Rmu_sc0001470.1_g000003

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001470.1
OG0000139
Physical Location & Seq
Forward (+)
14948 .. 15325
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001470.1_g000003.1.cds

Sequence Viewer

Length: 378 bp
atgttgacgaggaaggggcaccttgatgtccacctccctgaacatgtcgtactcaacattctctgccggttgcctctcaagtccttgatccgcttcacttgtgtctctaaaagctggcgttctgttatcatttcctacccccaatttggcaactcccatttccaactagcagcatctcagctccgtcgaaatgtcctcatctccacctaccctatcttgatttcaaaaggtacactcggaacaacccatactatgttaccctctcgatttcactccttagacgataacttttcggtcaataatctcacctttccatccgagccgaatagcgatattgtagtaatggggtcctgtcatggtttggtaaccaagctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

125

Amino Acids

14.03

Weight (kDa)

9.73

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 82
AfaI GTAC 2 cut(s) 51, 232
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 225
AluBI AGCT 3 cut(s) 114, 181, 373
AluI AGCT 3 cut(s) 114, 181, 373
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 21
BanI GGYRCC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 2 cut(s) 20, 349
BmsI GCATC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 66
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 20, 349
BspPI GGATC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 66
BssMI GATC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 177, 277
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 47
BstPI GGTNACC 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 348
Csp6I GTAC 2 cut(s) 50, 231
CviAII CATG 2 cut(s) 44, 356
CviJI RGCY 4 cut(s) 114, 181, 322, 373
CviKI_1 RGCY 4 cut(s) 114, 181, 322, 373
CviQI GTAC 2 cut(s) 50, 231
DdeI CTNAG 2 cut(s) 177, 277
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 348
Eco91I GGTNACC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 348
EcoO65I GGTNACC 1 cut(s) 364
FaeI CATG 2 cut(s) 47, 359
FaiI YATR 4 cut(s) 45, 249, 254, 357
FatI CATG 2 cut(s) 43, 355
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 171
HapII CCGG 1 cut(s) 67
Hin1II CATG 2 cut(s) 47, 359
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 371
HpaII CCGG 1 cut(s) 67
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 6, 31, 233
Hpy188I TCNGA 2 cut(s) 239, 319
Hpy188III TCNNGA 2 cut(s) 217, 264
Hpy8I GTNNAC 3 cut(s) 6, 31, 233
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 7
HpyF3I CTNAG 2 cut(s) 177, 277
Hsp92II CATG 2 cut(s) 47, 359
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 51, 80, 100, 364
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 255, 364
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 5 cut(s) 3, 44, 84, 206, 271
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 67
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 47, 359
NlaIV GGNNCC 2 cut(s) 20, 349
NspI RCATGY 1 cut(s) 47
PciI ACATGT 1 cut(s) 43
PkrI GCNGC 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 348
PscI ACATGT 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 348
PspEI GGTNACC 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 20, 349
PspPI GGNCC 1 cut(s) 348
PspPPI RGGWCCY 1 cut(s) 348
PsrI GAACNNNNNNTAC 4 cut(s) 33, 65, 232, 264
RsaI GTAC 2 cut(s) 51, 232
RsaNI GTAC 2 cut(s) 50, 231
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 348
SduI GDGCHC 1 cut(s) 21
SetI ASST 8 cut(s) 24, 36, 116, 183, 209, 232, 311, 375
SfaNI GCATC 1 cut(s) 182
SinI GGWCC 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 143
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 167
TaqI TCGA 2 cut(s) 187, 265
TaqII GACCGA 1 cut(s) 283
TasI AATT 1 cut(s) 143
TseI GCWGC 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 348
XceI RCATGY 1 cut(s) 47
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.