) 105, 339, 353
BstSCI CCNGG 3 cut(s) 103, 337, 351
BstSFI CTRYAG 1 cut(s) 808
BstUI CGCG 1 cut(s) 875
BstV1I GCAGC 1 cut(s) 822
BstX2I RGATCY 3 cut(s) 10, 100, 654
BstYI RGATCY 3 cut(s) 10, 100, 654
BstZI CGGCCG 1 cut(s) 876
Bsu36I CCTNAGG 1 cut(s) 843
BsuRI GGCC 2 cut(s) 236, 878
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 3 cut(s) 178, 198, 371
BtsIMutI CAGTG 2 cut(s) 433, 493
BveI ACCTGC 1 cut(s) 466
Cfr13I GGNCC 3 cut(s) 107, 341, 526
CseI GACGC 1 cut(s) 481
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 2 cut(s) 254, 385
CviAII CATG 2 cut(s) 204, 416
CviQI GTAC 2 cut(s) 254, 385
DdeI CTNAG 5 cut(s) 50, 95, 555, 624, 843
DpnI GATC 5 cut(s) 12, 102, 656, 700, 806
DpnII GATC 5 cut(s) 10, 100, 654, 698, 804
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 876
EagI CGGCCG 1 cut(s) 876
Eam1104I CTCTTC 2 cut(s) 206, 789
EarI CTCTTC 2 cut(s) 206, 789
EciI GGCGGA 1 cut(s) 412
EclXI CGGCCG 1 cut(s) 876
Eco130I CCWWGG 1 cut(s) 463
Eco47I GGWCC 3 cut(s) 107, 341, 526
Eco52I CGGCCG 1 cut(s) 876
Eco81I CCTNAGG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 673
EcoRII CCWGG 3 cut(s) 103, 337, 351
EcoT14I CCWWGG 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 2 cut(s) 207, 419
FaqI GGGAC 2 cut(s) 484, 539
FatI CATG 2 cut(s) 203, 415
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 3 cut(s) 584, 811, 876
FokI GGATG 3 cut(s) 185, 185, 358
Fsp4HI GCNGC 3 cut(s) 584, 811, 876
FspBI CTAG 3 cut(s) 38, 260, 896
GluI GCNGC 3 cut(s) 584, 811, 876
HaeIII GGCC 2 cut(s) 236, 878
HgaI GACGC 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 2 cut(s) 207, 419
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 2 cut(s) 321, 616
HphI GGTGA 3 cut(s) 20, 70, 187
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 3 cut(s) 98, 621, 853
Hpy188III TCNNGA 4 cut(s) 8, 304, 363, 675
Hpy8I GTNNAC 1 cut(s) 315
Hpy99I CGWCG 1 cut(s) 361
HpyCH4III ACNGT 4 cut(s) 131, 248, 707, 819
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 4 cut(s) 243, 664, 810, 838
HpyF10VI GCNNNNNNNGC 2 cut(s) 568, 583
HpyF3I CTNAG 5 cut(s) 50, 95, 555, 624, 843
HpySE526I ACGT 1 cut(s) 359
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 2 cut(s) 207, 419
Kzo9I GATC 5 cut(s) 10, 100, 654, 698, 804
LmnI GCTCC 3 cut(s) 485, 559, 677
Lsp1109I GCAGC 1 cut(s) 822
LweI GCATC 1 cut(s) 673
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 3 cut(s) 38, 260, 896
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 3 cut(s) 125, 428, 904
MalI GATC 5 cut(s) 12, 102, 656, 700, 806
MbiI CCGCTC 1 cut(s) 562
MboI GATC 5 cut(s) 10, 100, 654, 698, 804
MboII GAAGA 4 cut(s) 223, 316, 617, 806
MflI RGATCY 3 cut(s) 10, 100, 654
MluCI AATT 5 cut(s) 111, 190, 274, 489, 520
MmeI TCCRAC 2 cut(s) 58, 644
MseI TTAA 1 cut(s) 752
MspA1I CMGCKG 1 cut(s) 49
MspR9I CCNGG 3 cut(s) 105, 339, 353
Mva1269I GAATGC 1 cut(s) 788
MvaI CCWGG 3 cut(s) 105, 339, 353
MvnI CGCG 1 cut(s) 875
MwoI GCNNNNNNNGC 2 cut(s) 568, 583
NdeII GATC 5 cut(s) 10, 100, 654, 698, 804
NlaIII CATG 2 cut(s) 207, 419
NlaIV GGNNCC 3 cut(s) 308, 527, 656
NmuCI GTSAC 1 cut(s) 428
PctI GAATGC 1 cut(s) 788
PfeI GAWTC 2 cut(s) 321, 616
PkrI GCNGC 3 cut(s) 585, 812, 877
Psp6I CCWGG 3 cut(s) 103, 337, 351
PspGI CCWGG 3 cut(s) 103, 337, 351
PspN4I GGNNCC 3 cut(s) 308, 527, 656
PspPI GGNCC 3 cut(s) 107, 341, 526
PstI CTGCAG 1 cut(s) 812
PsuI RGATCY 3 cut(s) 10, 100, 654
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 2 cut(s) 255, 386
RsaNI GTAC 2 cut(s) 254, 385
SalI GTCGAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 752
SatI GCNGC 3 cut(s) 584, 811, 876
Sau3AI GATC 5 cut(s) 10, 100, 654, 698, 804
Sau96I GGNCC 3 cut(s) 107, 341, 526
ScrFI CCNGG 3 cut(s) 105, 339, 353
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 1 cut(s) 808
SinI GGWCC 3 cut(s) 107, 341, 526
Sse9I AATT 5 cut(s) 111, 190, 274, 489, 520
SsiI CCGC 5 cut(s) 328, 423, 562, 584, 875
SspMI CTAG 3 cut(s) 38, 260, 896
StyD4I CCNGG 3 cut(s) 103, 337, 351
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 4 cut(s) 131, 248, 707, 819
TaiI ACGT 1 cut(s) 362
TaqI TCGA 2 cut(s) 154, 314
TasI AATT 5 cut(s) 111, 190, 274, 489, 520
TauI GCSGC 2 cut(s) 586, 878
TfiI GAWTC 2 cut(s) 321, 616
Tru1I TTAA 1 cut(s) 752
Tru9I TTAA 1 cut(s) 752
TscAI CASTG 2 cut(s) 433, 500
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 1 cut(s) 810
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 7 cut(s) 439, 618, 633, 675, 715, 807, 903
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 433, 500
VpaK11BI GGWCC 3 cut(s) 107, 341, 526
XapI RAATTY 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 3 cut(s) 38, 260, 896
ZraI GACGTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.