Rmu_co8225880.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8225880.1
OG0000139
Physical Location & Seq
Reverse (-)
2 .. 405
404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8225880.1_g000001.1.cds

Sequence Viewer

Length: 404 bp
atgtcgaagaagaaggagcaccttgagctccacctccctgaagatatactagtcaagattttgtgtcggttgccagtaaaatccctgatgcggctcacttttgtatcaaaacaatggcgttccattatccttcatgatcccaaattttcgaaatcccaactccaactagcatctcagcaccaaaccctccgtcaaagagtccttatttactaccctttactcccaactcctgccgaattatccaaactcggcgcccatgacattccaaagttaccttctcgatttcagtctttagaagataacttttcaggccaaattctcaacttcccaggggaggaaaataggcacatagtattaatcggttcctgtaatggtttactagctctagcggaagactgttgggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

135

Amino Acids

15.48

Weight (kDa)

9.1

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AciI CCGC 2 cut(s) 91, 389
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 2 cut(s) 143, 315
AcuI CTGAAG 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 90, 334
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 259, 291
AluBI AGCT 2 cut(s) 28, 383
AluI AGCT 2 cut(s) 28, 383
Alw21I GWGCWC 2 cut(s) 21, 30
AlwI GGATC 1 cut(s) 131
AoxI GGCC 1 cut(s) 310
ApoI RAATTY 2 cut(s) 143, 315
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
AseI ATTAAT 1 cut(s) 356
AspLEI GCGC 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 149
BaeI ACNNNNGTAYC 2 cut(s) 87, 120
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 21, 30
BciT130I CCWGG 1 cut(s) 330
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 4 cut(s) 50, 167, 380, 386
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 253, 364
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 2 cut(s) 78, 179
BpiI GAAGAC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 328, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 334
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 328, 329
BseLI CCNNNNNNNGG 2 cut(s) 90, 334
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 74
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 21, 30
BslI CCNNNNNNNGG 2 cut(s) 90, 334
BsnI GGCC 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 21, 30
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 2 cut(s) 91, 389
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 253, 364
BspPI GGATC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 328, 329
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 398
BstACI GRCGYC 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 312
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 254
CviAII CATG 2 cut(s) 134, 257
CviJI RGCY 4 cut(s) 28, 94, 312, 383
CviKI_1 RGCY 4 cut(s) 28, 94, 312, 383
DdeI CTNAG 1 cut(s) 174
DinI GGCGCC 1 cut(s) 253
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 30
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
FaeI CATG 2 cut(s) 137, 260
FaiI YATR 4 cut(s) 47, 135, 258, 350
FatI CATG 2 cut(s) 133, 256
Fnu4HI GCNGC 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 4 cut(s) 50, 167, 380, 386
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 1 cut(s) 312
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 2 cut(s) 137, 260
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 377
Hpy188III TCNNGA 3 cut(s) 55, 134, 279
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 7, 140, 285
HpyCH4III ACNGT 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 137, 260
HspAI GCGC 1 cut(s) 252
KasI GGCGCC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 16, 33
LpnPI CCDG 8 cut(s) 51, 87, 98, 243, 294, 315, 342, 379
LweI GCATC 2 cut(s) 78, 179
MaeI CTAG 4 cut(s) 50, 167, 380, 386
MaeIII GTNAC 1 cut(s) 270
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 5 cut(s) 19, 22, 53, 308, 404
MhlI GDGCHC 2 cut(s) 21, 30
MluCI AATT 3 cut(s) 143, 236, 315
Mly113I GGCGCC 1 cut(s) 252
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 3 cut(s) 44, 197, 328
MseI TTAA 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 25
NarI GGCGCC 1 cut(s) 252
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 137, 260
NlaIV GGNNCC 2 cut(s) 253, 364
NmeAIII GCCGAG 1 cut(s) 228
NspV TTCGAA 1 cut(s) 149
PagI TCATGA 1 cut(s) 133
PasI CCCWGGG 1 cut(s) 329
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 206
PluTI GGCGCC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 206
PshBI ATTAAT 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 253, 364
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 2 cut(s) 21, 30
SetI ASST 5 cut(s) 24, 30, 36, 277, 385
SfaNI GCATC 2 cut(s) 78, 179
SfoI GGCGCC 1 cut(s) 253
SfuI TTCGAA 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 3 cut(s) 143, 236, 315
SsiI CCGC 2 cut(s) 91, 389
SspDI GGCGCC 1 cut(s) 251
SspMI CTAG 4 cut(s) 50, 167, 380, 386
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 5, 149, 280
TasI AATT 3 cut(s) 143, 236, 315
TauI GCSGC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 179
VspI ATTAAT 1 cut(s) 356
XapI RAATTY 2 cut(s) 143, 315
XspI CTAG 4 cut(s) 50, 167, 380, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.