Rmu_sc0008955.1_g000006

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008955.1
OG0000139
Physical Location & Seq
Reverse (-)
12413 .. 12853
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008955.1_g000006.1.cds

Sequence Viewer

Length: 441 bp
atggcctggcttgattggcggacgggggactcttacaaattacaaatggagcacttcactggatcatccacagcagaaatgaggtttcgagctttatctatgcctttttatttggctgaggaggagttccggcaagtggcactacctgtttctatccaaaatgaagatggcgcgaatcaaaaagtgttgaggactctagttctttcaaatggatgcctttgcgtatggtttggagagcgtgatgggcatagtgaattttgggcattgacagagtatgcagtgaccaaatcttgggttaagctctttcaatttagtgtacacgatttacccgatgtctttgctttatgtagtacttgggatcctattttcgttacagaaggtgggacggttgtgatcaaaggtgttttaaaacgcgcgcgccaggcgcgcctcaatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

146

Amino Acids

16.7

Weight (kDa)

5.9

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AccII CGCG 5 cut(s) 173, 414, 416, 418, 427
AciI CCGC 1 cut(s) 19
AclWI GGATC 3 cut(s) 70, 353, 366
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 2 cut(s) 318, 352
AfiI CCNNNNNNNGG 2 cut(s) 136, 291
AgsI TTSAA 2 cut(s) 207, 308
AjnI CCWGG 2 cut(s) 5, 420
AluBI AGCT 2 cut(s) 92, 301
AluI AGCT 2 cut(s) 92, 301
Alw21I GWGCWC 1 cut(s) 54
AlwI GGATC 3 cut(s) 70, 353, 366
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 254
AscI GGCGCGCC 1 cut(s) 425
AspLEI GCGC 6 cut(s) 173, 416, 418, 420, 427, 429
BamHI GGATCC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 117
BccI CCATC 2 cut(s) 161, 236
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 2 cut(s) 7, 422
BclI TGATCA 1 cut(s) 393
BfaI CTAG 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 7, 422
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 7, 422
BmsI GCATC 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 291
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 2 cut(s) 7, 422
BseGI GGATG 2 cut(s) 65, 218
BseLI CCNNNNNNNGG 2 cut(s) 136, 291
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 64
BsePI GCGCGC 3 cut(s) 414, 416, 425
BseRI GAGGAG 2 cut(s) 134, 137
Bsh1236I CGCG 5 cut(s) 173, 414, 416, 418, 427
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 2 cut(s) 41, 397
BslI CCNNNNNNNGG 2 cut(s) 136, 291
BsmFI GGGAC 2 cut(s) 41, 397
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 54
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 3 cut(s) 62, 358, 393
BspACI CCGC 1 cut(s) 19
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 5 cut(s) 173, 414, 416, 418, 427
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 3 cut(s) 70, 353, 366
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 1 cut(s) 64
BssHII GCGCGC 3 cut(s) 414, 416, 425
BssMI GATC 3 cut(s) 62, 358, 393
Bst2UI CCWGG 2 cut(s) 7, 422
Bst4CI ACNGT 1 cut(s) 388
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 3 cut(s) 416, 418, 427
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 65, 218
BstFNI CGCG 5 cut(s) 173, 414, 416, 418, 427
BstHHI GCGC 6 cut(s) 173, 416, 418, 420, 427, 429
BstKTI GATC 3 cut(s) 65, 361, 396
BstMBI GATC 3 cut(s) 62, 358, 393
BstMWI GCNNNNNNNGC 5 cut(s) 16, 244, 422, 424, 426
BstNI CCWGG 2 cut(s) 7, 422
BstSCI CCNGG 2 cut(s) 5, 420
BstUI CGCG 5 cut(s) 173, 414, 416, 418, 427
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 65, 218
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 57, 285
Cac8I GCNNGC 3 cut(s) 416, 418, 427
CfoI GCGC 6 cut(s) 173, 416, 418, 420, 427, 429
Csp6I GTAC 2 cut(s) 317, 351
CviJI RGCY 5 cut(s) 5, 10, 92, 116, 301
CviKI_1 RGCY 5 cut(s) 5, 10, 92, 116, 301
CviQI GTAC 2 cut(s) 317, 351
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 64, 360, 395
DpnII GATC 3 cut(s) 62, 358, 393
DraI TTTAAA 1 cut(s) 408
EciI GGCGGA 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 5, 420
EcoT22I ATGCAT 1 cut(s) 439
FaiI YATR 6 cut(s) 101, 226, 249, 276, 346, 439
FaqI GGGAC 2 cut(s) 41, 397
FbaI TGATCA 1 cut(s) 393
FokI GGATG 2 cut(s) 52, 225
FspBI CTAG 1 cut(s) 197
GlaI GCGC 6 cut(s) 172, 415, 417, 419, 426, 428
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 130
HhaI GCGC 6 cut(s) 173, 416, 418, 420, 427, 429
Hin6I GCGC 6 cut(s) 171, 414, 416, 418, 425, 427
HinP1I GCGC 6 cut(s) 171, 414, 416, 418, 425, 427
HinfI GANTC 3 cut(s) 29, 175, 193
HpaII CCGG 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 317, 319
Hpy8I GTNNAC 2 cut(s) 317, 319
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 278, 437
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 244, 422, 424, 426
HpyF3I CTNAG 1 cut(s) 117
HspAI GCGC 6 cut(s) 171, 414, 416, 418, 425, 427
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 3 cut(s) 62, 358, 393
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 6 cut(s) 19, 45, 143, 159, 407, 434
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 280, 370
MalI GATC 3 cut(s) 64, 360, 395
MauBI CGCGCGCG 1 cut(s) 414
MboI GATC 3 cut(s) 62, 358, 393
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 3 cut(s) 38, 254, 308
MlyI GAGTC 2 cut(s) 23, 187
MnlI CCTC 5 cut(s) 75, 112, 115, 183, 440
Mph1103I ATGCAT 1 cut(s) 439
MseI TTAA 2 cut(s) 297, 407
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 2 cut(s) 7, 422
MvaI CCWGG 2 cut(s) 7, 422
MvnI CGCG 5 cut(s) 173, 414, 416, 418, 427
MwoI GCNNNNNNNGC 5 cut(s) 16, 244, 422, 424, 426
NdeII GATC 3 cut(s) 62, 358, 393
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 439
PalAI GGCGCGCC 1 cut(s) 425
PauI GCGCGC 3 cut(s) 414, 416, 425
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 291
PleI GAGTC 2 cut(s) 23, 187
PpsI GAGTC 2 cut(s) 23, 187
Psp6I CCWGG 2 cut(s) 5, 420
PspGI CCWGG 2 cut(s) 5, 420
PspN4I GGNNCC 1 cut(s) 360
PsuI RGATCY 1 cut(s) 358
PteI GCGCGC 3 cut(s) 414, 416, 425
RsaI GTAC 2 cut(s) 318, 352
RsaNI GTAC 2 cut(s) 317, 351
SaqAI TTAA 2 cut(s) 297, 407
Sau3AI GATC 3 cut(s) 62, 358, 393
ScaI AGTACT 1 cut(s) 352
SchI GAGTC 2 cut(s) 23, 187
ScrFI CCNGG 2 cut(s) 7, 422
SduI GDGCHC 1 cut(s) 54
SetI ASST 6 cut(s) 86, 94, 148, 303, 382, 403
SfaNI GCATC 1 cut(s) 203
SgsI GGCGCGCC 1 cut(s) 425
Sse9I AATT 3 cut(s) 38, 254, 308
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 5, 420
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 88
TasI AATT 3 cut(s) 38, 254, 308
TatI WGTACW 2 cut(s) 316, 350
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 297, 407
Tru9I TTAA 2 cut(s) 297, 407
TscAI CASTG 2 cut(s) 64, 285
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 64, 285
Van91I CCANNNNNTGG 1 cut(s) 291
XapI RAATTY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XspI CTAG 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 352
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.