Rroxscaffold_3G00233280

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000139
Physical Location & Seq
Forward (+)
19227430 .. 19228053
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233280.1

Sequence Viewer

Length: 624 bp
ATGGAAGTACAGGTGTTCTCAGTCAGAGCCAACTGTTGGAAAGTTATTAAAGCTCCTTACTTGTCGCCATACCGCCTCTGGTCTAAACAATGGGGGACTTATTCAAATGAAGCAATTCATTGGGTCAGTCGTCGTGAACCTGGGATTTTCGAGCCATCTGTCTATGCTTTTGATCTGGCTAATGAGGAGTTTCGGGAAATGCCATTGCCTGTTCTTAGCCACAATGAAGATAACATGAAAATGACGCAAGTAAGAACTCCGGTTCTTGTAGGAGGATGTCTTTGTGTGATGTTTCAGGATTTTGATGAGTGTTGTGAATTTTGGGTGATGAAAAAGTATGGGAAGCCTGAATCTTGGGTTAAACTCTTTCGGTTTAATGTATTTGATTTACCAGATGTGTTTGCTTCATTCTTTAGCTGCTATGACTGGGATCCAATTTTCATTGCAGAAGACGGTACACTTGTGATCAAATTGCGTATGAAAATGGAGTTGTTCAGGATTAAATGCCATAAAGAAGAGAAGCCAGTCTGCACCGACCAGTACAGTCTTGAGGAGGTGCCGGGGTGTAAGTGTTCATTTGAAGCCATTTTGTATGATGAAACTCTAGTTTCGGTGCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

207

Amino Acids

24.42

Weight (kDa)

5.05

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 556
AccB7I CCANNNNNTGG 1 cut(s) 36
AciI CCGC 1 cut(s) 73
AclWI GGATC 2 cut(s) 425, 438
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 3 cut(s) 9, 457, 542
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 3 cut(s) 105, 581, 620
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 53, 417
AluI AGCT 2 cut(s) 53, 417
AlwI GGATC 2 cut(s) 425, 438
ApeKI GCWGC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 1 cut(s) 337
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 556
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 404
BccI CCATC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 1 cut(s) 561
BfaI CTAG 1 cut(s) 605
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
Bme1390I CCNGG 2 cut(s) 141, 561
BmiI GGNNCC 2 cut(s) 432, 558
BmrFI CCNGG 2 cut(s) 141, 561
BmrI ACTGGG 1 cut(s) 436
BmuI ACTGGG 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 140, 560
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 3 cut(s) 431, 524, 538
Bse3DI GCAATG 2 cut(s) 203, 441
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 140, 560
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMI GCAATG 2 cut(s) 203, 441
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 3 cut(s) 431, 524, 538
BseRI GAGGAG 2 cut(s) 200, 566
BseXI GCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 514
BshNI GGYRCC 1 cut(s) 556
BsiSI CCGG 2 cut(s) 260, 560
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 109
Bsp143I GATC 3 cut(s) 172, 430, 465
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 432, 558
BspPI GGATC 2 cut(s) 425, 438
BspT107I GGYRCC 1 cut(s) 556
BsrDI GCAATG 2 cut(s) 203, 441
BsrI ACTGG 3 cut(s) 431, 524, 538
BssECI CCNNGG 2 cut(s) 140, 560
BssMI GATC 3 cut(s) 172, 430, 465
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 35, 455, 545
Bst6I CTCTTC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 19, 215
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 3 cut(s) 175, 433, 468
BstMBI GATC 3 cut(s) 172, 430, 465
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 139, 559
BstV1I GCAGC 1 cut(s) 404
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BtsCI GGATG 1 cut(s) 281
CseI GACGC 1 cut(s) 253
Csp6I GTAC 3 cut(s) 8, 456, 541
CviAII CATG 1 cut(s) 235
CviJI RGCY 9 cut(s) 29, 53, 154, 179, 219, 346, 417, 523, 584
CviKI_1 RGCY 9 cut(s) 29, 53, 154, 179, 219, 346, 417, 523, 584
CviQI GTAC 3 cut(s) 8, 456, 541
DdeI CTNAG 2 cut(s) 19, 215
DpnI GATC 3 cut(s) 174, 432, 467
DpnII GATC 3 cut(s) 172, 430, 465
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 238
FaiI YATR 8 cut(s) 70, 165, 236, 339, 423, 479, 510, 594
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 234
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 418
FspBI CTAG 1 cut(s) 605
GluI GCNGC 1 cut(s) 418
HapII CCGG 2 cut(s) 260, 560
HgaI GACGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 238
HinfI GANTC 1 cut(s) 350
HpaII CCGG 2 cut(s) 260, 560
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 137, 458
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 5 cut(s) 134, 194, 296, 496, 548
Hpy8I GTNNAC 2 cut(s) 137, 458
Hpy99I CGWCG 1 cut(s) 135
HpyCH4III ACNGT 3 cut(s) 35, 455, 545
HpyCH4V TGCA 2 cut(s) 446, 531
HpyF3I CTNAG 2 cut(s) 19, 215
Hsp92II CATG 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 172, 430, 465
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 1 cut(s) 404
MaeI CTAG 1 cut(s) 605
MalI GATC 3 cut(s) 174, 432, 467
MboI GATC 3 cut(s) 172, 430, 465
MboII GAAGA 3 cut(s) 239, 461, 527
MflI RGATCY 1 cut(s) 430
MluCI AATT 4 cut(s) 114, 317, 435, 470
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 5 cut(s) 86, 178, 266, 544, 547
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 4 cut(s) 48, 360, 375, 501
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 2 cut(s) 260, 560
MspR9I CCNGG 2 cut(s) 141, 561
MvaI CCWGG 1 cut(s) 141
NciI CCSGG 1 cut(s) 561
NdeII GATC 3 cut(s) 172, 430, 465
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 432, 558
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 432, 558
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 3 cut(s) 9, 457, 542
RsaNI GTAC 3 cut(s) 8, 456, 541
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 4 cut(s) 48, 360, 375, 501
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 3 cut(s) 172, 430, 465
ScrFI CCNGG 2 cut(s) 141, 561
SetI ASST 5 cut(s) 15, 55, 142, 419, 558
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 4 cut(s) 114, 317, 435, 470
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 2 cut(s) 139, 559
TaaI ACNGT 3 cut(s) 35, 455, 545
TaqI TCGA 1 cut(s) 150
TasI AATT 4 cut(s) 114, 317, 435, 470
TatI WGTACW 2 cut(s) 7, 540
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 4 cut(s) 48, 360, 375, 501
Tru9I TTAA 4 cut(s) 48, 360, 375, 501
TseI GCWGC 1 cut(s) 417
Van91I CCANNNNNTGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.