Rorug01G0285900

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
40044750 .. 40045061
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0285900.1

Sequence Viewer

Length: 312 bp
ATGTTTACAGGGAAGAGACCCACTGATCAGATGTTCAGTGACAGCTTGAATCTTCATAATTATGTGAAGACAGCTCTCCCTGAACTTGTTTTTGAGATTTCAGAATCACTAGTTCTTCAAGAAGGCACCACCAATGTCGTTGAAGCTAACATGCACAACCAATTTAGTGTGAGAGCACGGAAAATTGAAGAGTGCTTGACTTTGATACTTGGTATAGGAATTGCATGTTCTGTTGAATCCCCCACAAACAGAAAGAATATCGGTGATGTTGCATCTGAATTGCAATCCATTAGGTGCAATCTTCTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.4

Weight (kDa)

5.28

Isoelectric Point (pI)

70.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AgsI TTSAA 5 cut(s) 49, 119, 143, 188, 236
AhlI ACTAGT 1 cut(s) 109
AluBI AGCT 3 cut(s) 45, 74, 146
AluI AGCT 3 cut(s) 45, 74, 146
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 178
BcgI CGANNNNNNTGC 1 cut(s) 286
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 10
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 2 cut(s) 110, 310
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 10
BssMI GATC 1 cut(s) 25
Bst6I CTCTTC 2 cut(s) 8, 183
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 154, 228
BstV2I GAAGAC 1 cut(s) 74
BtsIMutI CAGTG 2 cut(s) 21, 43
CviAII CATG 2 cut(s) 151, 225
CviJI RGCY 4 cut(s) 45, 74, 146, 309
CviKI_1 RGCY 4 cut(s) 45, 74, 146, 309
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 8, 183
EarI CTCTTC 2 cut(s) 8, 183
Eco31I GGTCTC 1 cut(s) 10
FaeI CATG 2 cut(s) 154, 228
FaiI YATR 5 cut(s) 57, 63, 152, 215, 226
FatI CATG 2 cut(s) 150, 224
FbaI TGATCA 1 cut(s) 25
FspBI CTAG 2 cut(s) 110, 310
Hin1II CATG 2 cut(s) 154, 228
HinfI GANTC 3 cut(s) 49, 104, 236
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 30, 103, 277
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 116
HpyCH4V TGCA 5 cut(s) 154, 224, 272, 283, 297
Hsp92II CATG 2 cut(s) 154, 228
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 93
LweI GCATC 1 cut(s) 281
MaeI CTAG 2 cut(s) 110, 310
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 6 cut(s) 25, 44, 79, 107, 200, 293
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 5 cut(s) 58, 161, 183, 219, 278
MslI CAYNNNNRTG 1 cut(s) 60
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 154, 228
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 2 cut(s) 154, 228
PfeI GAWTC 3 cut(s) 49, 104, 236
PspN4I GGNNCC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 60
Sau3AI GATC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 178
SetI ASST 4 cut(s) 47, 76, 148, 296
SfaNI GCATC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 60
SpeI ACTAGT 1 cut(s) 109
Sse9I AATT 5 cut(s) 58, 161, 183, 219, 278
SspMI CTAG 2 cut(s) 110, 310
TasI AATT 5 cut(s) 58, 161, 183, 219, 278
TfiI GAWTC 3 cut(s) 49, 104, 236
TscAI CASTG 2 cut(s) 28, 43
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 2 cut(s) 28, 43
XceI RCATGY 2 cut(s) 154, 228
XspI CTAG 2 cut(s) 110, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.