Rmu_sc0005961.1_g000010

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005961.1
OG0000139
Physical Location & Seq
Reverse (-)
61046 .. 61393
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005961.1_g000010.1.cds

Sequence Viewer

Length: 348 bp
atgtcggaggaggaggacgttttcgatctccttgaagatattgtagtgcggattctgtgtcggttgccagttaaatctttgatccggttcagttgtgtgtcgaaaaggtggcgttctattatcatttgtgaccctcaatttgccaagtctcacgtcccgctagcatctcagcagagaaccctctgtcatgatttaccacatgtgtttgcttcacgcttccattggcatagcgatgtgagtttcattacggataatggtgcaatagtgatcagactatttgagaaggagttggtcaggattgaatgcggtaaaggtgagaagccgctgcagcagcctatatatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

6.95

Isoelectric Point (pI)

69.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 49, 158, 306, 323
AclWI GGATC 1 cut(s) 76
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 2 cut(s) 35, 302
AjiI CACGTC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 325, 328, 331
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AsuHPI GGTGA 1 cut(s) 326
AsuNHI GCTAGC 1 cut(s) 160
BbvI GCAGC 3 cut(s) 312, 340, 343
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 326
BisI GCNGC 4 cut(s) 323, 326, 329, 332
BlsI GCNGC 4 cut(s) 324, 327, 330, 333
BmgBI CACGTC 1 cut(s) 154
BmsI GCATC 1 cut(s) 173
BmtI GCTAGC 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 23, 26
BseXI GCAGC 3 cut(s) 312, 340, 343
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 308
Bsp143I GATC 3 cut(s) 25, 81, 267
BspACI CCGC 4 cut(s) 49, 158, 306, 323
BspCNI CTCAG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 330
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 68
BssMI GATC 3 cut(s) 25, 81, 267
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 168
BstKTI GATC 3 cut(s) 28, 84, 270
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 3 cut(s) 25, 81, 267
BstMWI GCNNNNNNNGC 2 cut(s) 328, 331
BstNSI RCATGY 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 3 cut(s) 312, 340, 343
BtgZI GCGATG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 187
CviAII CATG 2 cut(s) 188, 200
CviJI RGCY 2 cut(s) 322, 334
CviKI_1 RGCY 2 cut(s) 322, 334
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 27, 83, 269
DpnII GATC 3 cut(s) 25, 81, 267
FaeI CATG 2 cut(s) 191, 203
FaiI YATR 6 cut(s) 189, 201, 228, 338, 340, 342
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 187, 199
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 323, 326, 329, 332
Fsp4HI GCNGC 4 cut(s) 323, 326, 329, 332
FspBI CTAG 1 cut(s) 161
GluI GCNGC 4 cut(s) 323, 326, 329, 332
HapII CCGG 1 cut(s) 85
Hin1II CATG 2 cut(s) 191, 203
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 7, 272
Hpy188III TCNNGA 2 cut(s) 188, 295
HpyAV CCTTC 1 cut(s) 277
HpyCH4IV ACGT 2 cut(s) 18, 153
HpyCH4V TGCA 2 cut(s) 260, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 331
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 2 cut(s) 18, 153
Hsp92II CATG 2 cut(s) 191, 203
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 3 cut(s) 25, 81, 267
LpnPI CCDG 3 cut(s) 81, 98, 280
Lsp1109I GCAGC 3 cut(s) 312, 340, 343
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 161
MaeII ACGT 2 cut(s) 18, 153
MaeIII GTNAC 1 cut(s) 128
MalI GATC 3 cut(s) 27, 83, 269
MboI GATC 3 cut(s) 25, 81, 267
MboII GAAGA 1 cut(s) 47
MluCI AATT 1 cut(s) 137
MnlI CCTC 4 cut(s) 4, 7, 144, 191
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 328, 331
NdeII GATC 3 cut(s) 25, 81, 267
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 2 cut(s) 191, 203
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 203
PagI TCATGA 1 cut(s) 187
PciI ACATGT 1 cut(s) 199
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 4 cut(s) 324, 327, 330, 333
PscI ACATGT 1 cut(s) 199
PstI CTGCAG 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 4 cut(s) 323, 326, 329, 332
Sau3AI GATC 3 cut(s) 25, 81, 267
SetI ASST 4 cut(s) 21, 110, 156, 316
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 1 cut(s) 137
SsiI CCGC 4 cut(s) 49, 158, 306, 323
SspMI CTAG 1 cut(s) 161
TaiI ACGT 2 cut(s) 21, 156
TaqI TCGA 2 cut(s) 24, 101
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 3 cut(s) 325, 328, 331
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 203
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.