Rorug05G0444700

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000139
Physical Location & Seq
Reverse (-)
61580034 .. 61583418
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0444700.1

Sequence Viewer

Length: 1668 bp
ATGGAGGCAGAGACACCAAAATCTGAGCAGTCGCCGCCGGAGCAGCCACCGGCAGGGCAGCGAAGCTTGCCGAGGAAGAAAATGACAAAGCAGTTAACCGGAAAGCGCGATGATACACCTTTGCATTCTGCTGCGAGGTCAGGGAATATGGCTGTGGTGAAAGATATCCTTGAGAATACAGGAGAGGAAGAGTTGAAGGAATTATTGGCCAAGCAAAATTCTTCTGCTGAGACACCCTTGTATGTTGCTTCGGAATATGGTTATGTCGATTTGGTTAGTGAGATGATTAAATACTATGATCTTGCTACCGCTGGAGTCAAAGCGCGAAATGGGTTTGATGCATTGCACATTGCTGCCAAACAAGGGGATATGGATGTGTTGAAAATCCTTATGGATGCTCATCCAGAATTGACTATGACCGTGGATCTCTCAAACACCACGGCTTTGCACACGGCTGCAAACCAAGGGCATATTGAGGTTGTGAACTTTTTATTGGAAGCAGGGAGCAGCCTGGCAACCATTGCTCGAAGCAATGGCAAAACCGCGCTGCATTCTGCAGCAAGAAATGGTCATTTGGAGGTTATGAAAGCGCTTCTCGAAAAGGAGCCTGGTATTGCAACTCGTACCGATAAGAAGGGGCAGACTGCACTTCATATGGCAGCAAAGGGGCAGAATCTTGAGGTGGTGGAGTTGTTGATTAATGCGGATTCTGCATTGATAAATATGTGTGATAACAAAGAAAACACAGCATTGCATATAGCTACTCGAAAGGGTAGAACTGAGATTGTTAAGATGCTTCTCCAACACAGTGAAACAGAGGTAAAAACAATTAACAAGTCCGCAGAAACTGCCCTCGACACTGCAGAGAAAACCGGGAACTCTGATATCAAAGCCCTTCTGCAGGAGCATGGTGTCCAGAGTGCTAAAGATCTCAGGCCACAACCAAAAAACCCAGCTCGAGAGCTGAAACAAACCGTGAGTGACATAAAACACGAAGTCCACCACCAGCTAGAACACACTCGTCAAACAAGAAGACGCGTCCAAGGCATTGCCAAACGCCTTCACAAAATGCACACAGAAGGCCTCAACAATGCCATAAACTCCAACACTGTAGTTGCTGTCCTCATTGCCACCGTCACCTTTGCAGGCATTTTCCAGATCCCTGGCCAGTGGGTCGATGACCCCAAAGAAATTCCTGACGGGATGTCACTTGGTGAAGCCAAAATTGCTAACCAAACTGCCTTTAAAGTCTTCTTCGTCTTCAATGCAATTGCCCTTTTCATCTCTCTGGCTGTTGTGGTGGTGCAAACTTCAGTTGTGGTAATCGAGAGCAAAGCAAAGACGCACATGATGGCAATCATTAACAAGCTAATGTGGTTCGCTTGTGTGAATCTCTCCGTGGCATTCTTAGCACTCTCTTTTGTTGTGGTAGGAGCAGATGAAAAGTGGCTTGCAATTGGGGTAACCATTATTGGAACGGTAATAATGATTGGAACTTTGGGGACTATGTGTTTCTGGATTGTTAGGCATCGGATGGAGGCCAAAAGTACGAGAACGGTCCGAAGAAATTCGATAGGAAGCCAGCAGTCAAAATCATGGTCTTTGTCTGCAGTTATGTCTGAATCTGAGCTCCTGAACAACGAGTTTAAGAAGATGTATGCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

555

Amino Acids

60.86

Weight (kDa)

8.66

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 35 - 97 7e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 104 - 170 2.4e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 115 - 165 5.9e-08 Ankyrin repeats (many copies)
Ank_4 PF13637 149 - 199 7.1e-11 Ankyrin repeats (many copies)
Ank_2 PF12796 177 - 235 1.4e-14 Ankyrin repeats (3 copies)
Ank PF00023 178 - 201 9.1e-06 Ankyrin repeat
Ank_4 PF13637 190 - 233 2.1e-07 Ankyrin repeats (many copies)
Ank_5 PF13857 198 - 254 2e-09 Ankyrin repeats (many copies)
Ank PF00023 213 - 245 1.5e-06 Ankyrin repeat
Ank_2 PF12796 240 - 305 1.1e-08 Ankyrin repeats (3 copies)
PGG PF13962 360 - 476 1e-27 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 108, 325, 545, 1038
AciI CCGC 5 cut(s) 35, 309, 543, 704, 840
AclWI GGATC 2 cut(s) 432, 1153
AcoI YGGCCR 2 cut(s) 207, 1165
AcsI RAATTY 3 cut(s) 217, 1191, 1567
AcuI CTGAAG 1 cut(s) 1296
AdeI CACNNNGTG 1 cut(s) 1214
AfaI GTAC 2 cut(s) 625, 1549
AfeI AGCGCT 1 cut(s) 591
AfiI CCNNNNNNNGG 3 cut(s) 53, 363, 901
AflIII ACRYGT 1 cut(s) 1036
AgsI TTSAA 3 cut(s) 196, 382, 1264
AhdI GACNNNNNGTC 1 cut(s) 1204
AjnI CCWGG 3 cut(s) 510, 607, 1162
AjuI GAANNNNNNNTTGG 4 cut(s) 188, 220, 476, 508
AluBI AGCT 7 cut(s) 66, 761, 956, 964, 1009, 1369, 1630
AluI AGCT 7 cut(s) 66, 761, 956, 964, 1009, 1369, 1630
Alw21I GWGCWC 1 cut(s) 1632
Alw26I GTCTC 2 cut(s) 5, 224
AlwI GGATC 2 cut(s) 432, 1153
AlwNI CAGNNNCTG 1 cut(s) 848
Ama87I CYCGRG 1 cut(s) 957
Aor51HI AGCGCT 1 cut(s) 591
AoxI GGCC 5 cut(s) 207, 935, 1081, 1165, 1539
ApeKI GCWGC 9 cut(s) 43, 58, 131, 353, 455, 507, 547, 557, 659
ApoI RAATTY 3 cut(s) 217, 1191, 1567
ArsI GACNNNNNNTTYG 2 cut(s) 1583, 1615
AseI ATTAAT 1 cut(s) 699
Asp700I GAANNNNTTC 1 cut(s) 1567
AspLEI GCGC 4 cut(s) 108, 325, 547, 592
AspS9I GGNCC 1 cut(s) 1558
AsuC2I CCSGG 1 cut(s) 874
AsuHPI GGTGA 3 cut(s) 169, 1129, 1226
AvaI CYCGRG 1 cut(s) 957
AvaII GGWCC 1 cut(s) 1558
BalI TGGCCA 2 cut(s) 209, 1167
BanII GRGCYC 1 cut(s) 1632
BbsI GAAGAC 3 cut(s) 1039, 1243, 1252
Bbv12I GWGCWC 1 cut(s) 1632
BbvI GCAGC 9 cut(s) 55, 70, 118, 340, 442, 519, 534, 569, 671
BccI CCATC 2 cut(s) 1345, 1528
BceAI ACGGC 2 cut(s) 456, 468
BciT130I CCWGG 3 cut(s) 512, 609, 1164
BcnI CCSGG 1 cut(s) 874
BcoDI GTCTC 2 cut(s) 5, 224
BfaI CTAG 1 cut(s) 1010
BfmI CTRYAG 5 cut(s) 555, 861, 899, 1110, 1608
BfoI RGCGCY 1 cut(s) 593
BglII AGATCT 1 cut(s) 928
Bme1390I CCNGG 4 cut(s) 512, 609, 874, 1164
Bme18I GGWCC 1 cut(s) 1558
BmeRI GACNNNNNGTC 1 cut(s) 1204
BmeT110I CYCGRG 1 cut(s) 957
BmgT120I GGNCC 1 cut(s) 1558
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 4 cut(s) 512, 609, 874, 1164
BmsI GCATC 4 cut(s) 328, 385, 783, 1537
BpiI GAAGAC 3 cut(s) 1039, 1243, 1252
BpmI CTGGAG 1 cut(s) 333
BpuEI CTTGAG 2 cut(s) 191, 698
BpuMI CCSGG 1 cut(s) 874
BsaBI GATNNNNATC 2 cut(s) 399, 1355
BsaJI CCNNGG 7 cut(s) 71, 420, 438, 463, 1042, 1162, 1398
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 363, 901
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 1168
Bse3DI GCAATG 7 cut(s) 341, 348, 519, 538, 749, 1047, 1125
Bse8I GATNNNNATC 2 cut(s) 399, 1355
BseBI CCWGG 3 cut(s) 512, 609, 1164
BseDI CCNNGG 7 cut(s) 71, 420, 438, 463, 1042, 1162, 1398
BseGI GGATG 5 cut(s) 379, 400, 400, 1209, 1539
BseJI GATNNNNATC 2 cut(s) 399, 1355
BseLI CCNNNNNNNGG 3 cut(s) 53, 363, 901
BseMI GCAATG 7 cut(s) 341, 348, 519, 538, 749, 1047, 1125
BseMII CTCAG 5 cut(s) 15, 219, 771, 946, 1617
BseNI ACTGG 1 cut(s) 1168
BseXI GCAGC 9 cut(s) 55, 70, 118, 340, 442, 519, 534, 569, 671
BseYI CCCAGC 1 cut(s) 952
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 4 cut(s) 108, 325, 545, 1038
BshFI GGCC 5 cut(s) 209, 937, 1083, 1167, 1541
BsiHKAI GWGCWC 1 cut(s) 1632
BsiHKCI CYCGRG 1 cut(s) 957
BsiSI CCGG 4 cut(s) 38, 50, 99, 873
BslFI GGGAC 1 cut(s) 1516
BslI CCNNNNNNNGG 3 cut(s) 53, 363, 901
BsmAI GTCTC 2 cut(s) 5, 224
BsmFI GGGAC 1 cut(s) 1516
BsmI GAATGC 3 cut(s) 124, 550, 1403
BsnI GGCC 5 cut(s) 209, 937, 1083, 1167, 1541
BsoBI CYCGRG 1 cut(s) 957
Bsp1286I GDGCHC 1 cut(s) 1632
Bsp143I GATC 4 cut(s) 298, 424, 928, 1158
BspACI CCGC 5 cut(s) 35, 309, 543, 704, 840
BspANI GGCC 5 cut(s) 209, 937, 1083, 1167, 1541
BspCNI CTCAG 5 cut(s) 16, 220, 772, 945, 1618
BspFNI CGCG 4 cut(s) 108, 325, 545, 1038
BspLI GGNNCC 1 cut(s) 606
BspMAI CTGCAG 4 cut(s) 559, 865, 903, 1612
BspPI GGATC 2 cut(s) 432, 1153
BsrDI GCAATG 7 cut(s) 341, 348, 519, 538, 749, 1047, 1125
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 1 cut(s) 1168
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 7 cut(s) 71, 420, 438, 463, 1042, 1162, 1398
BssMI GATC 4 cut(s) 298, 424, 928, 1158
BssT1I CCWWGG 2 cut(s) 463, 1042
Bst2UI CCWGG 3 cut(s) 512, 609, 1164
Bst4CI ACNGT 7 cut(s) 421, 809, 976, 1111, 1135, 1480, 1558
Bst6I CTCTTC 1 cut(s) 183
BstAPI GCANNNNNTGC 2 cut(s) 521, 848
BstC8I GCNNGC 4 cut(s) 68, 1147, 1452, 1583
BstDEI CTNAG 6 cut(s) 24, 228, 780, 932, 1408, 1626
BstDSI CCRYGG 3 cut(s) 420, 438, 1398
BstEII GGTNACC 1 cut(s) 1462
BstENI CCTNNNNNAGG 1 cut(s) 899
BstF5I GGATG 5 cut(s) 379, 400, 400, 1209, 1539
BstFNI CGCG 4 cut(s) 108, 325, 545, 1038
BstH2I RGCGCY 1 cut(s) 593
BstHHI GCGC 4 cut(s) 108, 325, 547, 592
BstKTI GATC 4 cut(s) 301, 427, 931, 1161
BstMAI GTCTC 2 cut(s) 5, 224
BstMBI GATC 4 cut(s) 298, 424, 928, 1158
BstNI CCWGG 3 cut(s) 512, 609, 1164
BstPI GGTNACC 1 cut(s) 1462
BstSCI CCNGG 4 cut(s) 510, 607, 872, 1162
BstSFI CTRYAG 5 cut(s) 555, 861, 899, 1110, 1608
BstUI CGCG 4 cut(s) 108, 325, 545, 1038
BstV1I GCAGC 9 cut(s) 55, 70, 118, 340, 442, 519, 534, 569, 671
BstV2I GAAGAC 3 cut(s) 1039, 1243, 1252
BstX2I RGATCY 3 cut(s) 424, 928, 1158
BstXI CCANNNNNNTGG 1 cut(s) 1163
BstYI RGATCY 3 cut(s) 424, 928, 1158
BsuRI GGCC 5 cut(s) 209, 937, 1083, 1167, 1541
BtgI CCRYGG 3 cut(s) 420, 438, 1398
BtgZI GCGATG 1 cut(s) 123
BtsCI GGATG 5 cut(s) 379, 400, 400, 1209, 1539
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 4 cut(s) 814, 858, 1107, 1175
Cac8I GCNNGC 4 cut(s) 68, 1147, 1452, 1583
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 4 cut(s) 108, 325, 547, 592
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 1558
CpoI CGGWCCG 1 cut(s) 1558
CseI GACGC 3 cut(s) 1027, 1044, 1351
Csp6I GTAC 2 cut(s) 624, 1548
CspI CGGWCCG 1 cut(s) 1558
CviAII CATG 3 cut(s) 908, 1348, 1596
CviQI GTAC 2 cut(s) 624, 1548
DdeI CTNAG 6 cut(s) 24, 228, 780, 932, 1408, 1626
DpnI GATC 4 cut(s) 300, 426, 930, 1160
DpnII GATC 4 cut(s) 298, 424, 928, 1158
DraI TTTAAA 1 cut(s) 1246
DraIII CACNNNGTG 1 cut(s) 1214
DriI GACNNNNNGTC 1 cut(s) 1204
EaeI YGGCCR 2 cut(s) 207, 1165
Eam1104I CTCTTC 1 cut(s) 183
Eam1105I GACNNNNNGTC 1 cut(s) 1204
EarI CTCTTC 1 cut(s) 183
Ecl136II GAGCTC 1 cut(s) 1630
Eco130I CCWWGG 2 cut(s) 463, 1042
Eco147I AGGCCT 1 cut(s) 1083
Eco24I GRGCYC 1 cut(s) 1632
Eco32I GATATC 2 cut(s) 166, 886
Eco47I GGWCC 1 cut(s) 1558
Eco47III AGCGCT 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 1630
Eco57I CTGAAG 1 cut(s) 1296
Eco88I CYCGRG 1 cut(s) 957
Eco91I GGTNACC 1 cut(s) 1462
EcoICRI GAGCTC 1 cut(s) 1630
EcoNI CCTNNNNNAGG 1 cut(s) 899
EcoO65I GGTNACC 1 cut(s) 1462
EcoRII CCWGG 3 cut(s) 510, 607, 1162
EcoRV GATATC 2 cut(s) 166, 886
EcoT14I CCWWGG 2 cut(s) 463, 1042
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 1632
ErhI CCWWGG 2 cut(s) 463, 1042
FaeI CATG 3 cut(s) 911, 1351, 1599
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 1516
FatI CATG 3 cut(s) 907, 1347, 1595
FauNDI CATATG 1 cut(s) 654
FokI GGATG 5 cut(s) 386, 387, 407, 1216, 1546
FriOI GRGCYC 1 cut(s) 1632
FspBI CTAG 1 cut(s) 1010
GlaI GCGC 4 cut(s) 107, 324, 546, 591
GsaI CCCAGC 1 cut(s) 956
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 593
HaeIII GGCC 5 cut(s) 209, 937, 1083, 1167, 1541
HapII CCGG 4 cut(s) 38, 50, 99, 873
HgaI GACGC 3 cut(s) 1027, 1044, 1351
HhaI GCGC 4 cut(s) 108, 325, 547, 592
Hin1II CATG 3 cut(s) 911, 1351, 1599
Hin6I GCGC 4 cut(s) 106, 323, 545, 590
HinP1I GCGC 4 cut(s) 106, 323, 545, 590
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 5 cut(s) 315, 673, 707, 1390, 1622
HpaI GTTAAC 1 cut(s) 96
HpaII CCGG 4 cut(s) 38, 50, 99, 873
HphI GGTGA 3 cut(s) 169, 1129, 1226
Hpy166II GTNNAC 3 cut(s) 96, 484, 1000
Hpy188I TCNGA 7 cut(s) 25, 253, 883, 1533, 1562, 1621, 1627
Hpy8I GTNNAC 3 cut(s) 96, 484, 1000
HpyAV CCTTC 5 cut(s) 190, 628, 905, 1070, 1073
HpyCH4III ACNGT 7 cut(s) 421, 809, 976, 1111, 1135, 1480, 1558
HpyF3I CTNAG 6 cut(s) 24, 228, 780, 932, 1408, 1626
Hsp92II CATG 3 cut(s) 911, 1351, 1599
HspAI GCGC 4 cut(s) 106, 323, 545, 590
KspAI GTTAAC 1 cut(s) 96
Kzo9I GATC 4 cut(s) 298, 424, 928, 1158
LmnI GCTCC 6 cut(s) 40, 504, 604, 904, 1433, 1635
Lsp1109I GCAGC 9 cut(s) 55, 70, 118, 340, 442, 519, 534, 569, 671
LweI GCATC 4 cut(s) 328, 385, 783, 1537
MaeI CTAG 1 cut(s) 1010
MaeIII GTNAC 4 cut(s) 980, 1135, 1206, 1462
MalI GATC 4 cut(s) 300, 426, 930, 1160
MboI GATC 4 cut(s) 298, 424, 928, 1158
MboII GAAGA 9 cut(s) 88, 200, 213, 1044, 1243, 1246, 1252, 1575, 1663
MfeI CAATTG 2 cut(s) 1269, 1455
MflI RGATCY 3 cut(s) 424, 928, 1158
MhlI GDGCHC 1 cut(s) 1632
MlsI TGGCCA 2 cut(s) 209, 1167
MluCI AATT 9 cut(s) 200, 217, 407, 828, 1191, 1224, 1269, 1455, 1567
MluI ACGCGT 1 cut(s) 1036
MluNI TGGCCA 2 cut(s) 209, 1167
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 2 cut(s) 826, 1128
Mox20I TGGCCA 2 cut(s) 209, 1167
Mph1103I ATGCAT 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 1567
MscI TGGCCA 2 cut(s) 209, 1167
MseI TTAA 8 cut(s) 95, 288, 699, 789, 831, 1245, 1362, 1647
Msp20I TGGCCA 2 cut(s) 209, 1167
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 4 cut(s) 38, 50, 99, 873
MspR9I CCNGG 4 cut(s) 512, 609, 874, 1164
MunI CAATTG 2 cut(s) 1269, 1455
Mva1269I GAATGC 3 cut(s) 124, 550, 1403
MvaI CCWGG 3 cut(s) 512, 609, 1164
MvnI CGCG 4 cut(s) 108, 325, 545, 1038
NciI CCSGG 1 cut(s) 874
NdeI CATATG 1 cut(s) 654
NdeII GATC 4 cut(s) 298, 424, 928, 1158
NlaIII CATG 3 cut(s) 911, 1351, 1599
NlaIV GGNNCC 1 cut(s) 606
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 3 cut(s) 980, 1135, 1206
NsiI ATGCAT 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 957
PceI AGGCCT 1 cut(s) 1083
PctI GAATGC 3 cut(s) 124, 550, 1403
PdmI GAANNNNTTC 1 cut(s) 1567
PfeI GAWTC 4 cut(s) 673, 707, 1390, 1622
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 1632
Psp6I CCWGG 3 cut(s) 510, 607, 1162
PspEI GGTNACC 1 cut(s) 1462
PspFI CCCAGC 1 cut(s) 952
PspGI CCWGG 3 cut(s) 510, 607, 1162
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 1558
PstI CTGCAG 4 cut(s) 559, 865, 903, 1612
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 3 cut(s) 424, 928, 1158
RsaI GTAC 2 cut(s) 625, 1549
RsaNI GTAC 2 cut(s) 624, 1548
Rsr2I CGGWCCG 1 cut(s) 1558
RsrII CGGWCCG 1 cut(s) 1558
SacI GAGCTC 1 cut(s) 1632
SaqAI TTAA 8 cut(s) 95, 288, 699, 789, 831, 1245, 1362, 1647
Sau3AI GATC 4 cut(s) 298, 424, 928, 1158
Sau96I GGNCC 1 cut(s) 1558
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 4 cut(s) 512, 609, 874, 1164
SduI GDGCHC 1 cut(s) 1632
SfaNI GCATC 4 cut(s) 328, 385, 783, 1537
SfcI CTRYAG 5 cut(s) 555, 861, 899, 1110, 1608
Sfr274I CTCGAG 1 cut(s) 957
SinI GGWCC 1 cut(s) 1558
SlaI CTCGAG 1 cut(s) 957
SmlI CTYRAG 3 cut(s) 170, 677, 957
SmoI CTYRAG 3 cut(s) 170, 677, 957
Sse9I AATT 9 cut(s) 200, 217, 407, 828, 1191, 1224, 1269, 1455, 1567
SseBI AGGCCT 1 cut(s) 1083
SsiI CCGC 5 cut(s) 35, 309, 543, 704, 840
SspMI CTAG 1 cut(s) 1010
SstI GAGCTC 1 cut(s) 1632
StuI AGGCCT 1 cut(s) 1083
StyD4I CCNGG 4 cut(s) 510, 607, 872, 1162
StyI CCWWGG 2 cut(s) 463, 1042
TaaI ACNGT 7 cut(s) 421, 809, 976, 1111, 1135, 1480, 1558
TaqI TCGA 9 cut(s) 267, 526, 597, 766, 855, 958, 1176, 1326, 1571
TasI AATT 9 cut(s) 200, 217, 407, 828, 1191, 1224, 1269, 1455, 1567
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 4 cut(s) 673, 707, 1390, 1622
Tru1I TTAA 8 cut(s) 95, 288, 699, 789, 831, 1245, 1362, 1647
Tru9I TTAA 8 cut(s) 95, 288, 699, 789, 831, 1245, 1362, 1647
TscAI CASTG 4 cut(s) 814, 865, 1114, 1175
TseFI GTSAC 3 cut(s) 980, 1135, 1206
TseI GCWGC 9 cut(s) 43, 58, 131, 353, 455, 507, 547, 557, 659
Tsp45I GTSAC 3 cut(s) 980, 1135, 1206
TspDTI ATGAA 4 cut(s) 599, 641, 1270, 1455
TspGWI ACGGA 1 cut(s) 1387
TspRI CASTG 4 cut(s) 814, 865, 1114, 1175
VpaK11BI GGWCC 1 cut(s) 1558
VspI ATTAAT 1 cut(s) 699
XagI CCTNNNNNAGG 1 cut(s) 899
XapI RAATTY 3 cut(s) 217, 1191, 1567
XhoI CTCGAG 1 cut(s) 957
XmnI GAANNNNTTC 1 cut(s) 1567
XspI CTAG 1 cut(s) 1010
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.