Rw0G011310

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00494
OG0000139
Physical Location & Seq
Forward (+)
35835 .. 36699
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011310.1

Sequence Viewer

Length: 834 bp
ATGTTGACGAAGGAGGAGCAGCTTGATAATGATGTCCACCTCCCTGAACATGTTGTACTCAACATTCTCTGCCGGTTGCCATTCAAGTCCTTGATCCGCTTCACTTGTGTCTCTAAACGCTGGCGTTCTCTTATCATTTCTGATCCCCAATTTGCCAACTCCCATTTCCGACTAGCAGCATCTCAGCTCCGTCGAAATGTCCTCATCTCCACCCACCCTATCTTGATTTCAAAAGGTACACTCGGAACAACCCATACTATGTTACCCTCTCGATTTCACTCCTTAGACGATAACTTTTCGGTCAGAAGTCTCACCTTCCCATCCGAGCCGAATCGCGACATTGTAGTAATGGGCTCCTGCAATGGTTTGGTGGTTTTAGGCAAGTTCTATCGCCATGCTTTGGTACCTCTAGGCCAATTATATTGTGATTATTATAAAACTTTGGGAATCTGGAACCCATCCACTGGATTCTTCCGCAACATACCTAGTCCAAGTTTTCAGATTGGGATGATACAATTGACGGATGAAAAGAAAGAAAGGCACATGAGCTGTGTATATTATGGTTTTGGTCAAGTGTCGGCCTCCGGTGACTACAAATTTGTAGTGATACCAAACTTTGGTGGTTTTATGGAAGTACAGGTGTTCTCACTCCTTACTTGTCACCATACCGCGTCTGGTCTAAACAATGGGGGACTTATTCAAATGGAGCAGTTCATTGGGTCAGTCATTGCGAACCTGGGATTTTCGAGCCATCTGTCTATGCTTTTGATCTGGCTAATGAGGAGTTTCGGGAAATGCCATTGCCTGTTCTTAGCCACAGTGAAGATTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

277

Amino Acids

31.25

Weight (kDa)

9.16

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 48 2.7e-11 F-box domain
F-box-like PF12937 13 - 48 3.9e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
Acc65I GGTACC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 403
AccB7I CCANNNNNTGG 3 cut(s) 400, 464, 617
AccII CGCG 2 cut(s) 336, 671
AciI CCGC 3 cut(s) 97, 475, 669
AclWI GGATC 2 cut(s) 88, 137
AcsI RAATTY 1 cut(s) 596
AfaI GTAC 4 cut(s) 57, 238, 405, 636
AfiI CCNNNNNNNGG 3 cut(s) 400, 464, 617
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 3 cut(s) 85, 231, 701
AjnI CCWGG 1 cut(s) 735
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 22, 187, 549
AluI AGCT 3 cut(s) 22, 187, 549
Alw26I GTCTC 2 cut(s) 115, 314
AlwI GGATC 2 cut(s) 88, 137
AoxI GGCC 2 cut(s) 412, 579
ApeKI GCWGC 2 cut(s) 19, 176
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
Asp718I GGTACC 1 cut(s) 403
AsuHPI GGTGA 3 cut(s) 304, 599, 653
BanI GGYRCC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 356
BbvI GCAGC 2 cut(s) 31, 188
BccI CCATC 3 cut(s) 328, 466, 759
BciT130I CCWGG 1 cut(s) 737
BcoDI GTCTC 2 cut(s) 115, 314
BfaI CTAG 3 cut(s) 173, 410, 486
BisI GCNGC 2 cut(s) 20, 177
BlsI GCNGC 2 cut(s) 21, 178
Bme1390I CCNGG 1 cut(s) 737
BmiI GGNNCC 3 cut(s) 355, 405, 455
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 736
BsaWI WCCGGW 1 cut(s) 584
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 464, 617
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 3 cut(s) 367, 726, 799
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 1 cut(s) 736
BseGI GGATG 4 cut(s) 320, 458, 513, 529
BseLI CCNNNNNNNGG 3 cut(s) 400, 464, 617
BseMI GCAATG 3 cut(s) 367, 726, 799
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 2 cut(s) 29, 796
BseXI GCAGC 2 cut(s) 31, 188
Bsh1236I CGCG 2 cut(s) 336, 671
BshFI GGCC 2 cut(s) 414, 581
BshNI GGYRCC 1 cut(s) 403
BsiSI CCGG 2 cut(s) 73, 585
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 3 cut(s) 400, 464, 617
BsmAI GTCTC 2 cut(s) 115, 314
BsmFI GGGAC 1 cut(s) 705
BsnI GGCC 2 cut(s) 414, 581
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 3 cut(s) 93, 142, 768
Bsp68I TCGCGA 1 cut(s) 336
BspACI CCGC 3 cut(s) 97, 475, 669
BspANI GGCC 2 cut(s) 414, 581
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 2 cut(s) 336, 671
BspLI GGNNCC 3 cut(s) 355, 405, 455
BspPI GGATC 2 cut(s) 88, 137
BspT107I GGYRCC 1 cut(s) 403
BsrDI GCAATG 3 cut(s) 367, 726, 799
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 3 cut(s) 93, 142, 768
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 1 cut(s) 820
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 183, 283, 811
BstF5I GGATG 4 cut(s) 320, 458, 513, 529
BstFNI CGCG 2 cut(s) 336, 671
BstKTI GATC 3 cut(s) 96, 145, 771
BstMAI GTCTC 2 cut(s) 115, 314
BstMBI GATC 3 cut(s) 93, 142, 768
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 735
BstUI CGCG 2 cut(s) 336, 671
BstV1I GCAGC 2 cut(s) 31, 188
BsuRI GGCC 2 cut(s) 414, 581
BtsCI GGATG 4 cut(s) 320, 458, 513, 529
BtsIMutI CAGTG 2 cut(s) 462, 825
BtuMI TCGCGA 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 72
CseI GACGC 1 cut(s) 660
Csp6I GTAC 4 cut(s) 56, 237, 404, 635
CviAII CATG 4 cut(s) 50, 395, 544, 831
CviQI GTAC 4 cut(s) 56, 237, 404, 635
DdeI CTNAG 3 cut(s) 183, 283, 811
DpnI GATC 3 cut(s) 95, 144, 770
DpnII GATC 3 cut(s) 93, 142, 768
Eco24I GRGCYC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 4 cut(s) 53, 398, 547, 834
FaqI GGGAC 1 cut(s) 705
FatI CATG 4 cut(s) 49, 394, 543, 830
Fnu4HI GCNGC 2 cut(s) 20, 177
FokI GGATG 4 cut(s) 307, 445, 520, 536
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 20, 177
FspBI CTAG 3 cut(s) 173, 410, 486
GluI GCNGC 2 cut(s) 20, 177
HaeIII GGCC 2 cut(s) 414, 581
HapII CCGG 2 cut(s) 73, 585
HgaI GACGC 1 cut(s) 660
Hin1II CATG 4 cut(s) 53, 398, 547, 834
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 331, 447, 468
HpaII CCGG 2 cut(s) 73, 585
HphI GGTGA 3 cut(s) 304, 599, 653
Hpy166II GTNNAC 3 cut(s) 6, 37, 239
Hpy188I TCNGA 6 cut(s) 142, 170, 245, 305, 325, 501
Hpy188III TCNNGA 5 cut(s) 223, 270, 335, 451, 790
Hpy8I GTNNAC 3 cut(s) 6, 37, 239
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 4, 325
HpyCH4III ACNGT 1 cut(s) 820
HpyCH4V TGCA 1 cut(s) 360
HpyF3I CTNAG 3 cut(s) 183, 283, 811
Hsp92II CATG 4 cut(s) 53, 398, 547, 834
KpnI GGTACC 1 cut(s) 407
Kzo9I GATC 3 cut(s) 93, 142, 768
LmnI GCTCC 4 cut(s) 16, 192, 359, 706
Lsp1109I GCAGC 2 cut(s) 31, 188
LweI GCATC 1 cut(s) 188
MaeI CTAG 3 cut(s) 173, 410, 486
MaeIII GTNAC 3 cut(s) 261, 587, 659
MalI GATC 3 cut(s) 95, 144, 770
MboI GATC 3 cut(s) 93, 142, 768
MboII GAAGA 1 cut(s) 463
MfeI CAATTG 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 4 cut(s) 149, 416, 515, 596
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 7 cut(s) 7, 50, 212, 277, 417, 592, 774
MspI CCGG 2 cut(s) 73, 585
MspR9I CCNGG 1 cut(s) 737
MunI CAATTG 1 cut(s) 515
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 2 cut(s) 336, 671
NdeII GATC 3 cut(s) 93, 142, 768
NlaIII CATG 4 cut(s) 53, 398, 547, 834
NlaIV GGNNCC 3 cut(s) 355, 405, 455
NmuCI GTSAC 2 cut(s) 587, 659
NruI TCGCGA 1 cut(s) 336
NspI RCATGY 1 cut(s) 53
PciI ACATGT 1 cut(s) 49
PfeI GAWTC 3 cut(s) 331, 447, 468
PflMI CCANNNNNTGG 3 cut(s) 400, 464, 617
PkrI GCNGC 2 cut(s) 21, 178
PscI ACATGT 1 cut(s) 49
PsiI TTATAA 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 735
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 3 cut(s) 355, 405, 455
PsrI GAACNNNNNNTAC 4 cut(s) 39, 71, 238, 270
RruI TCGCGA 1 cut(s) 336
RsaI GTAC 4 cut(s) 57, 238, 405, 636
RsaNI GTAC 4 cut(s) 56, 237, 404, 635
SatI GCNGC 2 cut(s) 20, 177
Sau3AI GATC 3 cut(s) 93, 142, 768
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 1 cut(s) 356
SfaNI GCATC 1 cut(s) 188
Sse9I AATT 4 cut(s) 149, 416, 515, 596
SsiI CCGC 3 cut(s) 97, 475, 669
SspMI CTAG 3 cut(s) 173, 410, 486
StyD4I CCNGG 1 cut(s) 735
TaaI ACNGT 1 cut(s) 820
TaqI TCGA 3 cut(s) 193, 271, 746
TaqII GACCGA 1 cut(s) 289
TasI AATT 4 cut(s) 149, 416, 515, 596
TatI WGTACW 2 cut(s) 55, 634
TfiI GAWTC 3 cut(s) 331, 447, 468
TscAI CASTG 2 cut(s) 469, 825
TseFI GTSAC 2 cut(s) 587, 659
TseI GCWGC 2 cut(s) 19, 176
Tsp45I GTSAC 2 cut(s) 587, 659
TspDTI ATGAA 2 cut(s) 540, 703
TspGWI ACGGA 2 cut(s) 179, 536
TspRI CASTG 2 cut(s) 469, 825
Van91I CCANNNNNTGG 3 cut(s) 400, 464, 617
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XspI CTAG 3 cut(s) 173, 410, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.