FvH4_3g42581

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000139
Physical Location & Seq
Forward (+)
35582572 .. 35582958
387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42581.t1

Sequence Viewer

Length: 387 bp
ATGCCGGAAGAGGAGGAGGTTTTCAATCTTGCTGAAGATCTTATAGTGAAGATTTTGTGCCGGTTACCAGTGAAATCTTTGATCCGGTTCAGTTGTGTTCGAAAAGGTGGCGTTCTATTATCATTCTTGACCCTCAGTTTGCCAAATCTCACCTCCAACATAGTCCTCGTCTCCACCATATCCCTCGTATATGGGGATACAGATTTATCTGAAAGATATCTTACCTTGACTGGGACTTCTCAGTTGCAATGCTTGGAAGACTTGTCTGGGGATACATTTCGGGTCAGAAATTGCACATTTCCATCCGAGCAGCACAGCACAATTGTAATGGATTCTTGCAATGGGTTTGTAATTCTAGGCAGTAATTATGAAGACTTGTCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

129

Amino Acids

14.23

Weight (kDa)

4.52

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 310
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 100
BbsI GAAGAC 2 cut(s) 264, 378
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 310
BciVI GTATCC 2 cut(s) 190, 265
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 356
BfuI GTATCC 2 cut(s) 190, 265
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
BmrI ACTGGG 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 264, 378
Bpu14I TTCGAA 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 68, 235
Bse3DI GCAATG 2 cut(s) 254, 346
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 2 cut(s) 254, 346
BseMII CTCAG 2 cut(s) 148, 254
BseNI ACTGG 2 cut(s) 68, 235
BseRI GAGGAG 2 cut(s) 26, 29
BseXI GCAGC 1 cut(s) 322
BsiSI CCGG 3 cut(s) 5, 61, 85
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 175
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 247
Bsp119I TTCGAA 1 cut(s) 100
Bsp143I GATC 2 cut(s) 37, 81
BspCNI CTCAG 2 cut(s) 147, 253
BspPI GGATC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 254, 346
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 2 cut(s) 68, 235
BssAI RCCGGY 1 cut(s) 60
BssMI GATC 2 cut(s) 37, 81
Bst6I CTCTTC 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 134, 240
BstEII GGTNACC 1 cut(s) 63
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 2 cut(s) 40, 84
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 37, 81
BstPI GGTNACC 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 2 cut(s) 264, 378
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 2 cut(s) 190, 265
BtsCI GGATG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 60
DdeI CTNAG 2 cut(s) 134, 240
DpnI GATC 2 cut(s) 39, 83
DpnII GATC 2 cut(s) 37, 81
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco32I GATATC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 54
Eco91I GGTNACC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 63
EcoRV GATATC 1 cut(s) 218
Esp3I CGTCTC 1 cut(s) 175
FaiI YATR 7 cut(s) 44, 161, 179, 190, 192, 369, 383
FaqI GGGAC 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 311
HapII CCGG 3 cut(s) 5, 61, 85
HinfI GANTC 1 cut(s) 332
HpaII CCGG 3 cut(s) 5, 61, 85
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 211, 287, 307
Hpy188III TCNNGA 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 247, 294, 339
HpyF3I CTNAG 2 cut(s) 134, 240
Kzo9I GATC 2 cut(s) 37, 81
LpnPI CCDG 6 cut(s) 18, 74, 81, 98, 216, 252
Lsp1109I GCAGC 1 cut(s) 322
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 63
MalI GATC 2 cut(s) 39, 83
MboI GATC 2 cut(s) 37, 81
MboII GAAGA 5 cut(s) 20, 47, 61, 269, 383
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 37
MluCI AATT 4 cut(s) 289, 321, 351, 364
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 7 cut(s) 4, 7, 10, 143, 163, 176, 194
MspI CCGG 3 cut(s) 5, 61, 85
MunI CAATTG 1 cut(s) 321
NdeII GATC 2 cut(s) 37, 81
NspV TTCGAA 1 cut(s) 100
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 312
PspEI GGTNACC 1 cut(s) 63
PsuI RGATCY 1 cut(s) 37
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 2 cut(s) 37, 81
SetI ASST 4 cut(s) 21, 109, 155, 227
SfuI TTCGAA 1 cut(s) 100
Sse9I AATT 4 cut(s) 289, 321, 351, 364
SspMI CTAG 1 cut(s) 356
TaqI TCGA 1 cut(s) 100
TasI AATT 4 cut(s) 289, 321, 351, 364
TfiI GAWTC 1 cut(s) 332
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 1 cut(s) 75
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.