Rh5BG522700

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000139
Physical Location & Seq
Reverse (-)
82510343 .. 82511038
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG522700.1

Sequence Viewer

Length: 696 bp
ATGGACGGAAATGAAAACTGCGCATTCTATATAAATCATGGGTTTGGTCATGTGTTTGCCACTGATGACTATAAACTTGTTTGTGTTTTAGCCTCCATTGGAGGTCTTGCAGGACTCCATGTCTTCTCAGTGAGGGACAACTTTTGGAAAGTTAGAGCTGCTAACTTGCCATTGCCAGGCTTGCATGGTGGACCGGGGACTCTTTCAAATGAAGCACTTCACTGGATCAGCTACCCTGAAAATGAGCTTTTGAGCTCTATCTATGCTTTTGATTTGGCTGAGGAGGAGTTCCGGCAAGTGTCACTGCCAGTTTTTACCCAAATAGAAGATACCGTGAATGGGTTAAAGTCTCTGATTCTTTTAAATGGATGCCTTTGCGTATGGTTTGTGGATAGTAATTGGCATTATAACTTTTGGGCAATGACAGAGTACGCGGTGACCAAGTCTTGGGTTAAGCTCTTTCAATTTAGTGTACACGATTTACCGGATGTCCTTACTTCATATGGTATTTGGGATCCCATTTTCATCACAGAAGGCGGTACGGTTGTGATCAAACTGGATAACAAGGAGGAGTTGGTCAAGATTGAGTTGCGGAAAGAAGAGAAGCCATTCTGCAGTGGACGGTATAGGCTTGGGTGTAAGCTTCATTTTGACACTGCTGTATATGATGAAACTCTGGTTTCGGTACCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

231

Amino Acids

26.14

Weight (kDa)

5.01

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
Acc16I TGCGCA 1 cut(s) 22
Acc65I GGTACC 1 cut(s) 685
AccB1I GGYRCC 1 cut(s) 685
AccB7I CCANNNNNTGG 1 cut(s) 447
AccII CGCG 1 cut(s) 434
AciI CCGC 3 cut(s) 434, 537, 592
AclWI GGATC 3 cut(s) 233, 509, 522
AfaI GTAC 4 cut(s) 431, 474, 541, 687
AfiI CCNNNNNNNGG 3 cut(s) 176, 339, 447
AgsI TTSAA 2 cut(s) 207, 464
AhdI GACNNNNNGTC 1 cut(s) 119
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 6 cut(s) 158, 231, 247, 255, 457, 643
AluI AGCT 6 cut(s) 158, 231, 247, 255, 457, 643
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 354
AlwI GGATC 3 cut(s) 233, 509, 522
ApeKI GCWGC 1 cut(s) 158
Asp700I GAANNNNTTC 2 cut(s) 216, 608
Asp718I GGTACC 1 cut(s) 685
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 448
AvaII GGWCC 1 cut(s) 191
BaeI ACNNNNGTAYC 2 cut(s) 531, 564
BamHI GGATCC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 685
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 257
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 613
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 177, 195
Bme18I GGWCC 1 cut(s) 191
BmeRI GACNNNNNGTC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 516, 687
BmrFI CCNGG 2 cut(s) 177, 195
BmsI GCATC 1 cut(s) 359
BpiI GAAGAC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 339, 447
Bse1I ACTGG 3 cut(s) 227, 308, 561
Bse3DI GCAATG 2 cut(s) 170, 426
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 374, 493
BseLI CCNNNNNNNGG 3 cut(s) 176, 339, 447
BseMI GCAATG 2 cut(s) 170, 426
BseMII CTCAG 2 cut(s) 141, 270
BseNI ACTGG 3 cut(s) 227, 308, 561
BseRI GAGGAG 3 cut(s) 296, 299, 584
BseXI GCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 434
BshNI GGYRCC 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 3 cut(s) 194, 292, 485
BslFI GGGAC 2 cut(s) 149, 211
BslI CCNNNNNNNGG 3 cut(s) 176, 339, 447
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 2 cut(s) 149, 211
BsmI GAATGC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 3 cut(s) 225, 514, 549
BspACI CCGC 3 cut(s) 434, 537, 592
BspCNI CTCAG 2 cut(s) 140, 271
BspFNI CGCG 1 cut(s) 434
BspHI TCATGA 1 cut(s) 692
BspLI GGNNCC 2 cut(s) 516, 687
BspMAI CTGCAG 1 cut(s) 617
BspPI GGATC 3 cut(s) 233, 509, 522
BspT107I GGYRCC 1 cut(s) 685
BsrDI GCAATG 2 cut(s) 170, 426
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 3 cut(s) 227, 308, 561
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 225, 514, 549
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 3 cut(s) 334, 544, 624
Bst6I CTCTTC 1 cut(s) 594
BstAUI TGTACA 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 127, 279
BstEII GGTNACC 1 cut(s) 436
BstF5I GGATG 2 cut(s) 374, 493
BstFNI CGCG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 228, 517, 552
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 3 cut(s) 225, 514, 549
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 177
BstPI GGTNACC 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 175, 193
BstSFI CTRYAG 1 cut(s) 613
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BtsCI GGATG 2 cut(s) 374, 493
BtsI GCAGTG 3 cut(s) 302, 622, 654
BtsIMutI CAGTG 6 cut(s) 60, 135, 220, 302, 622, 654
Cac8I GCNNGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 692
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 4 cut(s) 430, 473, 540, 686
CviAII CATG 5 cut(s) 38, 50, 119, 185, 693
CviQI GTAC 4 cut(s) 430, 473, 540, 686
DdeI CTNAG 2 cut(s) 127, 279
DpnI GATC 3 cut(s) 227, 516, 551
DpnII GATC 3 cut(s) 225, 514, 549
DraI TTTAAA 1 cut(s) 363
DriI GACNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 594
Eam1105I GACNNNNNGTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 255
Eco91I GGTNACC 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 255
EcoO65I GGTNACC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 257
FaeI CATG 5 cut(s) 41, 53, 122, 188, 696
FaqI GGGAC 2 cut(s) 149, 211
FatI CATG 5 cut(s) 37, 49, 118, 184, 692
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 2 cut(s) 381, 500
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 159
FspI TGCGCA 1 cut(s) 22
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 159
HapII CCGG 3 cut(s) 194, 292, 485
HhaI GCGC 1 cut(s) 23
Hin1II CATG 5 cut(s) 41, 53, 122, 188, 696
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 3 cut(s) 114, 199, 355
HpaII CCGG 3 cut(s) 194, 292, 485
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 4 cut(s) 191, 473, 475, 620
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 2 cut(s) 580, 693
Hpy8I GTNNAC 4 cut(s) 191, 473, 475, 620
HpyAV CCTTC 1 cut(s) 527
HpyCH4III ACNGT 3 cut(s) 334, 544, 624
HpyCH4V TGCA 3 cut(s) 110, 184, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 127, 279
Hsp92II CATG 5 cut(s) 41, 53, 122, 188, 696
HspAI GCGC 1 cut(s) 21
KpnI GGTACC 1 cut(s) 689
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 3 cut(s) 225, 514, 549
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 359
MaeIII GTNAC 2 cut(s) 300, 436
MalI GATC 3 cut(s) 227, 516, 551
MboI GATC 3 cut(s) 225, 514, 549
MboII GAAGA 3 cut(s) 115, 338, 611
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 2 cut(s) 397, 464
MlyI GAGTC 2 cut(s) 108, 193
MnlI CCTC 6 cut(s) 95, 103, 126, 274, 277, 562
MroXI GAANNNNTTC 2 cut(s) 216, 608
MseI TTAA 3 cut(s) 344, 362, 453
MspI CCGG 3 cut(s) 194, 292, 485
MspR9I CCNGG 2 cut(s) 177, 195
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 181
NciI CCSGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 502
NdeII GATC 3 cut(s) 225, 514, 549
NlaIII CATG 5 cut(s) 41, 53, 122, 188, 696
NlaIV GGNNCC 2 cut(s) 516, 687
NmuCI GTSAC 2 cut(s) 300, 436
NsbI TGCGCA 1 cut(s) 22
PagI TCATGA 1 cut(s) 692
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 2 cut(s) 216, 608
PfeI GAWTC 1 cut(s) 355
PflFI GACNNNGTC 1 cut(s) 442
PflMI CCANNNNNTGG 1 cut(s) 447
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 2 cut(s) 108, 193
PpsI GAGTC 2 cut(s) 108, 193
PsiI TTATAA 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 175
PspEI GGTNACC 1 cut(s) 436
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 516, 687
PspPI GGNCC 1 cut(s) 191
PstI CTGCAG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 514
PsyI GACNNNGTC 1 cut(s) 442
RsaI GTAC 4 cut(s) 431, 474, 541, 687
RsaNI GTAC 4 cut(s) 430, 473, 540, 686
SacI GAGCTC 1 cut(s) 257
SaqAI TTAA 3 cut(s) 344, 362, 453
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 3 cut(s) 225, 514, 549
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 108, 193
ScrFI CCNGG 2 cut(s) 177, 195
SduI GDGCHC 1 cut(s) 257
SetI ASST 8 cut(s) 106, 160, 233, 249, 257, 459, 645, 691
SfaNI GCATC 1 cut(s) 359
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 1 cut(s) 191
Sse9I AATT 2 cut(s) 397, 464
SsiI CCGC 3 cut(s) 434, 537, 592
SstI GAGCTC 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 175, 193
TaaI ACNGT 3 cut(s) 334, 544, 624
TasI AATT 2 cut(s) 397, 464
TatI WGTACW 1 cut(s) 472
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 3 cut(s) 344, 362, 453
Tru9I TTAA 3 cut(s) 344, 362, 453
TscAI CASTG 6 cut(s) 67, 135, 227, 309, 622, 661
TseFI GTSAC 2 cut(s) 300, 436
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 2 cut(s) 300, 436
TspDTI ATGAA 7 cut(s) 27, 225, 489, 514, 635, 681, 684
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 6 cut(s) 67, 135, 227, 309, 622, 661
Tth111I GACNNNGTC 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 191
XmnI GAANNNNTTC 2 cut(s) 216, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.