Rroxscaffold_1G00005740

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000139
Physical Location & Seq
Forward (+)
7801328 .. 7804638
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005740.1

Sequence Viewer

Length: 801 bp
ATGAAACAACGCTCGCATCTCTCTCTCTCTCACATCCTCCATTATCGTCCGAAAAACGAGCATCAGCTCTCACCTCTCTCTCGCTCCACCGGCCACCGTCACTACCAAATCACCTCCCCACCTTCAAAGTCGATCGTACGCGGTGCGGGAGGCGGCCTTGCGCTGCGAGGAGGCAGCCTTGCGCTGCGAACCACGGAGACGACGGCGGAGGCCGAAAAACCCGTTTTAGTTCCAAACGTGATAACTCGAGCTACCGGCCACGAAACCTTCCCAAACTTCACCCATAGATTCGCCTTGACCTTCGAAGCCCCCGAACCACCCTTGCACGGCGGCGCGCTCTGCGGAAGCGAGGAGGAGTTTCGGCAAGTGCCATTGCCGCCTGTTTTGTGGCAAAATGAAGAAGACAGGAATCCGACCGAGATAACAACTCTGGTTCATTTAGGAGGATACCTCTGCATATGGTCTCGGAAGCGTTATAATCCCGACAAAGGTGAAGTTTGGGCGATGACAGAGTATGGGGTGCCTGAATCTTGGGTTAAACTCTTTAATTTTAGAGTACGAGATTTACCAGATGTCTTTGCTTCATTATACAGTACATGGGATCTGTGTTTCATTACAGAAAGCGGTACAATGGTGATAAGCCTGCGTAAGGAGTTGCTTTGGATTGAATGCCATAATGAAGAAAAGCCGATCTGCAGCGGAAGATATAGGCTTGAGGAGGTTCACCCTGAGGTGCCGGGGTGTTTATTTCATTTTCATGCTACCGCTTATGATGAAACTATACTTTCTGTAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

266

Amino Acids

30.2

Weight (kDa)

6.27

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AccB1I GGYRCC 2 cut(s) 520, 733
AccII CGCG 2 cut(s) 141, 335
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 2 cut(s) 91, 256
AfaI GTAC 4 cut(s) 138, 558, 595, 628
AfiI CCNNNNNNNGG 3 cut(s) 326, 488, 649
AgsI TTSAA 2 cut(s) 126, 668
AluBI AGCT 3 cut(s) 67, 251, 794
AluI AGCT 3 cut(s) 67, 251, 794
Alw26I GTCTC 2 cut(s) 191, 468
AlwI GGATC 1 cut(s) 609
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 4 cut(s) 91, 154, 210, 256
ApeKI GCWGC 4 cut(s) 163, 174, 184, 696
AspLEI GCGC 4 cut(s) 163, 184, 335, 337
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 6 cut(s) 63, 103, 271, 503, 646, 716
AsuII TTCGAA 1 cut(s) 303
AvaI CYCGRG 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 729
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BanI GGYRCC 2 cut(s) 520, 733
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 4 cut(s) 150, 171, 186, 708
BceAI ACGGC 2 cut(s) 219, 343
BciVI GTATCC 1 cut(s) 440
BcnI CCSGG 1 cut(s) 738
BcoDI GTCTC 2 cut(s) 191, 468
BfmI CTRYAG 2 cut(s) 694, 789
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 7 cut(s) 154, 164, 175, 185, 331, 377, 697
BlsI GCNGC 7 cut(s) 155, 165, 176, 186, 332, 378, 698
Bme1390I CCNGG 1 cut(s) 738
BmeT110I CYCGRG 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 522, 735
BmrFI CCNGG 1 cut(s) 738
BmsI GCATC 2 cut(s) 25, 70
BpiI GAAGAC 1 cut(s) 408
BplI GAGNNNNNCTC 2 cut(s) 435, 467
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 734
BpuMI CCSGG 1 cut(s) 738
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 2 cut(s) 192, 737
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 488, 649
Bse118I RCCGGY 2 cut(s) 89, 254
Bse21I CCTNAGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 192, 737
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 3 cut(s) 326, 488, 649
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 720
BsePI GCGCGC 1 cut(s) 333
BseRI GAGGAG 4 cut(s) 183, 365, 368, 731
BseXI GCAGC 4 cut(s) 150, 171, 186, 708
Bsh1236I CGCG 2 cut(s) 141, 335
Bsh1285I CGRYCG 2 cut(s) 135, 417
BshFI GGCC 4 cut(s) 93, 156, 212, 258
BshNI GGYRCC 2 cut(s) 520, 733
BsiEI CGRYCG 2 cut(s) 135, 417
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 3 cut(s) 90, 255, 737
BsiWI CGTACG 1 cut(s) 136
BslI CCNNNNNNNGG 3 cut(s) 326, 488, 649
BsmAI GTCTC 2 cut(s) 191, 468
BsmBI CGTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 4 cut(s) 93, 156, 212, 258
Bso31I GGTCTC 1 cut(s) 468
BsoBI CYCGRG 1 cut(s) 246
Bsp119I TTCGAA 1 cut(s) 303
Bsp143I GATC 3 cut(s) 132, 601, 690
BspANI GGCC 4 cut(s) 93, 156, 212, 258
BspCNI CTCAG 1 cut(s) 721
BspFNI CGCG 2 cut(s) 141, 335
BspLI GGNNCC 2 cut(s) 522, 735
BspMAI CTGCAG 1 cut(s) 698
BspPI GGATC 1 cut(s) 609
BspT104I TTCGAA 1 cut(s) 303
BspT107I GGYRCC 2 cut(s) 520, 733
BspTNI GGTCTC 1 cut(s) 468
BsrDI GCAATG 1 cut(s) 371
BsrFI RCCGGY 2 cut(s) 89, 254
BssAI RCCGGY 2 cut(s) 89, 254
BssECI CCNNGG 2 cut(s) 192, 737
BssHII GCGCGC 1 cut(s) 333
BssMI GATC 3 cut(s) 132, 601, 690
Bst4CI ACNGT 2 cut(s) 98, 593
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 14, 335, 644
BstDEI CTNAG 1 cut(s) 729
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 647
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 2 cut(s) 141, 335
BstHHI GCGC 4 cut(s) 163, 184, 335, 337
BstKTI GATC 3 cut(s) 135, 604, 693
BstMAI GTCTC 2 cut(s) 191, 468
BstMBI GATC 3 cut(s) 132, 601, 690
BstMCI CGRYCG 2 cut(s) 135, 417
BstMWI GCNNNNNNNGC 3 cut(s) 90, 339, 376
BstSCI CCNGG 1 cut(s) 736
BstSFI CTRYAG 2 cut(s) 694, 789
BstUI CGCG 2 cut(s) 141, 335
BstV1I GCAGC 4 cut(s) 150, 171, 186, 708
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
Bsu36I CCTNAGG 1 cut(s) 729
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 4 cut(s) 93, 156, 212, 258
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 518
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 3 cut(s) 14, 335, 644
CfoI GCGC 4 cut(s) 163, 184, 335, 337
Cfr10I RCCGGY 2 cut(s) 89, 254
Csp6I GTAC 4 cut(s) 137, 557, 594, 627
CviAII CATG 2 cut(s) 597, 758
CviQI GTAC 4 cut(s) 137, 557, 594, 627
DdeI CTNAG 1 cut(s) 729
DpnI GATC 3 cut(s) 134, 603, 692
DpnII GATC 3 cut(s) 132, 601, 690
EaeI YGGCCR 2 cut(s) 91, 256
EciI GGCGGA 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 468
Eco81I CCTNAGG 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 647
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 600, 761
FatI CATG 2 cut(s) 596, 757
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 458
Fnu4HI GCNGC 7 cut(s) 154, 164, 175, 185, 331, 377, 697
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 7 cut(s) 154, 164, 175, 185, 331, 377, 697
GlaI GCGC 4 cut(s) 162, 183, 334, 336
GluI GCNGC 7 cut(s) 154, 164, 175, 185, 331, 377, 697
HaeIII GGCC 4 cut(s) 93, 156, 212, 258
HapII CCGG 3 cut(s) 90, 255, 737
HhaI GCGC 4 cut(s) 163, 184, 335, 337
Hin1II CATG 2 cut(s) 600, 761
Hin6I GCGC 4 cut(s) 161, 182, 333, 335
HinP1I GCGC 4 cut(s) 161, 182, 333, 335
HinfI GANTC 3 cut(s) 288, 409, 527
HpaII CCGG 3 cut(s) 90, 255, 737
HphI GGTGA 6 cut(s) 63, 103, 271, 503, 646, 716
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 3 cut(s) 51, 414, 468
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 724
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 3 cut(s) 132, 277, 310
HpyCH4III ACNGT 2 cut(s) 98, 593
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 325, 456, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 339, 376
HpyF3I CTNAG 1 cut(s) 729
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 600, 761
HspAI GCGC 4 cut(s) 161, 182, 333, 335
Kzo9I GATC 3 cut(s) 132, 601, 690
LmnI GCTCC 1 cut(s) 89
Lsp1109I GCAGC 4 cut(s) 150, 171, 186, 708
LweI GCATC 2 cut(s) 25, 70
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 98
MalI GATC 3 cut(s) 134, 603, 692
MboI GATC 3 cut(s) 132, 601, 690
MboII GAAGA 4 cut(s) 410, 413, 692, 714
MflI RGATCY 1 cut(s) 601
MluCI AATT 1 cut(s) 547
MmeI TCCRAC 1 cut(s) 437
MseI TTAA 2 cut(s) 537, 546
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 699
MspI CCGG 3 cut(s) 90, 255, 737
MspR9I CCNGG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 674
MvnI CGCG 2 cut(s) 141, 335
MwoI GCNNNNNNNGC 3 cut(s) 90, 339, 376
NciI CCSGG 1 cut(s) 738
NdeI CATATG 1 cut(s) 458
NdeII GATC 3 cut(s) 132, 601, 690
NlaIII CATG 2 cut(s) 600, 761
NlaIV GGNNCC 2 cut(s) 522, 735
NmuCI GTSAC 1 cut(s) 98
NspV TTCGAA 1 cut(s) 303
PaeR7I CTCGAG 1 cut(s) 246
PauI GCGCGC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 3 cut(s) 288, 409, 527
Pfl23II CGTACG 1 cut(s) 136
PkrI GCNGC 7 cut(s) 155, 165, 176, 186, 332, 378, 698
Ple19I CGATCG 1 cut(s) 135
PsiI TTATAA 1 cut(s) 477
PspLI CGTACG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 522, 735
PspXI VCTCGAGB 1 cut(s) 246
PstI CTGCAG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 601
PteI GCGCGC 1 cut(s) 333
PvuI CGATCG 1 cut(s) 135
RsaI GTAC 4 cut(s) 138, 558, 595, 628
RsaNI GTAC 4 cut(s) 137, 557, 594, 627
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 2 cut(s) 537, 546
SatI GCNGC 7 cut(s) 154, 164, 175, 185, 331, 377, 697
Sau3AI GATC 3 cut(s) 132, 601, 690
ScrFI CCNGG 1 cut(s) 738
SfaNI GCATC 2 cut(s) 25, 70
SfcI CTRYAG 2 cut(s) 694, 789
Sfr274I CTCGAG 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 2 cut(s) 246, 713
SmoI CTYRAG 2 cut(s) 246, 713
Sse9I AATT 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 736
TaaI ACNGT 2 cut(s) 98, 593
TaiI ACGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 131, 247, 303
TaqII GACCGA 1 cut(s) 431
TasI AATT 1 cut(s) 547
TatI WGTACW 1 cut(s) 593
TauI GCSGC 3 cut(s) 156, 333, 379
TfiI GAWTC 3 cut(s) 288, 409, 527
Tru1I TTAA 2 cut(s) 537, 546
Tru9I TTAA 2 cut(s) 537, 546
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 4 cut(s) 163, 174, 184, 696
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 9 cut(s) 17, 411, 425, 573, 601, 693, 740, 746, 789
TspGWI ACGGA 1 cut(s) 209
XagI CCTNNNNNAGG 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.