Rorug05G0435200

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000139
Physical Location & Seq
Forward (+)
60407048 .. 60409094
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0435200.1

Sequence Viewer

Length: 1716 bp
ATGGCGAAAGTAAAAATTGCAGGGGCATGGGCGGGCGTGCTAGAAGTCGAATTGGACAATTGGACAGTATCAATGCTGAGACAAGAGGTTGCAAAGCGATCGAACTGCGAGCCCAACTCGATCAATCTGATCTGCGCAGGCAAAGTATTGAAGGATGGAGATGGGAGCGAGAATTTGACCCAATTAGGTATTAAGAACAACGCTAAGGTTCTTGCTAGTAGGGTTAGTGCTCAGGAGGGCAAGTCTTTGGGTGAGGAGTTGATGGCCGAAGGCGAACGCTCTCGGAGATTGGCTCGAATCAAGGCAGCTGCGACTGCAATGGCCAAGAGACATGCAGATGGTTCATTGCCAATTGAAGACTTCAATATAGAACTTGAAGATCAAAGCGGAAAGAAAGTAAAGATGGGAACCGAGACTGATCAGCAGGCAATCATGATGGGTCTGATGCTTCATACAGATGCAAAGAAAATGATTAAAGAACAGAATTACAAAGATGCATTGGAGGTGTTGAGCATGGGAGAGGAGGCCTTCTCTCTATGCGACCCCAAGGTTATTGAGCTGGTTGACAATCCTTCTATACTGCAAATTGATACGGTTTGGTGTTATTTCATGCTCAGAGACATCAACTGTCTCTCGGTGGCGGGAGTTCGGCTTGAGAAGGCTAGAGAAGGACTCGAAAGAGCTCACGGGAAGGATGCTTCTCGTGTGAGACTGCTTCAGGCTGGTAGGTATCCGGAGCGTGCACTACATTTGAGACTGGAGCTGCTTGAAGGGGTGGTGGCGTATCATAGTGGTGAGGTTGACAAATCTAAGAAGGTTCTGACTTCTGCCCAAGAAAAGTTCAGGCTGCTACAAGTATCAGATGAATCTCTTTCACTTGTGATGAGCATGGGATTTAAAGAACTAGATGCAAAAAGGGCTTTGCGGATGAGCAATCAAGATGTTTCCAGTGCCGTTGATTTTCTTGTTGAGCAAAAGGCAAAGAGAGACCAAAAACGGGAAGATGATATCCGGCGGCAACATGAAATTAAGGAGCAAAAGACATATGGTGTGACACCCCTGAAGAAAGCTGTGGATTTGGAGAGATTGAATGAATTGGTCTTCATTGGGTTCCAAAAAGAGCTTGTTGCTGAAGCGCTTAGAAGAAATGAGAATGACAGTGAGAAGGCATTAGATGATTTGACAAATCCAGAAACTAATTCTTCCATACAAGAACAACTTGAATCAAGGAAAAGGAAACGTCAGCGCCGAGCAGTAGATGCTTCAGTTGAAGCACTTGTACGCATGGGCTTTGAAAGATCATTAATAGACGAAGCTTTGCAGGCTGGAGGGACAATGGACGACGTAATCCATCGATTACTCTCGGTACAAGTATCAAATCCAACAAATGGTGTTAGCCAATCAGCGGCAATCTCCACAGTTTCTGATAACAACAATAGCCAATCTGATGCTGCTAGTGACATTGCGAATTCTCTTGCTTCAATGCTTGAGAATCAAAATGATCAAGCTGGCAGCTCTAGTAATGCGTCAGAGCTTCAGAATCAAAATGATCAAGCTGGAAGTTCTAGTAATGCATCAGAGTGTGATGCAGAAATGGAGAGTGAACTTGCTGAAGAACTGGCACAACAAGACGCTCTCTCTGACTATAACGTTGAAGTTACCAAAGAAGGTGAAGCCATAGCCAAGTACTTGGTTCTTCTGGATTCAGCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

571

Amino Acids

63.08

Weight (kDa)

5.05

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_7 PF22562 291 - 325 6.5e-06 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 1388
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 6 cut(s) 32, 387, 641, 925, 1015, 1406
AclI AACGTT 1 cut(s) 1650
AcoI YGGCCR 2 cut(s) 264, 321
AcsI RAATTY 2 cut(s) 172, 1468
AcuI CTGAAG 6 cut(s) 701, 1082, 1152, 1248, 1520, 1632
AfaI GTAC 3 cut(s) 1281, 1368, 1688
AfeI AGCGCT 1 cut(s) 1137
AfiI CCNNNNNNNGG 3 cut(s) 997, 1388, 1405
Alw21I GWGCWC 3 cut(s) 232, 685, 745
Alw26I GTCTC 8 cut(s) 73, 322, 407, 612, 635, 703, 748, 981
Alw44I GTGCAC 1 cut(s) 741
AlwNI CAGNNNCTG 1 cut(s) 1424
Aor13HI TCCGGA 1 cut(s) 733
Aor51HI AGCGCT 1 cut(s) 1137
AoxI GGCC 3 cut(s) 264, 321, 525
ApaLI GTGCAC 1 cut(s) 741
ApeKI GCWGC 6 cut(s) 305, 308, 763, 847, 1451, 1512
ApoI RAATTY 2 cut(s) 172, 1468
AseI ATTAAT 1 cut(s) 1304
AspLEI GCGC 3 cut(s) 137, 1138, 1248
AsuHPI GGTGA 3 cut(s) 263, 806, 1682
BaeGI GKGCMC 1 cut(s) 745
BalI TGGCCA 1 cut(s) 323
BanII GRGCYC 2 cut(s) 114, 685
BarI GAAGNNNNNNTAC 2 cut(s) 1263, 1295
BauI CACGAG 1 cut(s) 702
BbsI GAAGAC 2 cut(s) 363, 1093
Bbv12I GWGCWC 3 cut(s) 232, 685, 745
BbvI GCAGC 6 cut(s) 295, 317, 750, 834, 1438, 1524
BccI CCATC 7 cut(s) 149, 155, 256, 332, 397, 430, 1359
BceAI ACGGC 1 cut(s) 938
BcgI CGANNNNNNTGC 4 cut(s) 81, 87, 115, 121
BciVI GTATCC 1 cut(s) 741
BclI TGATCA 3 cut(s) 418, 1501, 1549
BcoDI GTCTC 8 cut(s) 73, 322, 407, 612, 635, 703, 748, 981
BfaI CTAG 7 cut(s) 41, 216, 663, 905, 1455, 1518, 1566
BfoI RGCGCY 2 cut(s) 1139, 1249
BfuI GTATCC 1 cut(s) 741
BisI GCNGC 8 cut(s) 306, 309, 764, 848, 1016, 1407, 1452, 1513
BlsI GCNGC 8 cut(s) 307, 310, 765, 849, 1017, 1408, 1453, 1514
BmcAI AGTACT 1 cut(s) 1688
BmiI GGNNCC 2 cut(s) 409, 1112
BmsI GCATC 9 cut(s) 435, 448, 484, 685, 898, 1249, 1438, 1576, 1583
BpiI GAAGAC 2 cut(s) 363, 1093
BplI GAGNNNNNCTC 8 cut(s) 101, 133, 277, 309, 515, 547, 657, 689
BpmI CTGGAG 2 cut(s) 779, 1347
Bpu10I CCTNAGC 2 cut(s) 204, 231
BpuEI CTTGAG 2 cut(s) 674, 1508
Bsa29I ATCGAT 1 cut(s) 1354
BsaI GGTCTC 1 cut(s) 981
BsaJI CCNNGG 1 cut(s) 546
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 997, 1388, 1405
Bse1I ACTGG 3 cut(s) 762, 948, 1623
Bse3DI GCAATG 3 cut(s) 324, 344, 1461
BseAI TCCGGA 1 cut(s) 733
BseCI ATCGAT 1 cut(s) 1354
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 3 cut(s) 160, 700, 933
BseLI CCNNNNNNNGG 3 cut(s) 997, 1388, 1405
BseMI GCAATG 3 cut(s) 324, 344, 1461
BseMII CTCAG 3 cut(s) 68, 245, 628
BseNI ACTGG 3 cut(s) 762, 948, 1623
BseRI GAGGAG 2 cut(s) 269, 536
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 6 cut(s) 295, 317, 750, 834, 1438, 1524
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 3 cut(s) 266, 323, 527
BshVI ATCGAT 1 cut(s) 1354
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 3 cut(s) 232, 685, 745
BsiSI CCGG 2 cut(s) 734, 1012
BslFI GGGAC 1 cut(s) 1345
BslI CCNNNNNNNGG 3 cut(s) 997, 1388, 1405
BsmAI GTCTC 8 cut(s) 73, 322, 407, 612, 635, 703, 748, 981
BsmFI GGGAC 1 cut(s) 1345
BsnI GGCC 3 cut(s) 266, 323, 527
Bso31I GGTCTC 1 cut(s) 981
Bsp1286I GDGCHC 4 cut(s) 114, 232, 685, 745
Bsp13I TCCGGA 1 cut(s) 733
Bsp143I GATC 8 cut(s) 98, 120, 129, 379, 418, 1298, 1501, 1549
BspACI CCGC 6 cut(s) 32, 387, 641, 925, 1015, 1406
BspANI GGCC 3 cut(s) 266, 323, 527
BspCNI CTCAG 3 cut(s) 69, 244, 627
BspDI ATCGAT 1 cut(s) 1354
BspEI TCCGGA 1 cut(s) 733
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 409, 1112
BspTNI GGTCTC 1 cut(s) 981
BsrDI GCAATG 3 cut(s) 324, 344, 1461
BsrI ACTGG 3 cut(s) 762, 948, 1623
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 8 cut(s) 98, 120, 129, 379, 418, 1298, 1501, 1549
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 702
Bst4CI ACNGT 6 cut(s) 67, 595, 629, 1160, 1420, 1713
BstAPI GCANNNNNTGC 1 cut(s) 1259
BstC8I GCNNGC 8 cut(s) 34, 38, 110, 139, 426, 741, 1323, 1510
BstDEI CTNAG 6 cut(s) 77, 204, 231, 614, 810, 1139
BstF5I GGATG 3 cut(s) 160, 700, 933
BstH2I RGCGCY 2 cut(s) 1139, 1249
BstHHI GCGC 3 cut(s) 137, 1138, 1248
BstKTI GATC 8 cut(s) 101, 123, 132, 382, 421, 1301, 1504, 1552
BstMAI GTCTC 8 cut(s) 73, 322, 407, 612, 635, 703, 748, 981
BstMBI GATC 8 cut(s) 98, 120, 129, 379, 418, 1298, 1501, 1549
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 4 cut(s) 314, 917, 1259, 1322
BstNSI RCATGY 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 6 cut(s) 295, 317, 750, 834, 1438, 1524
BstV2I GAAGAC 2 cut(s) 363, 1093
BstXI CCANNNNNNTGG 1 cut(s) 1690
Bsu15I ATCGAT 1 cut(s) 1354
BsuI GTATCC 1 cut(s) 741
BsuRI GGCC 3 cut(s) 266, 323, 527
BsuTUI ATCGAT 1 cut(s) 1354
BtsCI GGATG 3 cut(s) 160, 700, 933
BtsIMutI CAGTG 2 cut(s) 955, 1165
Cac8I GCNNGC 8 cut(s) 34, 38, 110, 139, 426, 741, 1323, 1510
CaiI CAGNNNCTG 1 cut(s) 1424
CciI TCATGA 1 cut(s) 432
CfoI GCGC 3 cut(s) 137, 1138, 1248
ClaI ATCGAT 1 cut(s) 1354
CseI GACGC 2 cut(s) 1515, 1640
Csp6I GTAC 3 cut(s) 1280, 1367, 1687
CviAII CATG 8 cut(s) 27, 332, 433, 514, 610, 889, 1022, 1285
CviQI GTAC 3 cut(s) 1280, 1367, 1687
DdeI CTNAG 6 cut(s) 77, 204, 231, 614, 810, 1139
DpnI GATC 8 cut(s) 100, 122, 131, 381, 420, 1300, 1503, 1551
DpnII GATC 8 cut(s) 98, 120, 129, 379, 418, 1298, 1501, 1549
DraI TTTAAA 1 cut(s) 898
EaeI YGGCCR 2 cut(s) 264, 321
Ecl136II GAGCTC 1 cut(s) 683
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 527
Eco24I GRGCYC 2 cut(s) 114, 685
Eco31I GGTCTC 1 cut(s) 981
Eco32I GATATC 1 cut(s) 1009
Eco47III AGCGCT 1 cut(s) 1137
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 6 cut(s) 701, 1082, 1152, 1248, 1520, 1632
EcoICRI GAGCTC 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 1468
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 1 cut(s) 546
EcoT22I ATGCAT 2 cut(s) 499, 1576
EcoT38I GRGCYC 2 cut(s) 114, 685
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 8 cut(s) 30, 335, 436, 517, 613, 892, 1025, 1288
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FaqI GGGAC 1 cut(s) 1345
FatI CATG 8 cut(s) 26, 331, 432, 513, 609, 888, 1021, 1284
FauI CCCGC 2 cut(s) 25, 634
FauNDI CATATG 1 cut(s) 1045
FbaI TGATCA 3 cut(s) 418, 1501, 1549
Fnu4HI GCNGC 8 cut(s) 306, 309, 764, 848, 1016, 1407, 1452, 1513
FokI GGATG 3 cut(s) 167, 707, 940
FriOI GRGCYC 2 cut(s) 114, 685
Fsp4HI GCNGC 8 cut(s) 306, 309, 764, 848, 1016, 1407, 1452, 1513
FspBI CTAG 7 cut(s) 41, 216, 663, 905, 1455, 1518, 1566
FspI TGCGCA 1 cut(s) 136
GlaI GCGC 3 cut(s) 136, 1137, 1247
GluI GCNGC 8 cut(s) 306, 309, 764, 848, 1016, 1407, 1452, 1513
GsuI CTGGAG 2 cut(s) 779, 1347
HaeII RGCGCY 2 cut(s) 1139, 1249
HaeIII GGCC 3 cut(s) 266, 323, 527
HapII CCGG 2 cut(s) 734, 1012
HgaI GACGC 2 cut(s) 1515, 1640
HhaI GCGC 3 cut(s) 137, 1138, 1248
Hin1II CATG 8 cut(s) 30, 335, 436, 517, 613, 892, 1025, 1288
Hin6I GCGC 3 cut(s) 135, 1136, 1246
HinP1I GCGC 3 cut(s) 135, 1136, 1246
HincII GTYRAC 2 cut(s) 565, 802
HindII GTYRAC 2 cut(s) 565, 802
HindIII AAGCTT 1 cut(s) 1314
HinfI GANTC 7 cut(s) 297, 672, 866, 1223, 1492, 1540, 1703
HpaII CCGG 2 cut(s) 734, 1012
HphI GGTGA 3 cut(s) 263, 806, 1682
Hpy166II GTNNAC 4 cut(s) 565, 743, 802, 1604
Hpy188III TCNNGA 6 cut(s) 233, 433, 734, 938, 1190, 1700
Hpy8I GTNNAC 4 cut(s) 565, 743, 802, 1604
Hpy99I CGWCG 1 cut(s) 1346
HpyCH4III ACNGT 6 cut(s) 67, 595, 629, 1160, 1420, 1713
HpyCH4IV ACGT 3 cut(s) 1240, 1344, 1650
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 917, 1259, 1322
HpyF3I CTNAG 6 cut(s) 77, 204, 231, 614, 810, 1139
HpySE526I ACGT 3 cut(s) 1240, 1344, 1650
Hsp92II CATG 8 cut(s) 30, 335, 436, 517, 613, 892, 1025, 1288
HspAI GCGC 3 cut(s) 135, 1136, 1246
Kpn2I TCCGGA 1 cut(s) 733
Ksp22I TGATCA 3 cut(s) 418, 1501, 1549
Kzo9I GATC 8 cut(s) 98, 120, 129, 379, 418, 1298, 1501, 1549
LmnI GCTCC 4 cut(s) 165, 736, 760, 1033
Lsp1109I GCAGC 6 cut(s) 295, 317, 750, 834, 1438, 1524
LweI GCATC 9 cut(s) 435, 448, 484, 685, 898, 1249, 1438, 1576, 1583
MaeI CTAG 7 cut(s) 41, 216, 663, 905, 1455, 1518, 1566
MaeII ACGT 3 cut(s) 1240, 1344, 1650
MaeIII GTNAC 3 cut(s) 1051, 1457, 1657
MalI GATC 8 cut(s) 100, 122, 131, 381, 420, 1300, 1503, 1551
MboI GATC 8 cut(s) 98, 120, 129, 379, 418, 1298, 1501, 1549
MboII GAAGA 9 cut(s) 368, 389, 1013, 1075, 1093, 1155, 1194, 1625, 1688
MfeI CAATTG 2 cut(s) 58, 351
MhlI GDGCHC 4 cut(s) 114, 232, 685, 745
MlsI TGGCCA 1 cut(s) 323
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 666
MmeI TCCRAC 1 cut(s) 1406
MnlI CCTC 8 cut(s) 79, 229, 247, 496, 514, 517, 790, 1322
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 2 cut(s) 499, 1576
MroI TCCGGA 1 cut(s) 733
MscI TGGCCA 1 cut(s) 323
MseI TTAA 5 cut(s) 192, 474, 897, 1029, 1304
MslI CAYNNNNRTG 4 cut(s) 336, 456, 792, 1579
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 308, 1406
MspI CCGG 2 cut(s) 734, 1012
MunI CAATTG 2 cut(s) 58, 351
MwoI GCNNNNNNNGC 4 cut(s) 314, 917, 1259, 1322
NdeI CATATG 1 cut(s) 1045
NdeII GATC 8 cut(s) 98, 120, 129, 379, 418, 1298, 1501, 1549
NlaIII CATG 8 cut(s) 30, 335, 436, 517, 613, 892, 1025, 1288
NlaIV GGNNCC 2 cut(s) 409, 1112
NmeAIII GCCGAG 1 cut(s) 1274
NmuCI GTSAC 2 cut(s) 1051, 1457
NsbI TGCGCA 1 cut(s) 136
NsiI ATGCAT 2 cut(s) 499, 1576
NspI RCATGY 1 cut(s) 335
PagI TCATGA 1 cut(s) 432
PceI AGGCCT 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 1246
PfeI GAWTC 6 cut(s) 297, 866, 1223, 1492, 1540, 1703
PflMI CCANNNNNTGG 1 cut(s) 1388
PkrI GCNGC 8 cut(s) 307, 310, 765, 849, 1017, 1408, 1453, 1514
Ple19I CGATCG 1 cut(s) 101
PleI GAGTC 1 cut(s) 666
PpsI GAGTC 1 cut(s) 666
PshBI ATTAAT 1 cut(s) 1304
Psp124BI GAGCTC 1 cut(s) 685
Psp1406I AACGTT 1 cut(s) 1650
PspN4I GGNNCC 2 cut(s) 409, 1112
PstNI CAGNNNCTG 1 cut(s) 1424
PvuI CGATCG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 3 cut(s) 1281, 1368, 1688
RsaNI GTAC 3 cut(s) 1280, 1367, 1687
RseI CAYNNNNRTG 4 cut(s) 336, 456, 792, 1579
SacI GAGCTC 1 cut(s) 685
SaqAI TTAA 5 cut(s) 192, 474, 897, 1029, 1304
SatI GCNGC 8 cut(s) 306, 309, 764, 848, 1016, 1407, 1452, 1513
Sau3AI GATC 8 cut(s) 98, 120, 129, 379, 418, 1298, 1501, 1549
ScaI AGTACT 1 cut(s) 1688
SchI GAGTC 1 cut(s) 666
SduI GDGCHC 4 cut(s) 114, 232, 685, 745
SfaNI GCATC 9 cut(s) 435, 448, 484, 685, 898, 1249, 1438, 1576, 1583
SmiMI CAYNNNNRTG 4 cut(s) 336, 456, 792, 1579
SmlI CTYRAG 2 cut(s) 653, 1487
SmoI CTYRAG 2 cut(s) 653, 1487
SseBI AGGCCT 1 cut(s) 527
SsiI CCGC 6 cut(s) 32, 387, 641, 925, 1015, 1406
SspMI CTAG 7 cut(s) 41, 216, 663, 905, 1455, 1518, 1566
SstI GAGCTC 1 cut(s) 685
StuI AGGCCT 1 cut(s) 527
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 6 cut(s) 67, 595, 629, 1160, 1420, 1713
TaiI ACGT 3 cut(s) 1243, 1347, 1653
TaqI TCGA 6 cut(s) 48, 101, 119, 295, 675, 1354
TatI WGTACW 1 cut(s) 1686
TauI GCSGC 2 cut(s) 1018, 1409
TfiI GAWTC 6 cut(s) 297, 866, 1223, 1492, 1540, 1703
Tru1I TTAA 5 cut(s) 192, 474, 897, 1029, 1304
Tru9I TTAA 5 cut(s) 192, 474, 897, 1029, 1304
TscAI CASTG 2 cut(s) 955, 1165
TseFI GTSAC 2 cut(s) 1051, 1457
TseI GCWGC 6 cut(s) 305, 308, 763, 847, 1451, 1512
Tsp45I GTSAC 2 cut(s) 1051, 1457
TspDTI ATGAA 7 cut(s) 333, 440, 598, 879, 1038, 1093, 1107
TspRI CASTG 2 cut(s) 955, 1165
Van91I CCANNNNNTGG 1 cut(s) 1388
VneI GTGCAC 1 cut(s) 741
VspI ATTAAT 1 cut(s) 1304
XapI RAATTY 2 cut(s) 172, 1468
XceI RCATGY 1 cut(s) 335
XspI CTAG 7 cut(s) 41, 216, 663, 905, 1455, 1518, 1566
ZrmI AGTACT 1 cut(s) 1688
Zsp2I ATGCAT 2 cut(s) 499, 1576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.