Rh5CG546100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000139
Physical Location & Seq
Reverse (-)
76123169 .. 76123465
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG546100.1

Sequence Viewer

Length: 297 bp
ATGACAGAGTATGGGGTGCCTGAATCTTGGGTTAAACTCTTTAATTTTAGAGTACCAGATTTACCAGATGTCTTTGCTTCATTATACAGTACATGGGATCTGTGTTTCATTACAGAAAGCGGTACAATGGTGATAAGCCTGCAAAAGGAGTTGTTTTGGATTGAATGCCATAATGAAGAAAAGCCGATCTGCAGCGGACGGTATAGGCTTGAGGAGGTTCACCCTGAGGTGCCGGGGTGTGTATTGTATTTTCATGCGACTGCTTATGATGAAACTTTACTTTCTGTAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

98

Amino Acids

11.37

Weight (kDa)

4.53

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 16, 229
AciI CCGC 2 cut(s) 120, 195
AclWI GGATC 1 cut(s) 105
AfaI GTAC 3 cut(s) 54, 91, 124
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 142, 212
AxyI CCTNAGG 1 cut(s) 225
BaeI ACNNNNGTAYC 2 cut(s) 114, 147
BanI GGYRCC 2 cut(s) 16, 229
BbvI GCAGC 1 cut(s) 204
BcnI CCSGG 1 cut(s) 234
BfmI CTRYAG 2 cut(s) 190, 285
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 18, 231
BmrFI CCNGG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse21I CCTNAGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 204
BshNI GGYRCC 2 cut(s) 16, 229
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 145
BsmI GAATGC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 97, 186
BspACI CCGC 2 cut(s) 120, 195
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 18, 231
BspMAI CTGCAG 1 cut(s) 194
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 2 cut(s) 16, 229
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 2 cut(s) 97, 186
Bst4CI ACNGT 2 cut(s) 89, 201
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 143
BstKTI GATC 2 cut(s) 100, 189
BstMBI GATC 2 cut(s) 97, 186
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 2 cut(s) 190, 285
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 140
Csp6I GTAC 3 cut(s) 53, 90, 123
CviAII CATG 2 cut(s) 93, 254
CviJI RGCY 4 cut(s) 138, 184, 208, 290
CviKI_1 RGCY 4 cut(s) 138, 184, 208, 290
CviQI GTAC 3 cut(s) 53, 90, 123
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 99, 188
DpnII GATC 2 cut(s) 97, 186
Eco81I CCTNAGG 1 cut(s) 225
EcoNI CCTNNNNNAGG 1 cut(s) 143
FaeI CATG 2 cut(s) 96, 257
FaiI YATR 7 cut(s) 12, 85, 94, 171, 204, 255, 267
FatI CATG 2 cut(s) 92, 253
Fnu4HI GCNGC 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 193
HapII CCGG 1 cut(s) 233
Hin1II CATG 2 cut(s) 96, 257
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 142, 212
Hpy166II GTNNAC 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4III ACNGT 2 cut(s) 89, 201
HpyCH4V TGCA 2 cut(s) 142, 192
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 2 cut(s) 96, 257
Kzo9I GATC 2 cut(s) 97, 186
LpnPI CCDG 6 cut(s) 33, 69, 78, 152, 237, 246
Lsp1109I GCAGC 1 cut(s) 204
MalI GATC 2 cut(s) 99, 188
MboI GATC 2 cut(s) 97, 186
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 97
MluCI AATT 1 cut(s) 43
MnlI CCTC 3 cut(s) 205, 208, 220
MseI TTAA 2 cut(s) 33, 42
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 97, 186
NlaIII CATG 2 cut(s) 96, 257
NlaIV GGNNCC 2 cut(s) 18, 231
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 18, 231
PstI CTGCAG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 3 cut(s) 54, 91, 124
RsaNI GTAC 3 cut(s) 53, 90, 123
SaqAI TTAA 2 cut(s) 33, 42
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 2 cut(s) 97, 186
ScrFI CCNGG 1 cut(s) 234
SetI ASST 3 cut(s) 219, 231, 292
SfcI CTRYAG 2 cut(s) 190, 285
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 43
SsiI CCGC 2 cut(s) 120, 195
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 89, 201
TasI AATT 1 cut(s) 43
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 33, 42
Tru9I TTAA 2 cut(s) 33, 42
TseI GCWGC 1 cut(s) 192
TspDTI ATGAA 5 cut(s) 69, 97, 189, 242, 285
XagI CCTNNNNNAGG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.