RLG00000036604

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000139
Physical Location & Seq
Reverse (-)
82414083 .. 82419712
5630 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036604

Sequence Viewer

Length: 846 bp
ATGGATTTTGCTTCTGACAAACAACTTCCCAGGATTAGATATCATGAGATGCCACAGTTGCTTCTTTCAATACAGGGGACTCTTTCAAATGGAGCACTTCACTGGATCAGCTACCACAAGGATGAAATTCCGAGCTCTATCTATGCTTTTGATTTGGCTGAGGAGGAATTACGGCAAGTGCCACTGCCTATTTTTACCCAAAATGAAGATGGGCAAGCCCTAGTCATTGACTTTGGAACAAACCCTAACTCCGTTAGCATCCGCCGCACCAAAGCTCTAGCTCCGACGTACAGACCGACTAGTGACTGTGGAACTCTTTCAAATGAAGCGATCCATTGGGTTAACCGATACTATGACTATGACTATCTAGAAGACTCCATTGAAGCAATATTTGATGTCTGTGCTTTTGATTTGGAAAATGAGGAGTTCCGTAAAGTGCCTGTTCCTTGTTTTAACCAAGATGATGATCGAGTTTTCGATAGAAGAATGCGGACTGTTGTTCATTCAGGAGGATGCCTTTGCGTTTTGGTTCAGACTATGCATAACAGAGGTGGGGACCGTGGGGATATTGAATTGTGGATGATGAGAGATTACGGGGTTTCCAATTCATGGGTGAAACTCTACAAATTAAGCAAGTATGATTTACCGGTTCCGCAGACAAAATCTTATGACATCTGGGGCGGGGAGGTTGGAAACACCCTCTGGGCTGCAAGCTCCAAGCCCGGAAAAGCCCCTAAGCCCTTCTCTACGATATATAGGCTTCTCCAAAGTCCAAACCCTCAAATAGTCAAAACAGTCGCCTTCACTCAAAAGCTGGGAGTGATGGCCAGCTTCACCAACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

282

Amino Acids

32.12

Weight (kDa)

5.72

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 609
AciI CCGC 5 cut(s) 262, 265, 490, 653, 681
AclWI GGATC 2 cut(s) 113, 325
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 609
AgeI ACCGGT 1 cut(s) 646
AgsI TTSAA 5 cut(s) 69, 87, 321, 383, 572
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 7 cut(s) 111, 135, 275, 281, 714, 814, 831
AluI AGCT 7 cut(s) 111, 135, 275, 281, 714, 814, 831
Alw21I GWGCWC 2 cut(s) 97, 137
AlwI GGATC 2 cut(s) 113, 325
AoxI GGCC 1 cut(s) 825
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 1 cut(s) 126
AsiGI ACCGGT 1 cut(s) 646
Asp700I GAANNNNTTC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 556
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 2 cut(s) 625, 826
AvaII GGWCC 1 cut(s) 556
BalI TGGCCA 1 cut(s) 827
BanII GRGCYC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 2 cut(s) 97, 137
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 694
BccI CCATC 2 cut(s) 203, 817
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 31
BcnI CCSGG 1 cut(s) 723
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 4 cut(s) 221, 278, 300, 368
BisI GCNGC 2 cut(s) 265, 708
BlsI GCNGC 2 cut(s) 266, 709
Bme1390I CCNGG 2 cut(s) 31, 723
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 557, 651
BmrFI CCNGG 2 cut(s) 31, 723
BmsI GCATC 3 cut(s) 39, 267, 503
BpiI GAAGAC 1 cut(s) 378
Bpu10I CCTNAGC 2 cut(s) 159, 735
BpuMI CCSGG 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 29, 559
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 609
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 29, 559
BseGI GGATG 4 cut(s) 127, 258, 518, 585
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 609
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 2 cut(s) 176, 437
BseXI GCAGC 1 cut(s) 694
BseYI CCCAGC 1 cut(s) 814
BshFI GGCC 1 cut(s) 827
BshTI ACCGGT 1 cut(s) 646
BsiHKAI GWGCWC 2 cut(s) 97, 137
BsiSI CCGG 2 cut(s) 647, 723
BslFI GGGAC 2 cut(s) 91, 569
BslI CCNNNNNNNGG 1 cut(s) 609
BsmFI GGGAC 2 cut(s) 91, 569
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 1 cut(s) 827
Bsp1286I GDGCHC 2 cut(s) 97, 137
Bsp143I GATC 3 cut(s) 105, 330, 466
BspACI CCGC 5 cut(s) 262, 265, 490, 653, 681
BspANI GGCC 1 cut(s) 827
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 557, 651
BspPI GGATC 2 cut(s) 113, 325
BsrFI RCCGGY 1 cut(s) 646
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 646
BssECI CCNNGG 2 cut(s) 29, 559
BssMI GATC 3 cut(s) 105, 330, 466
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 5 cut(s) 57, 308, 496, 560, 796
BstC8I GCNNGC 3 cut(s) 216, 712, 829
BstDEI CTNAG 2 cut(s) 159, 735
BstDSI CCRYGG 1 cut(s) 559
BstF5I GGATG 4 cut(s) 127, 258, 518, 585
BstKTI GATC 3 cut(s) 108, 333, 469
BstMBI GATC 3 cut(s) 105, 330, 466
BstMWI GCNNNNNNNGC 2 cut(s) 58, 264
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 29, 721
BstV1I GCAGC 1 cut(s) 694
BstV2I GAAGAC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 827
BtgI CCRYGG 1 cut(s) 559
BtsCI GGATG 4 cut(s) 127, 258, 518, 585
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 100, 182
Cac8I GCNNGC 3 cut(s) 216, 712, 829
CciI TCATGA 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 556
Csp6I GTAC 1 cut(s) 289
CspAI ACCGGT 1 cut(s) 646
CviAII CATG 2 cut(s) 44, 609
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 159, 735
DpnI GATC 3 cut(s) 107, 332, 468
DpnII GATC 3 cut(s) 105, 330, 466
EaeI YGGCCR 1 cut(s) 825
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 29
EcoRV GATATC 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 543
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 2 cut(s) 47, 612
FaqI GGGAC 2 cut(s) 91, 569
FatI CATG 2 cut(s) 43, 608
FauI CCCGC 1 cut(s) 674
Fnu4HI GCNGC 2 cut(s) 265, 708
FokI GGATG 4 cut(s) 134, 245, 525, 592
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 265, 708
FspBI CTAG 4 cut(s) 221, 278, 300, 368
GluI GCNGC 2 cut(s) 265, 708
GsaI CCCAGC 1 cut(s) 818
HaeIII GGCC 1 cut(s) 827
HapII CCGG 2 cut(s) 647, 723
Hin1II CATG 2 cut(s) 47, 612
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 2 cut(s) 79, 374
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 2 cut(s) 647, 723
HphI GGTGA 2 cut(s) 625, 826
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 4 cut(s) 16, 132, 285, 534
Hpy188III TCNNGA 3 cut(s) 44, 368, 507
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 751, 811
HpyCH4III ACNGT 5 cut(s) 57, 308, 496, 560, 796
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 2 cut(s) 541, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 264
HpyF3I CTNAG 2 cut(s) 159, 735
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 2 cut(s) 47, 612
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 105, 330, 466
LmnI GCTCC 3 cut(s) 92, 286, 719
Lsp1109I GCAGC 1 cut(s) 694
LweI GCATC 3 cut(s) 39, 267, 503
MaeI CTAG 4 cut(s) 221, 278, 300, 368
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 302
MalI GATC 3 cut(s) 107, 332, 468
MboI GATC 3 cut(s) 105, 330, 466
MboII GAAGA 3 cut(s) 218, 383, 495
MhlI GDGCHC 2 cut(s) 97, 137
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 5 cut(s) 126, 167, 572, 604, 626
MluNI TGGCCA 1 cut(s) 827
MlyI GAGTC 2 cut(s) 73, 368
MmeI TCCRAC 2 cut(s) 308, 670
MnlI CCTC 8 cut(s) 154, 157, 415, 503, 542, 679, 710, 789
Mox20I TGGCCA 1 cut(s) 827
Mph1103I ATGCAT 1 cut(s) 543
MroXI GAANNNNTTC 1 cut(s) 316
MscI TGGCCA 1 cut(s) 827
MseI TTAA 3 cut(s) 342, 453, 629
MslI CAYNNNNRTG 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 827
MspI CCGG 2 cut(s) 647, 723
MspR9I CCNGG 2 cut(s) 31, 723
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 58, 264
NciI CCSGG 1 cut(s) 723
NdeII GATC 3 cut(s) 105, 330, 466
NlaIII CATG 2 cut(s) 47, 612
NlaIV GGNNCC 2 cut(s) 557, 651
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 543
PagI TCATGA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PctI GAATGC 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 609
PinAI ACCGGT 1 cut(s) 646
PkrI GCNGC 2 cut(s) 266, 709
PleI GAGTC 2 cut(s) 73, 368
PpsI GAGTC 2 cut(s) 73, 368
Psp124BI GAGCTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 557, 651
PspPI GGNCC 1 cut(s) 556
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 137
SaqAI TTAA 3 cut(s) 342, 453, 629
SatI GCNGC 2 cut(s) 265, 708
Sau3AI GATC 3 cut(s) 105, 330, 466
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 2 cut(s) 73, 368
ScrFI CCNGG 2 cut(s) 31, 723
SduI GDGCHC 2 cut(s) 97, 137
SfaNI GCATC 3 cut(s) 39, 267, 503
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 120
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 5 cut(s) 126, 167, 572, 604, 626
SsiI CCGC 5 cut(s) 262, 265, 490, 653, 681
SspI AATATT 1 cut(s) 390
SspMI CTAG 4 cut(s) 221, 278, 300, 368
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 29, 721
TaaI ACNGT 5 cut(s) 57, 308, 496, 560, 796
TaiI ACGT 1 cut(s) 290
TaqI TCGA 2 cut(s) 469, 477
TaqII GACCGA 1 cut(s) 310
TasI AATT 5 cut(s) 126, 167, 572, 604, 626
TauI GCSGC 1 cut(s) 267
Tru1I TTAA 3 cut(s) 342, 453, 629
Tru9I TTAA 3 cut(s) 342, 453, 629
TscAI CASTG 2 cut(s) 107, 189
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 707
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 5 cut(s) 138, 219, 339, 491, 597
TspGWI ACGGA 2 cut(s) 241, 419
TspRI CASTG 2 cut(s) 107, 189
Van91I CCANNNNNTGG 1 cut(s) 609
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 1 cut(s) 126
XbaI TCTAGA 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 4 cut(s) 221, 278, 300, 368
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.