Rorug01G0285800

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000139
Physical Location & Seq
Forward (+)
40044098 .. 40044747
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0285800.1

Sequence Viewer

Length: 540 bp
ATGTTACACCGTGGAGCATCTAAGAGTTTCCTAGCCGAATGTGAGGCATTGAGAAATATCAGACATCGAAATTTGGTCAAGATCTTAACTGCATGTTCAAGTATTGATTTCAGCGGCAATGATTTCAAGGCTCTTATTTACGAGTTCATGGACAACGGGAGCTTGGAGGAGTGGTTGCATCCATCTACTGGAACTGGAGAGGTAACAGAAGCTCCCAAGATTTTTAGTCTTATTCAGAGGCTCAACATGGCCATAGATGTTGCTAGTGCATTGGATTTTCTTCATAACCATTGTGAAACACCAATCGTTCATTGTGATCTCAAGCCAAGTAATATTCTTTTGGATAGTGACCTGACTGGACATGTTTCCGATTTTGGGCTGTCGAGGTTTCTCTCAGAACCAACCATGAGTGTTTCTGGAATTCAATCAAGCTCAATCGGACTTAGAGGATCGGTTGGTTATGCTGCACCAGAGTATGGTATGGGAAGTGAGGTGTCCACATACGGGGGGATGTCTACAGCTTTGGCATTCTCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

179

Amino Acids

19.35

Weight (kDa)

5.24

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 7 - 158 2.6e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 8 - 159 1.4e-21 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 188, 476
AccI GTMKAC 1 cut(s) 515
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 2 cut(s) 70, 420
AfiI CCNNNNNNNGG 4 cut(s) 188, 375, 476, 504
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 3 cut(s) 99, 127, 425
AluBI AGCT 4 cut(s) 162, 212, 432, 521
AluI AGCT 4 cut(s) 162, 212, 432, 521
AlwI GGATC 1 cut(s) 457
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 70, 420
BalI TGGCCA 1 cut(s) 251
BbvI GCAGC 1 cut(s) 451
BccI CCATC 1 cut(s) 190
BfaI CTAG 2 cut(s) 32, 264
BfmI CTRYAG 1 cut(s) 516
BglII AGATCT 1 cut(s) 81
BisI GCNGC 2 cut(s) 115, 465
BlsI GCNGC 2 cut(s) 116, 466
BmsI GCATC 2 cut(s) 26, 187
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 196, 226
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 375, 476, 504
Bse1I ACTGG 3 cut(s) 193, 199, 361
Bse3DI GCAATG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 178, 516
BseLI CCNNNNNNNGG 4 cut(s) 188, 375, 476, 504
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 3 cut(s) 193, 199, 361
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 1 cut(s) 251
BslI CCNNNNNNNGG 4 cut(s) 188, 375, 476, 504
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 1 cut(s) 251
Bsp143I GATC 3 cut(s) 81, 316, 449
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 407
BspPI GGATC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 3 cut(s) 193, 199, 361
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 81, 316, 449
Bst4CI ACNGT 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 21, 394, 443
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 2 cut(s) 178, 516
BstKTI GATC 3 cut(s) 84, 319, 452
BstMBI GATC 3 cut(s) 81, 316, 449
BstNSI RCATGY 2 cut(s) 96, 365
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 451
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 2 cut(s) 178, 516
CviAII CATG 5 cut(s) 93, 148, 247, 362, 406
DdeI CTNAG 3 cut(s) 21, 394, 443
DpnI GATC 3 cut(s) 83, 318, 451
DpnII GATC 3 cut(s) 81, 316, 449
EaeI YGGCCR 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 420
FaeI CATG 5 cut(s) 96, 151, 250, 365, 409
FatI CATG 5 cut(s) 92, 147, 246, 361, 405
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 2 cut(s) 115, 465
FokI GGATG 2 cut(s) 165, 523
Fsp4HI GCNGC 2 cut(s) 115, 465
FspBI CTAG 2 cut(s) 32, 264
GluI GCNGC 2 cut(s) 115, 465
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 5 cut(s) 96, 151, 250, 365, 409
Hpy166II GTNNAC 2 cut(s) 498, 516
Hpy188I TCNGA 5 cut(s) 62, 237, 370, 397, 440
Hpy188III TCNNGA 2 cut(s) 79, 417
Hpy8I GTNNAC 2 cut(s) 498, 516
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 92, 178, 269, 467
HpyF3I CTNAG 3 cut(s) 21, 394, 443
Hsp92II CATG 5 cut(s) 96, 151, 250, 365, 409
Kzo9I GATC 3 cut(s) 81, 316, 449
LmnI GCTCC 3 cut(s) 14, 159, 217
LpnPI CCDG 6 cut(s) 174, 180, 342, 365, 402, 483
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 2 cut(s) 26, 187
MaeI CTAG 2 cut(s) 32, 264
MaeIII GTNAC 3 cut(s) 3, 202, 347
MalI GATC 3 cut(s) 83, 318, 451
MboI GATC 3 cut(s) 81, 316, 449
MboII GAAGA 1 cut(s) 272
MflI RGATCY 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 2 cut(s) 70, 420
MluNI TGGCCA 1 cut(s) 251
MnlI CCTC 7 cut(s) 37, 160, 193, 231, 378, 440, 484
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
MseI TTAA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 527
NdeII GATC 3 cut(s) 81, 316, 449
NlaIII CATG 5 cut(s) 96, 151, 250, 365, 409
NmuCI GTSAC 1 cut(s) 347
NspI RCATGY 2 cut(s) 96, 365
PciI ACATGT 1 cut(s) 361
PctI GAATGC 1 cut(s) 527
PflMI CCANNNNNTGG 2 cut(s) 188, 476
PkrI GCNGC 2 cut(s) 116, 466
PscI ACATGT 1 cut(s) 361
PsuI RGATCY 1 cut(s) 81
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 115, 465
Sau3AI GATC 3 cut(s) 81, 316, 449
SetI ASST 8 cut(s) 164, 204, 214, 354, 389, 434, 495, 523
SfaNI GCATC 2 cut(s) 26, 187
SfcI CTRYAG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 70, 420
SsiI CCGC 1 cut(s) 114
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 32, 264
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 67, 383
TasI AATT 2 cut(s) 70, 420
TauI GCSGC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 136, 272, 299
Van91I CCANNNNNTGG 2 cut(s) 188, 476
XapI RAATTY 2 cut(s) 70, 420
XceI RCATGY 2 cut(s) 96, 365
XmiI GTMKAC 1 cut(s) 515
XspI CTAG 2 cut(s) 32, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.