Rmu_sc0039198.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039198.1
OG0000139
Physical Location & Seq
Reverse (-)
1141 .. 1764
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039198.1_g000001.1.cds

Sequence Viewer

Length: 624 bp
atggaagtacttgtgttttcagtgggagccaactgttggaaagttgttaaagctcctgacttgttgccatcccccatctggtctgcagcattggggacttattcaaatggagcaattcattgggccagttttcgcaatcctgagagtttcgagcgacctgtctatgcttttgatttggcaaatgagcagttccgggaaatgccattgcctgttcttagccacagcgaagatgacatgaacaggattcgaataacaactccagttctcgtaggaggatgtctttgtgtgatgtttcaggatcttaatgggtatagtgaattttgggcgatgaaagagtatggggtgcctgcatcttgggtcaaactctttcggttaaatgtacgtgatttactagatatgcttgctccattctttatccgccgttactggaatcctattttcattgcagaagacggtacagttttgacccaactgcataacaataaggaggtggtcaggattaaatgccgtaaagaagagaagccagtctgcaccgaccggtacagtcttgaggaggtgccagggtgtcattgttcatttgatgccattttgtatgatgaaactcttgttttggtacctgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

207

Amino Acids

23.79

Weight (kDa)

5.18

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 3 cut(s) 343, 556, 613
AccB7I CCANNNNNTGG 1 cut(s) 36
AciI CCGC 1 cut(s) 418
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 5 cut(s) 9, 381, 457, 542, 615
AfiI CCNNNNNNNGG 2 cut(s) 36, 78
AgeI ACCGGT 1 cut(s) 537
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 559
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 1 cut(s) 306
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 317
AsiGI ACCGGT 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 613
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 247
BanI GGYRCC 3 cut(s) 343, 556, 613
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 98
BccI CCATC 2 cut(s) 76, 83
BceAI ACGGC 2 cut(s) 405, 492
BciT130I CCWGG 1 cut(s) 561
BcnI CCSGG 1 cut(s) 194
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 194, 561
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 4 cut(s) 28, 345, 558, 615
BmrFI CCNGG 2 cut(s) 194, 561
BmsI GCATC 2 cut(s) 359, 571
BpiI GAAGAC 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 560
BsaWI WCCGGW 1 cut(s) 537
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 78
Bse118I RCCGGY 1 cut(s) 537
Bse1I ACTGG 4 cut(s) 126, 260, 431, 524
Bse3DI GCAATG 2 cut(s) 203, 441
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 560
BseGI GGATG 2 cut(s) 68, 281
BseLI CCNNNNNNNGG 2 cut(s) 36, 78
BseMI GCAATG 2 cut(s) 203, 441
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 4 cut(s) 126, 260, 431, 524
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 514
Bsh1285I CGRYCG 1 cut(s) 538
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 3 cut(s) 343, 556, 613
BshTI ACCGGT 1 cut(s) 537
BsiEI CGRYCG 1 cut(s) 538
BsiSI CCGG 2 cut(s) 193, 538
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 36, 78
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 247
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 1 cut(s) 418
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 4 cut(s) 28, 345, 558, 615
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 247
BspT107I GGYRCC 3 cut(s) 343, 556, 613
BsrDI GCAATG 2 cut(s) 203, 441
BsrFI RCCGGY 1 cut(s) 537
BsrI ACTGG 4 cut(s) 126, 260, 431, 524
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 4 cut(s) 35, 455, 460, 545
Bst6I CTCTTC 1 cut(s) 510
BstBAI YACGTR 1 cut(s) 383
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 348, 402
BstDEI CTNAG 2 cut(s) 141, 215
BstF5I GGATG 2 cut(s) 68, 281
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMCI CGRYCG 1 cut(s) 538
BstNI CCWGG 1 cut(s) 561
BstSCI CCNGG 2 cut(s) 192, 559
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 341
BtsCI GGATG 2 cut(s) 68, 281
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 348, 402
Cfr10I RCCGGY 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 5 cut(s) 8, 380, 456, 541, 614
CspAI ACCGGT 1 cut(s) 537
CviAII CATG 1 cut(s) 235
CviJI RGCY 5 cut(s) 29, 53, 125, 219, 523
CviKI_1 RGCY 5 cut(s) 29, 53, 125, 219, 523
CviQI GTAC 5 cut(s) 8, 380, 456, 541, 614
DdeI CTNAG 2 cut(s) 141, 215
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
EciI GGCGGA 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 559
FaeI CATG 1 cut(s) 238
FaiI YATR 7 cut(s) 165, 236, 312, 339, 398, 477, 594
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 2 cut(s) 55, 288
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 392
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 125
HapII CCGG 2 cut(s) 193, 538
Hin1II CATG 1 cut(s) 238
HinfI GANTC 2 cut(s) 244, 430
HpaII CCGG 2 cut(s) 193, 538
Hpy188III TCNNGA 5 cut(s) 56, 140, 296, 496, 548
HpyCH4III ACNGT 4 cut(s) 35, 455, 460, 545
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 5 cut(s) 86, 350, 446, 475, 531
HpyF3I CTNAG 2 cut(s) 141, 215
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 1 cut(s) 238
KpnI GGTACC 1 cut(s) 617
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 4 cut(s) 26, 58, 110, 409
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 2 cut(s) 359, 571
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 422
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 3 cut(s) 239, 461, 527
MflI RGATCY 1 cut(s) 298
MluCI AATT 2 cut(s) 114, 317
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 4 cut(s) 266, 481, 544, 547
MseI TTAA 4 cut(s) 48, 303, 374, 501
MspI CCGG 2 cut(s) 193, 538
MspR9I CCNGG 2 cut(s) 194, 561
MvaI CCWGG 1 cut(s) 561
NciI CCSGG 1 cut(s) 194
NdeII GATC 1 cut(s) 298
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 4 cut(s) 28, 345, 558, 615
NspV TTCGAA 1 cut(s) 247
PfeI GAWTC 2 cut(s) 244, 430
PflMI CCANNNNNTGG 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 537
PkrI GCNGC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 4 cut(s) 28, 345, 558, 615
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 5 cut(s) 9, 381, 457, 542, 615
RsaNI GTAC 5 cut(s) 8, 380, 456, 541, 614
SaqAI TTAA 4 cut(s) 48, 303, 374, 501
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 123
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 194, 561
SetI ASST 6 cut(s) 55, 160, 385, 492, 558, 619
SfaNI GCATC 2 cut(s) 359, 571
SfcI CTRYAG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 2 cut(s) 114, 317
SsiI CCGC 1 cut(s) 418
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 2 cut(s) 192, 559
TaaI ACNGT 4 cut(s) 35, 455, 460, 545
TaiI ACGT 1 cut(s) 385
TaqI TCGA 2 cut(s) 150, 247
TasI AATT 2 cut(s) 114, 317
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 2 cut(s) 244, 430
Tru1I TTAA 4 cut(s) 48, 303, 374, 501
Tru9I TTAA 4 cut(s) 48, 303, 374, 501
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 6 cut(s) 107, 251, 344, 430, 564, 612
TspRI CASTG 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.