Rmu_co8266415.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8266415.1
OG0000139
Physical Location & Seq
Forward (+)
1 .. 810
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8266415.1_g000001.1.cds

Sequence Viewer

Length: 704 bp
gtggttatttgagaaacttgtctatctggaacccgtctactggatgcttccgcaacctgcctaggccaagtttcccggagaggtcagtacaatcagccggtaatgagtacaagttctctgtgaattatggttttggtcatgtgtccgccagtgacgactacaaacttgttttcataatacctgccctcggtgatctgccggaagtccatgtcttctctatgagagccaacatttggaaagttattacagctccttactcgtcatggccgggatggcgtggtggacaggggacactttcaaatgaagcaattcactgggtcattcgccgcaaaaatgagagttcggacccagttatctatgcgtttgatttggctgaggagggatttcggcaagtgccattgccgcttgttttgtggcaagatgaagatgacaagacttccaccgagataacaactctggttcatttaggaggatccctttgcatcttgtctcgaaagcattattttcccgtgaaaggtgaagtttgggcgatgacagagtatggggtgcctgaatcttgggttaaactctttcaatttgatgtacgcgatctcccagatgtcttttctagagtatacgtggacggtatgggattgaggaggtacaacctgaggtgcccgagtgttcgttttattttcacgcaatcgaatatgatgaaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

233

Amino Acids

26.74

Weight (kDa)

7.88

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 65, 189
AccB1I GGYRCC 2 cut(s) 546, 653
AccB7I CCANNNNNTGG 1 cut(s) 233
AccI GTMKAC 2 cut(s) 37, 614
AccII CGCG 1 cut(s) 587
AciI CCGC 4 cut(s) 51, 146, 327, 403
AclWI GGATC 2 cut(s) 467, 480
AcoI YGGCCR 1 cut(s) 265
AfaI GTAC 4 cut(s) 89, 109, 584, 643
AfiI CCNNNNNNNGG 4 cut(s) 40, 187, 233, 514
AgsI TTSAA 2 cut(s) 299, 574
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 2 cut(s) 467, 480
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 2 cut(s) 64, 265
Asp700I GAANNNNTTC 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 345
AsuC2I CCSGG 2 cut(s) 76, 269
AsuHPI GGTGA 2 cut(s) 202, 529
AvaI CYCGRG 1 cut(s) 657
AvaII GGWCC 1 cut(s) 345
AvrII CCTAGG 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 649
BaeGI GKGCMC 1 cut(s) 658
BamHI GGATCC 1 cut(s) 472
BanI GGYRCC 2 cut(s) 546, 653
BbsI GAAGAC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 266
BcnI CCSGG 2 cut(s) 76, 269
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 3 cut(s) 62, 608, 702
BfuAI ACCTGC 2 cut(s) 65, 189
BglI GCCNNNNNGGC 1 cut(s) 273
BisI GCNGC 2 cut(s) 327, 403
BlnI CCTAGG 1 cut(s) 61
BlsI GCNGC 2 cut(s) 328, 404
Bme1390I CCNGG 2 cut(s) 76, 269
Bme18I GGWCC 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 657
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 5 cut(s) 31, 347, 474, 548, 655
BmrFI CCNGG 2 cut(s) 76, 269
BmrI ACTGGG 2 cut(s) 324, 343
BmsI GCATC 2 cut(s) 34, 491
BmuI ACTGGG 2 cut(s) 324, 343
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 374
BpuMI CCSGG 2 cut(s) 76, 269
BsaAI YACGTR 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 61, 186
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 187, 233, 514
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 4 cut(s) 45, 149, 319, 349
Bse21I CCTNAGG 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 397
BseDI CCNNGG 2 cut(s) 61, 186
BseGI GGATG 2 cut(s) 49, 277
BseLI CCNNNNNNNGG 4 cut(s) 40, 187, 233, 514
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 2 cut(s) 365, 640
BseNI ACTGG 4 cut(s) 45, 149, 319, 349
BseRI GAGGAG 2 cut(s) 391, 651
BseSI GKGCMC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 587
BshFI GGCC 2 cut(s) 66, 267
BshNI GGYRCC 2 cut(s) 546, 653
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 4 cut(s) 76, 98, 199, 268
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 4 cut(s) 40, 187, 233, 514
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 2 cut(s) 66, 267
BsoBI CYCGRG 1 cut(s) 657
Bsp1286I GDGCHC 1 cut(s) 658
Bsp143I GATC 3 cut(s) 192, 472, 588
BspACI CCGC 4 cut(s) 51, 146, 327, 403
BspANI GGCC 2 cut(s) 66, 267
BspCNI CTCAG 2 cut(s) 366, 641
BspFNI CGCG 1 cut(s) 587
BspLI GGNNCC 5 cut(s) 31, 347, 474, 548, 655
BspMI ACCTGC 2 cut(s) 65, 189
BspPI GGATC 2 cut(s) 467, 480
BspT107I GGYRCC 2 cut(s) 546, 653
BsrDI GCAATG 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 4 cut(s) 45, 149, 319, 349
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 61, 186
BssMI GATC 3 cut(s) 192, 472, 588
BssNAI GTATAC 1 cut(s) 615
BssT1I CCWWGG 1 cut(s) 61
Bst1107I GTATAC 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 625
BstBAI YACGTR 1 cut(s) 618
BstDEI CTNAG 2 cut(s) 374, 649
BstF5I GGATG 2 cut(s) 49, 277
BstFNI CGCG 1 cut(s) 587
BstKTI GATC 3 cut(s) 195, 475, 591
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 3 cut(s) 192, 472, 588
BstMWI GCNNNNNNNGC 2 cut(s) 273, 402
BstSCI CCNGG 2 cut(s) 74, 267
BstSLI GKGCMC 1 cut(s) 658
BstUI CGCG 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BstZ17I GTATAC 1 cut(s) 615
Bsu36I CCTNAGG 1 cut(s) 649
BsuRI GGCC 2 cut(s) 66, 267
BtgZI GCGATG 1 cut(s) 544
BtsCI GGATG 2 cut(s) 49, 277
BtsIMutI CAGTG 2 cut(s) 156, 312
BveI ACCTGC 2 cut(s) 65, 189
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 345
Csp6I GTAC 4 cut(s) 88, 108, 583, 642
CviAII CATG 3 cut(s) 139, 208, 263
CviJI RGCY 6 cut(s) 66, 97, 226, 250, 267, 373
CviKI_1 RGCY 6 cut(s) 66, 97, 226, 250, 267, 373
CviQI GTAC 4 cut(s) 88, 108, 583, 642
DdeI CTNAG 2 cut(s) 374, 649
DpnI GATC 3 cut(s) 194, 474, 590
DpnII GATC 3 cut(s) 192, 472, 588
EaeI YGGCCR 1 cut(s) 265
EciI GGCGGA 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 345
Eco81I CCTNAGG 1 cut(s) 649
Eco88I CYCGRG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 3 cut(s) 142, 211, 266
FaqI GGGAC 1 cut(s) 303
FatI CATG 3 cut(s) 138, 207, 262
FblI GTMKAC 2 cut(s) 37, 614
Fnu4HI GCNGC 2 cut(s) 327, 403
FokI GGATG 2 cut(s) 56, 284
Fsp4HI GCNGC 2 cut(s) 327, 403
FspBI CTAG 3 cut(s) 62, 608, 702
GluI GCNGC 2 cut(s) 327, 403
HaeIII GGCC 2 cut(s) 66, 267
HapII CCGG 4 cut(s) 76, 98, 199, 268
Hin1II CATG 3 cut(s) 142, 211, 266
HinfI GANTC 1 cut(s) 553
HpaII CCGG 4 cut(s) 76, 98, 199, 268
HphI GGTGA 2 cut(s) 202, 529
Hpy166II GTNNAC 4 cut(s) 38, 283, 615, 621
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 3 cut(s) 27, 491, 608
Hpy8I GTNNAC 4 cut(s) 38, 283, 615, 621
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 402
HpyF3I CTNAG 2 cut(s) 374, 649
HpySE526I ACGT 1 cut(s) 617
Hsp92II CATG 3 cut(s) 142, 211, 266
Kzo9I GATC 3 cut(s) 192, 472, 588
LmnI GCTCC 1 cut(s) 255
LweI GCATC 2 cut(s) 34, 491
MaeI CTAG 3 cut(s) 62, 608, 702
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 194, 474, 590
MboI GATC 3 cut(s) 192, 472, 588
MboII GAAGA 2 cut(s) 204, 436
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 3 cut(s) 123, 308, 574
MnlI CCTC 8 cut(s) 74, 196, 369, 372, 463, 629, 632, 644
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 1 cut(s) 563
MspI CCGG 4 cut(s) 76, 98, 199, 268
MspR9I CCNGG 2 cut(s) 76, 269
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 2 cut(s) 273, 402
NciI CCSGG 2 cut(s) 76, 269
NdeII GATC 3 cut(s) 192, 472, 588
NlaIII CATG 3 cut(s) 142, 211, 266
NlaIV GGNNCC 5 cut(s) 31, 347, 474, 548, 655
NmuCI GTSAC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 553
PflMI CCANNNNNTGG 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 2 cut(s) 328, 404
Ppu21I YACGTR 1 cut(s) 618
PspN4I GGNNCC 5 cut(s) 31, 347, 474, 548, 655
PspPI GGNCC 1 cut(s) 345
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 4 cut(s) 89, 109, 584, 643
RsaNI GTAC 4 cut(s) 88, 108, 583, 642
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 2 cut(s) 327, 403
Sau3AI GATC 3 cut(s) 192, 472, 588
Sau96I GGNCC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 76, 269
SduI GDGCHC 1 cut(s) 658
SetI ASST 9 cut(s) 59, 85, 183, 252, 519, 620, 643, 650, 655
SfaNI GCATC 2 cut(s) 34, 491
SinI GGWCC 1 cut(s) 345
Sse9I AATT 3 cut(s) 123, 308, 574
SsiI CCGC 4 cut(s) 51, 146, 327, 403
SspMI CTAG 3 cut(s) 62, 608, 702
StyD4I CCNGG 2 cut(s) 74, 267
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 625
TaiI ACGT 1 cut(s) 620
TaqI TCGA 2 cut(s) 492, 685
TasI AATT 3 cut(s) 123, 308, 574
TatI WGTACW 2 cut(s) 87, 107
TauI GCSGC 2 cut(s) 329, 405
TfiI GAWTC 1 cut(s) 553
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 2 cut(s) 156, 319
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 4 cut(s) 162, 317, 437, 451
TspRI CASTG 2 cut(s) 156, 319
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 345
XbaI TCTAGA 1 cut(s) 607
XmaJI CCTAGG 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 37, 614
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 3 cut(s) 62, 608, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.