Rh5BG523100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000139
Physical Location & Seq
Forward (+)
82569696 .. 82570157
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG523100.1

Sequence Viewer

Length: 462 bp
ATGAAGTGTGAAATGATCACTGGAAAACATGGCTTTGGTTATGTCTCATCCACTGATGACTACATTGTTTTAGTAATTCCCGCTAGTTTCTCTCCAGTAGATGGGGATGTCAACATGTTCATCTTCTCAATGAGAGCTAACTCTTGGAAACTCAGTAAAGTCTCTGGCTGGTTTTCACTCAGCTACGGCCGGACAAGCCAGTCTGGGACTCTTTTAAATGAAGCAATCCATTGGGCTAACTATCACAGATATTATAGGGATGGCGGATTGATTGAACAAATGCAAATTTATGCTTTTGATTTGGCGAATGAGGAGTCACGGCAACTGCCCGTTCCTTGTTTTAACCAAGATGATAATGGAAACGGTGTAGAAATGCAGACTGTGGACCACTTAGGAGGCTGCCTTTGCGTATTGTCTTGGACTTGGCATCCTTTAGGGGAATGGATCACGATATTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

153

Amino Acids

17.34

Weight (kDa)

5.0

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 10 - 142 4.8e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 101
AciI CCGC 2 cut(s) 81, 264
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 2 cut(s) 275, 457
AluBI AGCT 2 cut(s) 137, 183
AluI AGCT 2 cut(s) 137, 183
Alw26I GTCTC 2 cut(s) 49, 166
AlwI GGATC 1 cut(s) 452
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 1 cut(s) 285
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspS9I GGNCC 1 cut(s) 385
AvaII GGWCC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 386
BccI CCATC 2 cut(s) 95, 254
BceAI ACGGC 2 cut(s) 202, 335
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 49, 166
BfaI CTAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 400
BlsI GCNGC 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmsI GCATC 1 cut(s) 436
BpmI CTGGAG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 3 cut(s) 25, 95, 199
BseGI GGATG 4 cut(s) 47, 112, 265, 427
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 2 cut(s) 166, 193
BseNI ACTGG 3 cut(s) 25, 95, 199
BseRI GAGGAG 1 cut(s) 326
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 1 cut(s) 189
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 49, 166
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 15, 444
BspACI CCGC 2 cut(s) 81, 264
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 165, 192
BspPI GGATC 1 cut(s) 452
BsrI ACTGG 3 cut(s) 25, 95, 199
BssMI GATC 2 cut(s) 15, 444
Bst4CI ACNGT 2 cut(s) 365, 382
BstDEI CTNAG 3 cut(s) 152, 179, 391
BstF5I GGATG 4 cut(s) 47, 112, 265, 427
BstKTI GATC 2 cut(s) 18, 447
BstMAI GTCTC 2 cut(s) 49, 166
BstMBI GATC 2 cut(s) 15, 444
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 195, 405
BstNSI RCATGY 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 386
BstZI CGGCCG 1 cut(s) 187
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 4 cut(s) 47, 112, 265, 427
BtsIMutI CAGTG 2 cut(s) 18, 51
Cfr13I GGNCC 1 cut(s) 385
CviAII CATG 2 cut(s) 29, 115
CviJI RGCY 8 cut(s) 33, 137, 168, 183, 189, 198, 236, 399
CviKI_1 RGCY 8 cut(s) 33, 137, 168, 183, 189, 198, 236, 399
DdeI CTNAG 3 cut(s) 152, 179, 391
DpnI GATC 2 cut(s) 17, 446
DpnII GATC 2 cut(s) 15, 444
DraI TTTAAA 1 cut(s) 216
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 187
EagI CGGCCG 1 cut(s) 187
EciI GGCGGA 1 cut(s) 279
EclXI CGGCCG 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 187
FaeI CATG 2 cut(s) 32, 118
FaiI YATR 5 cut(s) 30, 42, 116, 255, 291
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 28, 114
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 400
FokI GGATG 4 cut(s) 34, 119, 272, 414
Fsp4HI GCNGC 1 cut(s) 400
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 400
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 190
Hin1II CATG 2 cut(s) 32, 118
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 208, 314
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 112, 385
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 2 cut(s) 112, 385
HpyCH4III ACNGT 2 cut(s) 365, 382
HpyCH4V TGCA 2 cut(s) 283, 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 405
HpyF3I CTNAG 3 cut(s) 152, 179, 391
Hsp92II CATG 2 cut(s) 32, 118
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 2 cut(s) 15, 444
LpnPI CCDG 7 cut(s) 6, 108, 150, 154, 189, 203, 212
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 315
MalI GATC 2 cut(s) 17, 446
MboI GATC 2 cut(s) 15, 444
MboII GAAGA 1 cut(s) 115
MluCI AATT 3 cut(s) 75, 285, 457
MlyI GAGTC 2 cut(s) 202, 323
MnlI CCTC 2 cut(s) 304, 389
MseI TTAA 2 cut(s) 215, 342
MspI CCGG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 195, 405
NdeII GATC 2 cut(s) 15, 444
NlaIII CATG 2 cut(s) 32, 118
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 101
PkrI GCNGC 1 cut(s) 401
PleI GAGTC 2 cut(s) 202, 322
PpsI GAGTC 2 cut(s) 202, 322
PscI ACATGT 1 cut(s) 114
PspPI GGNCC 1 cut(s) 385
SaqAI TTAA 2 cut(s) 215, 342
SatI GCNGC 1 cut(s) 400
Sau3AI GATC 2 cut(s) 15, 444
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 2 cut(s) 202, 323
SetI ASST 2 cut(s) 139, 185
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 1 cut(s) 385
Sse9I AATT 3 cut(s) 75, 285, 457
SsiI CCGC 2 cut(s) 81, 264
SspMI CTAG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 365, 382
TasI AATT 3 cut(s) 75, 285, 457
Tru1I TTAA 2 cut(s) 215, 342
Tru9I TTAA 2 cut(s) 215, 342
TscAI CASTG 2 cut(s) 25, 58
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 1 cut(s) 399
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 3 cut(s) 17, 109, 234
TspRI CASTG 2 cut(s) 25, 58
Van91I CCANNNNNTGG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 285
XceI RCATGY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.