RchiOBHm_Chr5g0075691

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000139
Physical Location & Seq
Forward (+)
81472053 .. 81486012
13960 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35040

Sequence Viewer

Length: 1131 bp
ATGTTGCACTGCGTCGATCTCCCCGAAGATGTTCTAGTGAAGATTCTGTGCCGGTTGCCGGTCAAATATTTGATCCGCTTCACCTGTGTGTCGAAACGGTGGCGTTCTGTTATCACTTCTGACCCTCAGTTTGCCAAATCCCACCTCCAGCTAGCATTACAGCAGGGAACCCTCCGTCATAGAGTCCTCACCTCTGCCTATTATTTCTACTTTGAGTTAGCCACACCCTACCATGATGTACCCACTCGATTTCACTCATTTGAAGATAATTCTTCAGTCAGAACTCTAACGTACCCAACAGAGGAGAATAATTATCCTCATATACTTGTTTCCTGCAATGGTTTGGTTCTTCTAGCTGAACCCACTACCAGTCAATTTAACTTGTATATCTGGAACCCAACAACCAGATTTTCCCGCAAAATACCTCATCTACCAGAAAGCGACCTATTCTCTATAAGTCTTGGTCATGTTTCAGCCACAGATGACTACAAAGTTGTCCTAATACCGCTTTCTGGTAGTTCTGGTCATGTTTACTCACTCAGAGAAAAGATTTGGAAAGTTGTTGAAGTTCCTCCTTCACACAGCTGGCAATGGTTCCCTGTGGGGACTTATTCAAATGGAGCAATTCATTGGGTCAACTACTGCACGCCAGAGAATTCTGAGAGAGTTATCTATGCTTTTGATTTGGCGAATGAGGAGTTCGGAAAAGTAGCATTGCCTGATTCATTCCAAAATGGATATGACATGAATGGGAGAACGATAAGAACTCAGGTTCATTTAGGAGGATGCCTTTGTGTATCTTCTGATGCCGATCATGGGCTTATTGAATTCTGGGTCATGACAGAGTATGGTGTGCCTGAATCTTGGGTTAAACTCTTTCAGTTTGAGGTAAGGGATTTACGAAAAGTCTCTGCACACTCATACTATGGTTGTAGTCCTATTTTTGTGACAGAAGGCGGCACAGTTTTGATGAAATTTTCTGACAAGATGGAGTTTTTTAAGATCGAACGCTCCAAGGAAGGGAAGCTGGTCTGCAGCCGTCGATATAGGCTTGAGGAGGAGGTGCATGGGTGCAAGTATATATCTCATGCGACTGTATATGATGAAACTCTAGTTTCGATACCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

376

Amino Acids

43.3

Weight (kDa)

6.35

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 42 4.8e-12 F-box domain
F-box-like PF12937 6 - 41 6.6e-08 F-box-like
FBA_3 PF08268 88 - 324 8.3e-18 F-box associated beta propeller domain
FBA_1 PF07734 103 - 374 5.9e-20 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 107 - 245 2.1e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 76, 415, 506, 957
AclWI GGATC 1 cut(s) 67
AcsI RAATTY 3 cut(s) 655, 827, 974
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 2 cut(s) 240, 293
AfiI CCNNNNNNNGG 5 cut(s) 58, 301, 512, 816, 1020
AgsI TTSAA 4 cut(s) 263, 566, 615, 827
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 4 cut(s) 151, 356, 585, 1027
AluI AGCT 4 cut(s) 151, 356, 585, 1027
Alw26I GTCTC 1 cut(s) 913
AlwI GGATC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 1035
ApoI RAATTY 3 cut(s) 655, 827, 974
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp700I GAANNNNTTC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 73, 181
AsuNHI GCTAGC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 1047
BccI CCATC 1 cut(s) 982
BceAI ACGGC 1 cut(s) 1023
BcoDI GTCTC 1 cut(s) 913
BfaI CTAG 4 cut(s) 35, 152, 353, 1112
BfmI CTRYAG 1 cut(s) 1033
BisI GCNGC 2 cut(s) 958, 1036
BlsI GCNGC 2 cut(s) 959, 1037
BmiI GGNNCC 3 cut(s) 169, 395, 596
BmsI GCATC 2 cut(s) 776, 796
BmtI GCTAGC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 1073
BsaBI GATNNNNATC 1 cut(s) 810
BsaJI CCNNGG 1 cut(s) 1014
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 301, 512, 816, 1020
Bse118I RCCGGY 2 cut(s) 51, 58
Bse1I ACTGG 1 cut(s) 369
Bse3DI GCAATG 3 cut(s) 343, 596, 713
Bse8I GATNNNNATC 1 cut(s) 810
BseDI CCNNGG 1 cut(s) 1014
BseGI GGATG 1 cut(s) 791
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 5 cut(s) 58, 301, 512, 816, 1020
BseMI GCAATG 3 cut(s) 343, 596, 713
BseMII CTCAG 4 cut(s) 140, 553, 651, 782
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 4 cut(s) 317, 710, 1070, 1073
BseXI GCAGC 1 cut(s) 1047
BsgI GTGCAG 2 cut(s) 628, 897
BsiSI CCGG 2 cut(s) 52, 59
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 5 cut(s) 58, 301, 512, 816, 1020
BsmAI GTCTC 1 cut(s) 913
BsmFI GGGAC 1 cut(s) 619
Bsp143I GATC 4 cut(s) 16, 72, 811, 1002
BspACI CCGC 4 cut(s) 76, 415, 506, 957
BspCNI CTCAG 4 cut(s) 139, 552, 652, 781
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 3 cut(s) 169, 395, 596
BspMAI CTGCAG 1 cut(s) 1037
BspOI GCTAGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 67
BsrDI GCAATG 3 cut(s) 343, 596, 713
BsrFI RCCGGY 2 cut(s) 51, 58
BsrI ACTGG 1 cut(s) 369
BssAI RCCGGY 2 cut(s) 51, 58
BssECI CCNNGG 1 cut(s) 1014
BssMI GATC 4 cut(s) 16, 72, 811, 1002
BssT1I CCWWGG 1 cut(s) 1014
Bst4CI ACNGT 3 cut(s) 99, 964, 1096
BstC8I GCNNGC 3 cut(s) 153, 587, 647
BstDEI CTNAG 4 cut(s) 126, 539, 660, 768
BstF5I GGATG 1 cut(s) 791
BstKTI GATC 4 cut(s) 19, 75, 814, 1005
BstMAI GTCTC 1 cut(s) 913
BstMBI GATC 4 cut(s) 16, 72, 811, 1002
BstSFI CTRYAG 1 cut(s) 1033
BstV1I GCAGC 1 cut(s) 1047
BtsCI GGATG 1 cut(s) 791
BtsI GCAGTG 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 7
Cac8I GCNNGC 3 cut(s) 153, 587, 647
CciI TCATGA 1 cut(s) 837
Cfr10I RCCGGY 2 cut(s) 51, 58
Csp6I GTAC 2 cut(s) 239, 292
CviAII CATG 8 cut(s) 233, 467, 527, 745, 815, 838, 1067, 1088
CviJI RGCY 9 cut(s) 151, 221, 356, 476, 585, 820, 1027, 1038, 1051
CviKI_1 RGCY 9 cut(s) 151, 221, 356, 476, 585, 820, 1027, 1038, 1051
CviQI GTAC 2 cut(s) 239, 292
DdeI CTNAG 4 cut(s) 126, 539, 660, 768
DpnI GATC 4 cut(s) 18, 74, 813, 1004
DpnII GATC 4 cut(s) 16, 72, 811, 1002
Eco130I CCWWGG 1 cut(s) 1014
Eco57I CTGAAG 1 cut(s) 258
EcoRI GAATTC 2 cut(s) 655, 827
EcoT14I CCWWGG 1 cut(s) 1014
ErhI CCWWGG 1 cut(s) 1014
FaeI CATG 8 cut(s) 236, 470, 530, 748, 818, 841, 1070, 1091
FaqI GGGAC 1 cut(s) 619
FatI CATG 8 cut(s) 232, 466, 526, 744, 814, 837, 1066, 1087
FauI CCCGC 1 cut(s) 422
Fnu4HI GCNGC 2 cut(s) 958, 1036
FokI GGATG 1 cut(s) 798
Fsp4HI GCNGC 2 cut(s) 958, 1036
FspBI CTAG 4 cut(s) 35, 152, 353, 1112
GluI GCNGC 2 cut(s) 958, 1036
GsuI CTGGAG 1 cut(s) 131
HapII CCGG 2 cut(s) 52, 59
Hin1II CATG 8 cut(s) 236, 470, 530, 748, 818, 841, 1070, 1091
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 4 cut(s) 43, 183, 722, 860
HpaII CCGG 2 cut(s) 52, 59
HphI GGTGA 2 cut(s) 73, 181
Hpy166II GTNNAC 2 cut(s) 532, 637
Hpy188I TCNGA 7 cut(s) 121, 281, 542, 661, 704, 805, 982
Hpy188III TCNNGA 2 cut(s) 391, 838
Hpy8I GTNNAC 2 cut(s) 532, 637
Hpy99I CGWCG 2 cut(s) 17, 1044
HpyAV CCTTC 3 cut(s) 585, 947, 1013
HpyCH4III ACNGT 3 cut(s) 99, 964, 1096
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 7 cut(s) 7, 336, 645, 914, 1035, 1066, 1074
HpyF3I CTNAG 4 cut(s) 126, 539, 660, 768
HpySE526I ACGT 1 cut(s) 290
Hsp92II CATG 8 cut(s) 236, 470, 530, 748, 818, 841, 1070, 1091
Kzo9I GATC 4 cut(s) 16, 72, 811, 1002
LmnI GCTCC 2 cut(s) 620, 1016
Lsp1109I GCAGC 1 cut(s) 1047
LweI GCATC 2 cut(s) 776, 796
MaeI CTAG 4 cut(s) 35, 152, 353, 1112
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 946
MalI GATC 4 cut(s) 18, 74, 813, 1004
MboI GATC 4 cut(s) 16, 72, 811, 1002
MboII GAAGA 6 cut(s) 38, 52, 264, 275, 341, 792
MluCI AATT 7 cut(s) 268, 310, 374, 624, 655, 827, 974
MlyI GAGTC 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 378, 870, 999
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 585
MspI CCGG 2 cut(s) 52, 59
NdeII GATC 4 cut(s) 16, 72, 811, 1002
NheI GCTAGC 1 cut(s) 151
NlaIII CATG 8 cut(s) 236, 470, 530, 748, 818, 841, 1070, 1091
NlaIV GGNNCC 3 cut(s) 169, 395, 596
NmuCI GTSAC 1 cut(s) 946
OliI CACNNNNGTG 1 cut(s) 86
PagI TCATGA 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 43, 722, 860
PkrI GCNGC 2 cut(s) 959, 1037
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 169, 395, 596
PstI CTGCAG 1 cut(s) 1037
PvuII CAGCTG 1 cut(s) 585
RsaI GTAC 2 cut(s) 240, 293
RsaNI GTAC 2 cut(s) 239, 292
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 3 cut(s) 378, 870, 999
SatI GCNGC 2 cut(s) 958, 1036
Sau3AI GATC 4 cut(s) 16, 72, 811, 1002
SchI GAGTC 1 cut(s) 192
SfaNI GCATC 2 cut(s) 776, 796
SfcI CTRYAG 1 cut(s) 1033
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
Sse9I AATT 7 cut(s) 268, 310, 374, 624, 655, 827, 974
SsiI CCGC 4 cut(s) 76, 415, 506, 957
SspI AATATT 1 cut(s) 68
SspMI CTAG 4 cut(s) 35, 152, 353, 1112
StyI CCWWGG 1 cut(s) 1014
TaaI ACNGT 3 cut(s) 99, 964, 1096
TaiI ACGT 1 cut(s) 293
TaqI TCGA 6 cut(s) 15, 92, 247, 1005, 1042, 1118
TasI AATT 7 cut(s) 268, 310, 374, 624, 655, 827, 974
TauI GCSGC 1 cut(s) 960
TfiI GAWTC 3 cut(s) 43, 722, 860
Tru1I TTAA 3 cut(s) 378, 870, 999
Tru9I TTAA 3 cut(s) 378, 870, 999
TscAI CASTG 1 cut(s) 14
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 1 cut(s) 1035
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 6 cut(s) 617, 714, 761, 764, 986, 1119
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 14
XapI RAATTY 3 cut(s) 655, 827, 974
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 4 cut(s) 35, 152, 353, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.