Rroxscaffold_1G00005660

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000139
Physical Location & Seq
Forward (+)
7682037 .. 7683254
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005660.1

Sequence Viewer

Length: 1218 bp
ATGTCAATGTCGAAGATGAAAAATGAGAGCTTTGATCTACATGAAGATGTTATAGTGAAGATTCTGTGCCGGTTGCCGGTCAAGTCCTTGATCCGGTTCACTTGTGTGTCGAAACGGTGGCGTTCTATTATCATTTCTGATCCTCAATTTGGCAAGTCTCACCTTCAAGTAGCATCACAGCAGGGAACCCTCTGTCCAAAAGTCCTCATCTCCATCTACCCTACAATTGAAGCCATACAAGGTCAAATTCCCTATCCTTTTGAAGATGACACGCCTTGGTTACCCTCTCGATTTCAATCCTTAGAAGGTTATTCTTCAGTCAATAATCTCACCTTCCCATCAGAGGAGAAGAGCCAACGAGTAATGGCCTCGTGCAATGGTTTGGTACTTCTAGGTGAATCCTATAAAAGTTATTTTAGGAACTTGTCTATCTGGAATCCATCAACTGGATTTTTTCGCAAAATACCTAGTCCAAGTTTTGGGTTTGAGGTGACAAAATCAACAGAAAAGAAAAAGTATGGAAGCTTTTTATATTATGGTTTTGGTCAAGTGTCAGCCACTGACGACTACAAGCTTGTTTTCATAAAACTCGCCCTTGGTGATTTTGTGGATGTTCATGTCTTCTCACTCAGAGCCAACCTTTGGAAAGTTATTAAAGCTCCTTCCTCTTCATGCAGTGGCTGGATTGACGGACAGGGGAGTCTTTCAAATGGAGCGATTCATTGGATCAACTATCCCATATATGGGGTATCAGACCCAACTATGGTTGTGTTTGATTTGGCAGAGGAGGAGTTTAGGCAAGTGCCATTGCCTGTTTTCAACCAAAATGAAGATGGCGTGCATTTGAGACAGATAAGAATTCAGGTTCTTTTAGGAGGAGGTCTTTGTGTATGGTCTCAGGATCTTTATGAGCATAGTGAATTTTGGGTGATGAGAGAGTATGGTGTGCCTGAATCTTGGGTTAAACTCATTCAATTTAGTCGAGATGATTTGCCAGATGAGTTCACTTCATGCACTAGCTGGGATCCTACTTTTGTTTCAGAAGGTGGTACAATGTTGATCAAACTGCTTGACAAGAAGGAGTTGGTCTGGATTGAATGCCGTCAAGAAGAGAATCCGGTGTGCAGTGCCCAATATAGAATTGAAGAGTTTCCTGGGGCGATATTTGACGCGACTCTATATGATGAAACTTTAGTTTCACTACCTGAAGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

405

Amino Acids

46.14

Weight (kDa)

5.18

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 47 1.9e-09 F-box domain
FBA_3 PF08268 99 - 324 6.3e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 699
AccB7I CCANNNNNTGG 3 cut(s) 446, 479, 642
AccII CGCG 1 cut(s) 1172
AclWI GGATC 6 cut(s) 85, 134, 734, 909, 1019, 1032
AcsI RAATTY 3 cut(s) 246, 858, 920
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 2 cut(s) 387, 1051
AgsI TTSAA 9 cut(s) 167, 230, 263, 296, 708, 820, 974, 1097, 1145
AjnI CCWGG 1 cut(s) 1153
AleI CACNNNNGTG 1 cut(s) 104
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 5 cut(s) 30, 525, 574, 659, 1020
AluI AGCT 5 cut(s) 30, 525, 574, 659, 1020
Alw26I GTCTC 3 cut(s) 162, 841, 900
AlwI GGATC 6 cut(s) 85, 134, 734, 909, 1019, 1032
AlwNI CAGNNNCTG 2 cut(s) 560, 681
AoxI GGCC 1 cut(s) 366
ApoI RAATTY 3 cut(s) 246, 858, 920
Asp700I GAANNNNTTC 1 cut(s) 1149
AsuHPI GGTGA 6 cut(s) 152, 322, 407, 502, 611, 940
BaeGI GKGCMC 1 cut(s) 1132
BamHI GGATCC 1 cut(s) 1024
BauI CACGAG 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 613
BccI CCATC 4 cut(s) 221, 346, 448, 827
BceAI ACGGC 1 cut(s) 1086
BciT130I CCWGG 1 cut(s) 1155
BclI TGATCA 1 cut(s) 1059
BcoDI GTCTC 3 cut(s) 162, 841, 900
BfaI CTAG 3 cut(s) 392, 468, 1017
Bme1390I CCNGG 1 cut(s) 1155
BmiI GGNNCC 2 cut(s) 187, 1026
BmrFI CCNGG 1 cut(s) 1155
BmsI GCATC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 613
BsaBI GATNNNNATC 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 3 cut(s) 275, 595, 1154
BsaWI WCCGGW 2 cut(s) 93, 1117
Bse118I RCCGGY 2 cut(s) 69, 76
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 2 cut(s) 382, 806
Bse8I GATNNNNATC 1 cut(s) 295
BseBI CCWGG 1 cut(s) 1155
BseDI CCNNGG 3 cut(s) 275, 595, 1154
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 1 cut(s) 295
BseMI GCAATG 2 cut(s) 382, 806
BseMII CTCAG 2 cut(s) 643, 911
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 4 cut(s) 359, 800, 803, 891
BseSI GKGCMC 1 cut(s) 1132
BseYI CCCAGC 1 cut(s) 1020
BsgI GTGCAG 1 cut(s) 1144
Bsh1236I CGCG 1 cut(s) 1172
BshFI GGCC 1 cut(s) 368
BsiSI CCGG 4 cut(s) 70, 77, 94, 1118
BsmAI GTCTC 3 cut(s) 162, 841, 900
BsmI GAATGC 1 cut(s) 1103
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 900
Bsp1286I GDGCHC 1 cut(s) 1132
Bsp143I GATC 7 cut(s) 34, 90, 139, 726, 901, 1024, 1059
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 2 cut(s) 642, 910
BspFNI CGCG 1 cut(s) 1172
BspLI GGNNCC 2 cut(s) 187, 1026
BspPI GGATC 6 cut(s) 85, 134, 734, 909, 1019, 1032
BspQI GCTCTTC 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 900
BsrDI GCAATG 2 cut(s) 382, 806
BsrFI RCCGGY 2 cut(s) 69, 76
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 2 cut(s) 69, 76
BssECI CCNNGG 3 cut(s) 275, 595, 1154
BssMI GATC 7 cut(s) 34, 90, 139, 726, 901, 1024, 1059
BssSI CACGAG 1 cut(s) 370
BssT1I CCWWGG 2 cut(s) 275, 595
Bst2BI CACGAG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 1155
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 4 cut(s) 344, 673, 1104, 1140
BstC8I GCNNGC 1 cut(s) 839
BstDEI CTNAG 3 cut(s) 301, 629, 897
BstEII GGTNACC 1 cut(s) 279
BstF5I GGATG 1 cut(s) 616
BstFNI CGCG 1 cut(s) 1172
BstKTI GATC 7 cut(s) 37, 93, 142, 729, 904, 1027, 1062
BstMAI GTCTC 3 cut(s) 162, 841, 900
BstMBI GATC 7 cut(s) 34, 90, 139, 726, 901, 1024, 1059
BstNI CCWGG 1 cut(s) 1155
BstPI GGTNACC 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 1153
BstSLI GKGCMC 1 cut(s) 1132
BstUI CGCG 1 cut(s) 1172
BstV2I GAAGAC 1 cut(s) 613
BstX2I RGATCY 2 cut(s) 901, 1024
BstYI RGATCY 2 cut(s) 901, 1024
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 616
BtsI GCAGTG 2 cut(s) 682, 1132
BtsIMutI CAGTG 3 cut(s) 558, 682, 1132
Cac8I GCNNGC 1 cut(s) 839
CaiI CAGNNNCTG 2 cut(s) 560, 681
Cfr10I RCCGGY 2 cut(s) 69, 76
CseI GACGC 1 cut(s) 1178
Csp6I GTAC 2 cut(s) 386, 1050
CviAII CATG 4 cut(s) 41, 617, 672, 1011
CviQI GTAC 2 cut(s) 386, 1050
DdeI CTNAG 3 cut(s) 301, 629, 897
DpnI GATC 7 cut(s) 36, 92, 141, 728, 903, 1026, 1061
DpnII GATC 7 cut(s) 34, 90, 139, 726, 901, 1024, 1059
DrdI GACNNNNNNGTC 1 cut(s) 699
DseDI GACNNNNNNGTC 1 cut(s) 699
Eam1104I CTCTTC 4 cut(s) 344, 673, 1104, 1140
EarI CTCTTC 4 cut(s) 344, 673, 1104, 1140
Eco130I CCWWGG 2 cut(s) 275, 595
Eco31I GGTCTC 1 cut(s) 900
Eco57I CTGAAG 1 cut(s) 300
Eco91I GGTNACC 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 858
EcoRII CCWGG 1 cut(s) 1153
EcoT14I CCWWGG 2 cut(s) 275, 595
ErhI CCWWGG 2 cut(s) 275, 595
FaeI CATG 4 cut(s) 44, 620, 675, 1014
FatI CATG 4 cut(s) 40, 616, 671, 1010
FbaI TGATCA 1 cut(s) 1059
FokI GGATG 1 cut(s) 623
FspBI CTAG 3 cut(s) 392, 468, 1017
GsaI CCCAGC 1 cut(s) 1024
HaeIII GGCC 1 cut(s) 368
HapII CCGG 4 cut(s) 70, 77, 94, 1118
HgaI GACGC 1 cut(s) 1178
Hin1II CATG 4 cut(s) 44, 620, 675, 1014
HindIII AAGCTT 2 cut(s) 523, 572
HinfI GANTC 8 cut(s) 61, 398, 436, 700, 718, 953, 1114, 1174
HpaII CCGG 4 cut(s) 70, 77, 94, 1118
HphI GGTGA 6 cut(s) 152, 322, 407, 502, 611, 940
Hpy166II GTNNAC 2 cut(s) 99, 1005
Hpy188I TCNGA 5 cut(s) 139, 343, 632, 754, 1042
Hpy188III TCNNGA 6 cut(s) 288, 433, 899, 983, 1090, 1106
Hpy8I GTNNAC 2 cut(s) 99, 1005
HpyAV CCTTC 7 cut(s) 173, 299, 343, 672, 1037, 1072, 1202
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 5 cut(s) 375, 675, 841, 1014, 1125
HpyF3I CTNAG 3 cut(s) 301, 629, 897
Hsp92II CATG 4 cut(s) 44, 620, 675, 1014
Ksp22I TGATCA 1 cut(s) 1059
Kzo9I GATC 7 cut(s) 34, 90, 139, 726, 901, 1024, 1059
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 2 cut(s) 664, 713
LweI GCATC 1 cut(s) 182
MaeI CTAG 3 cut(s) 392, 468, 1017
MaeIII GTNAC 2 cut(s) 279, 490
MalI GATC 7 cut(s) 36, 92, 141, 728, 903, 1026, 1061
MboI GATC 7 cut(s) 34, 90, 139, 726, 901, 1024, 1059
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 2 cut(s) 901, 1024
MhlI GDGCHC 1 cut(s) 1132
MluCI AATT 7 cut(s) 146, 225, 246, 858, 920, 974, 1140
MlyI GAGTC 2 cut(s) 709, 1168
MroXI GAANNNNTTC 1 cut(s) 1149
MseI TTAA 2 cut(s) 654, 963
MslI CAYNNNNRTG 2 cut(s) 45, 104
MspI CCGG 4 cut(s) 70, 77, 94, 1118
MspR9I CCNGG 1 cut(s) 1155
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 1103
MvaI CCWGG 1 cut(s) 1155
MvnI CGCG 1 cut(s) 1172
NdeII GATC 7 cut(s) 34, 90, 139, 726, 901, 1024, 1059
NlaIII CATG 4 cut(s) 44, 620, 675, 1014
NlaIV GGNNCC 2 cut(s) 187, 1026
NmuCI GTSAC 1 cut(s) 490
OliI CACNNNNGTG 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 344
PctI GAATGC 1 cut(s) 1103
PdmI GAANNNNTTC 1 cut(s) 1149
PfeI GAWTC 6 cut(s) 61, 398, 436, 718, 953, 1114
PflMI CCANNNNNTGG 3 cut(s) 446, 479, 642
PleI GAGTC 2 cut(s) 708, 1168
PpsI GAGTC 2 cut(s) 708, 1168
Psp6I CCWGG 1 cut(s) 1153
PspEI GGTNACC 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 1020
PspGI CCWGG 1 cut(s) 1153
PspN4I GGNNCC 2 cut(s) 187, 1026
PstNI CAGNNNCTG 2 cut(s) 560, 681
PsuI RGATCY 2 cut(s) 901, 1024
RsaI GTAC 2 cut(s) 387, 1051
RsaNI GTAC 2 cut(s) 386, 1050
RseI CAYNNNNRTG 2 cut(s) 45, 104
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 654, 963
Sau3AI GATC 7 cut(s) 34, 90, 139, 726, 901, 1024, 1059
SchI GAGTC 2 cut(s) 709, 1168
ScrFI CCNGG 1 cut(s) 1155
SduI GDGCHC 1 cut(s) 1132
SfaNI GCATC 1 cut(s) 182
SmiMI CAYNNNNRTG 2 cut(s) 45, 104
Sse9I AATT 7 cut(s) 146, 225, 246, 858, 920, 974, 1140
SspMI CTAG 3 cut(s) 392, 468, 1017
StyD4I CCNGG 1 cut(s) 1153
StyI CCWWGG 2 cut(s) 275, 595
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 4 cut(s) 11, 110, 289, 982
TasI AATT 7 cut(s) 146, 225, 246, 858, 920, 974, 1140
TfiI GAWTC 6 cut(s) 61, 398, 436, 718, 953, 1114
Tru1I TTAA 2 cut(s) 654, 963
Tru9I TTAA 2 cut(s) 654, 963
TscAI CASTG 3 cut(s) 565, 682, 1132
TseFI GTSAC 1 cut(s) 490
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 9 cut(s) 32, 57, 571, 605, 660, 710, 843, 999, 1200
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 3 cut(s) 565, 682, 1132
Van91I CCANNNNNTGG 3 cut(s) 446, 479, 642
XapI RAATTY 3 cut(s) 246, 858, 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 1149
XspI CTAG 3 cut(s) 392, 468, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.