FvH4_3g42303

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000139
Physical Location & Seq
Forward (+)
35317195 .. 35321017
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42303.t1

Sequence Viewer

Length: 810 bp
ATGGCCGCTGATGAGTACAAACTTGTTTTCTTTGATCCCTCAGATTCTGCCGTGCACATATTTTCGACCAGGGATAGCAAATGGAAAGTTATCAAATTTGCTCCTCATTCGTTATTCCCTGAACATGATGGCAGGCCTCTTTTAGTTTCAAATGGAGCATGTCATTGGGTCAGTAATGGGGTTCCGGAACCAGCTGTCTATGCTTTTGATTTGAAAGGGGAGGAGTTCCGTCAATTGCCATTGCCTCTTCTTGCTTTGATGCCAGAACCAGATTTCTTGCCTGCGAAACAGATAGCTACTCAGGTTCTCAGAGAAGGATGCCTTTGTGTATCGTCTCGGAACTGGCATGGAAACGTTGAATTTTGGGAGATGAAAGAGTATGGGGTCCCTGAATCTTGGGTTAAACTTTTTCATTTCAGTGTGCAAGATTTACCAGATGTTTTTGCTTCAGCAAATGTTTGGTTTCCTGTTTTGGTTACAGAATGCGTGTATGGTTGGATTCCTGCTTTTGTTACAGAGGGCGGTACAGTTGTGATGCTCCTTGGCAAAGAGTTGGTCAGGATTGAATGTCGTAGAGAAGGGAAGCCTTTGGGAATTGCTGTGTCCATGTTGACATTCTTTGATCTCCCTGAAGATGTTGTGGTGAAGATTCTGTTTAATATCTCCCAAACCCTCAAGTTCAGCTCTCACACTCCAGCCGGAACTCCTAGCTCGCTTCTTCATCTACAGCCTCCCATATCGGGTAAGTTTTTCTTTGTCTCCAGATTCTGCTCATATTTCGCTGTTGATCACATACATAGATTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

270

Amino Acids

30.37

Weight (kDa)

5.92

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 149 3.5e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 2 cut(s) 6, 522
AclI AACGTT 1 cut(s) 354
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 95, 359
AcuI CTGAAG 2 cut(s) 432, 651
AfaI GTAC 2 cut(s) 17, 526
AfiI CCNNNNNNNGG 1 cut(s) 740
AgsI TTSAA 4 cut(s) 150, 214, 359, 566
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 4 cut(s) 194, 296, 684, 711
AluI AGCT 4 cut(s) 194, 296, 684, 711
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 339, 763
Alw44I GTGCAC 1 cut(s) 53
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 2 cut(s) 47, 768
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 2 cut(s) 3, 134
ApaLI GTGCAC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 95, 359
ArsI GACNNNNNNTTYG 2 cut(s) 540, 572
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 655
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 57
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 2 cut(s) 339, 763
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 1 cut(s) 725
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 4 cut(s) 183, 189, 386, 387
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 249, 308, 525
BpmI CTGGAG 2 cut(s) 678, 745
BpuEI CTTGAG 1 cut(s) 659
BsaJI CCNNGG 2 cut(s) 69, 541
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 69, 541
BseGI GGATG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 740
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 3 cut(s) 54, 314, 322
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 2 cut(s) 93, 236
BseSI GKGCMC 1 cut(s) 57
BshFI GGCC 2 cut(s) 5, 136
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 185, 699
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 740
BsmAI GTCTC 2 cut(s) 339, 763
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 2 cut(s) 5, 136
Bsp1286I GDGCHC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 3 cut(s) 34, 622, 787
BspACI CCGC 2 cut(s) 6, 522
BspANI GGCC 2 cut(s) 5, 136
BspCNI CTCAG 3 cut(s) 53, 313, 321
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 4 cut(s) 183, 189, 386, 387
BspPI GGATC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 69, 541
BssMI GATC 3 cut(s) 34, 622, 787
BssT1I CCWWGG 1 cut(s) 541
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 134, 282, 713
BstDEI CTNAG 3 cut(s) 40, 300, 308
BstF5I GGATG 1 cut(s) 323
BstKTI GATC 3 cut(s) 37, 625, 790
BstMAI GTCTC 2 cut(s) 339, 763
BstMBI GATC 3 cut(s) 34, 622, 787
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 725
BstSLI GKGCMC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 5, 136
BtsCI GGATG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 134, 282, 713
CaiI CAGNNNCTG 2 cut(s) 47, 768
Cfr13I GGNCC 1 cut(s) 385
Csp6I GTAC 2 cut(s) 16, 525
CviAII CATG 4 cut(s) 125, 159, 347, 607
CviJI RGCY 9 cut(s) 5, 136, 194, 296, 586, 684, 698, 711, 730
CviKI_1 RGCY 9 cut(s) 5, 136, 194, 296, 586, 684, 698, 711, 730
CviQI GTAC 2 cut(s) 16, 525
DdeI CTNAG 3 cut(s) 40, 300, 308
DpnI GATC 3 cut(s) 36, 624, 789
DpnII GATC 3 cut(s) 34, 622, 787
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 541
Eco147I AGGCCT 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 432, 651
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 4 cut(s) 128, 162, 350, 610
FalI AAGNNNNNCTT 4 cut(s) 306, 338, 737, 769
FaqI GGGAC 1 cut(s) 371
FatI CATG 4 cut(s) 124, 158, 346, 606
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 708
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 2 cut(s) 678, 745
HaeIII GGCC 2 cut(s) 5, 136
HapII CCGG 2 cut(s) 185, 699
Hin1II CATG 4 cut(s) 128, 162, 350, 610
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HinfI GANTC 5 cut(s) 44, 392, 499, 649, 765
HpaII CCGG 2 cut(s) 185, 699
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 2 cut(s) 55, 612
Hpy188I TCNGA 3 cut(s) 43, 311, 339
Hpy188III TCNNGA 3 cut(s) 185, 559, 762
Hpy8I GTNNAC 2 cut(s) 55, 612
HpyAV CCTTC 2 cut(s) 308, 572
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 2 cut(s) 55, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 40, 300, 308
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 4 cut(s) 128, 162, 350, 610
KflI GGGWCCC 1 cut(s) 385
Kpn2I TCCGGA 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 3 cut(s) 34, 622, 787
LmnI GCTCC 3 cut(s) 106, 155, 543
LweI GCATC 3 cut(s) 249, 308, 525
MaeI CTAG 1 cut(s) 708
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 475, 511
MalI GATC 3 cut(s) 36, 624, 789
MboI GATC 3 cut(s) 34, 622, 787
MboII GAAGA 4 cut(s) 239, 644, 658, 710
MfeI CAATTG 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 4 cut(s) 95, 233, 359, 594
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 8 cut(s) 49, 114, 147, 214, 255, 511, 683, 741
MroI TCCGGA 1 cut(s) 184
MseI TTAA 2 cut(s) 402, 657
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 8, 194
MspI CCGG 2 cut(s) 185, 699
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 488
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 3 cut(s) 34, 622, 787
NlaIII CATG 4 cut(s) 128, 162, 350, 610
NlaIV GGNNCC 4 cut(s) 183, 189, 386, 387
NspI RCATGY 1 cut(s) 162
PceI AGGCCT 1 cut(s) 136
PctI GAATGC 1 cut(s) 488
PfeI GAWTC 5 cut(s) 44, 392, 499, 649, 765
PkrI GCNGC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 385
Psp1406I AACGTT 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 4 cut(s) 183, 189, 386, 387
PspPI GGNCC 1 cut(s) 385
PspPPI RGGWCCY 1 cut(s) 385
PstNI CAGNNNCTG 2 cut(s) 47, 768
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 2 cut(s) 17, 526
RsaNI GTAC 2 cut(s) 16, 525
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 2 cut(s) 402, 657
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 34, 622, 787
Sau96I GGNCC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 57
SetI ASST 6 cut(s) 196, 298, 306, 357, 686, 713
SfaNI GCATC 3 cut(s) 249, 308, 525
SfcI CTRYAG 1 cut(s) 725
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 4 cut(s) 95, 233, 359, 594
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 2 cut(s) 6, 522
SspMI CTAG 1 cut(s) 708
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 65
TasI AATT 4 cut(s) 95, 233, 359, 594
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 44, 392, 499, 649, 765
Tru1I TTAA 2 cut(s) 402, 657
Tru9I TTAA 2 cut(s) 402, 657
TscAI CASTG 1 cut(s) 424
TspDTI ATGAA 3 cut(s) 386, 401, 710
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 424
VneI GTGCAC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 2 cut(s) 95, 359
XceI RCATGY 1 cut(s) 162
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.