Rroxscaffold_4G00279160

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000139
Physical Location & Seq
Reverse (-)
2034486 .. 2035809
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279160.1

Sequence Viewer

Length: 1221 bp
ATGTTGGCAATGTTGAAGAACAAGGAGCACCTTGATCTCCAACATCTCCCTGAACATGTTGTACTCAACATTCTCTGCCGGTTGCCGGTCAAGTCCTTGATCCGCTTCACTTGTGTCTCAAAACGCTGGCGCTCTCTTATCATCTCCGACCACCAATTTGGCAACTCCCATTTCCAACTAGCAGCATCTCAGCTCCGTCATAATGTCTTGATTTCAGCAGGTGCAACACCCCCTGAGATGTTACGCTCTCGATTTCTATCCTTATCAGAAGATGATAACTTATTGATCAGAAATCTCAACTGGCCATGGCCATCCGAGTCGTATAGCGGCATTCTAGTGATGGGCTCTTGCAATGGTTTGGTAGTTTTAGGCCACTCGAGATACGTACCTTGTCCAAATTTTCAGATGGGGATGGCAAAATTGAGAGAAGCAAAGCAAGAGAGGGAAATGAGCGGTGTATATTATGGTTTTGGTCGAGTGTCGGCCTCCGACGACGACGACTACAAACTTGTGGTGATACAAAGTTTGGGTGGTTTTATGGTAGTACATGTGTTCTCAGTCAGAGCCAACTGTTGGAAAATTGTTAAAGCTTCTTACTTGTCGTCATACCGCCTCTGGTCTGAAGAATTGGGGACTTATTCAAATGGAGCGATTCATTGGGTCAGTAACCGTGAACCTGGGATTTTCGAGCCACCTGTCTATGCTTTTGATCTGGCAAATGAGGAGTTTCGGGAAATGCCATTGCCTGTTGTTAGCCGTAATGAAGATGGCATGGAAATGACGCAAATTAGAACTCAAGTTCTTTTAGGAGAATGTCTTTGTGTGATGTTTCAGGATGTGACGTTTCAGGACACTAAAAAGTACACTGAATTTTGGGTGATGAAAGAGTATGGGCTGCCTGAGTCTTGGGTTAAACTCTTTGGGTTTAATGTACATGATTTACCAGATGTGTTTGATTCATTATATAAATGCCATTTTTGGGATCCTATTTTCATTGCAGAAGACGGTACAGTTGTGATCAAACTGCGTTCCTGGTCGGAGCTCATCTGGGTTAAATGCCGCAAAGAAGAGAAGCCAGTCTGCACCATCCGGTACCGTCTTGAGGAGGTGCTGGGATATAAGTATGGATTTAATGCCATTTTGTATGATGAAACTCTAGTTTCGATACCTGAGGATTATGGTGATTCATGTGGCTTGAGACTCAGAGGCCTGAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

406

Amino Acids

46.89

Weight (kDa)

6.15

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 50 7e-11 F-box domain
F-box-like PF12937 13 - 50 4.3e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 209
Acc65I GGTACC 1 cut(s) 1092
AccB1I GGYRCC 1 cut(s) 1092
AccB7I CCANNNNNTGG 1 cut(s) 573
AccBSI CCGCTC 1 cut(s) 453
AciI CCGC 5 cut(s) 103, 327, 453, 610, 1060
AclWI GGATC 3 cut(s) 94, 977, 990
AcoI YGGCCR 2 cut(s) 302, 308
AcsI RAATTY 2 cut(s) 397, 869
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 7 cut(s) 63, 387, 546, 863, 933, 1009, 1094
AfiI CCNNNNNNNGG 4 cut(s) 85, 573, 979, 1102
AflIII ACRYGT 2 cut(s) 55, 547
AgsI TTSAA 2 cut(s) 16, 642
AjnI CCWGG 2 cut(s) 676, 1031
AluBI AGCT 3 cut(s) 193, 590, 1042
AluI AGCT 3 cut(s) 193, 590, 1042
Alw21I GWGCWC 2 cut(s) 30, 1044
Alw26I GTCTC 2 cut(s) 121, 1192
AlwI GGATC 3 cut(s) 94, 977, 990
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 5 cut(s) 302, 308, 370, 483, 1207
ApeKI GCWGC 2 cut(s) 182, 895
ApoI RAATTY 2 cut(s) 397, 869
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
Asp718I GGTACC 1 cut(s) 1092
AspLEI GCGC 1 cut(s) 132
AsuHPI GGTGA 3 cut(s) 526, 889, 1193
AvaI CYCGRG 1 cut(s) 376
AxyI CCTNAGG 1 cut(s) 1170
BaeI ACNNNNGTAYC 2 cut(s) 999, 1032
BalI TGGCCA 2 cut(s) 304, 310
BamHI GGATCC 1 cut(s) 982
BanI GGYRCC 1 cut(s) 1092
BanII GRGCYC 2 cut(s) 347, 1044
BbsI GAAGAC 1 cut(s) 1008
Bbv12I GWGCWC 2 cut(s) 30, 1044
BbvI GCAGC 2 cut(s) 194, 882
BccI CCATC 6 cut(s) 319, 334, 400, 406, 761, 1094
BceAI ACGGC 1 cut(s) 741
BciT130I CCWGG 2 cut(s) 678, 1033
BclI TGATCA 2 cut(s) 285, 1017
BcoDI GTCTC 2 cut(s) 121, 1192
BfaI CTAG 3 cut(s) 179, 335, 1157
BfoI RGCGCY 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 4 cut(s) 183, 328, 896, 1060
BlsI GCNGC 4 cut(s) 184, 329, 897, 1061
Bme1390I CCNGG 2 cut(s) 678, 1033
BmeT110I CYCGRG 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 984, 1094
BmrFI CCNGG 2 cut(s) 678, 1033
BmsI GCATC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 1008
BpuEI CTTGAG 3 cut(s) 780, 1121, 1216
BsaAI YACGTR 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 305, 677
BsaWI WCCGGW 1 cut(s) 1089
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 573, 979, 1102
Bse118I RCCGGY 2 cut(s) 78, 85
Bse1I ACTGG 2 cut(s) 305, 1076
Bse21I CCTNAGG 1 cut(s) 1170
Bse3DI GCAATG 4 cut(s) 15, 358, 740, 993
Bse8I GATNNNNATC 1 cut(s) 256
BseBI CCWGG 2 cut(s) 678, 1033
BseDI CCNNGG 2 cut(s) 305, 677
BseGI GGATG 4 cut(s) 311, 417, 841, 1086
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 4 cut(s) 85, 573, 979, 1102
BseMI GCAATG 4 cut(s) 15, 358, 740, 993
BseMII CTCAG 6 cut(s) 203, 225, 570, 891, 1161, 1216
BseNI ACTGG 2 cut(s) 305, 1076
BseRI GAGGAG 2 cut(s) 737, 1118
BseXI GCAGC 2 cut(s) 194, 882
BseYI CCCAGC 1 cut(s) 1111
BsgI GTGCAG 1 cut(s) 1066
BshFI GGCC 5 cut(s) 304, 310, 372, 485, 1209
BshNI GGYRCC 1 cut(s) 1092
BsiHKAI GWGCWC 2 cut(s) 30, 1044
BsiHKCI CYCGRG 1 cut(s) 376
BsiSI CCGG 3 cut(s) 79, 86, 1090
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 4 cut(s) 85, 573, 979, 1102
BsmAI GTCTC 2 cut(s) 121, 1192
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 5 cut(s) 304, 310, 372, 485, 1209
BsoBI CYCGRG 1 cut(s) 376
Bsp1286I GDGCHC 3 cut(s) 30, 347, 1044
Bsp1407I TGTACA 1 cut(s) 931
Bsp143I GATC 6 cut(s) 34, 99, 285, 709, 982, 1017
Bsp19I CCATGG 1 cut(s) 305
BspACI CCGC 5 cut(s) 103, 327, 453, 610, 1060
BspANI GGCC 5 cut(s) 304, 310, 372, 485, 1209
BspCNI CTCAG 6 cut(s) 202, 226, 569, 892, 1162, 1215
BspLI GGNNCC 2 cut(s) 984, 1094
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 3 cut(s) 94, 977, 990
BspT107I GGYRCC 1 cut(s) 1092
BsrBI CCGCTC 1 cut(s) 453
BsrDI GCAATG 4 cut(s) 15, 358, 740, 993
BsrFI RCCGGY 2 cut(s) 78, 85
BsrGI TGTACA 1 cut(s) 931
BsrI ACTGG 2 cut(s) 305, 1076
BssAI RCCGGY 2 cut(s) 78, 85
BssECI CCNNGG 2 cut(s) 305, 677
BssMI GATC 6 cut(s) 34, 99, 285, 709, 982, 1017
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 678, 1033
Bst4CI ACNGT 5 cut(s) 572, 671, 1007, 1012, 1097
Bst6I CTCTTC 1 cut(s) 1062
BstAUI TGTACA 1 cut(s) 931
BstBAI YACGTR 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 6 cut(s) 189, 234, 556, 900, 1170, 1202
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 4 cut(s) 311, 417, 841, 1086
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 6 cut(s) 37, 102, 288, 712, 985, 1020
BstMAI GTCTC 2 cut(s) 121, 1192
BstMBI GATC 6 cut(s) 34, 99, 285, 709, 982, 1017
BstNI CCWGG 2 cut(s) 678, 1033
BstNSI RCATGY 2 cut(s) 59, 551
BstSCI CCNGG 2 cut(s) 676, 1031
BstSNI TACGTA 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 194, 882
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 1 cut(s) 982
BstXI CCANNNNNNTGG 1 cut(s) 158
BstYI RGATCY 1 cut(s) 982
Bsu36I CCTNAGG 1 cut(s) 1170
BsuRI GGCC 5 cut(s) 304, 310, 372, 485, 1209
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 4 cut(s) 311, 417, 841, 1086
BtsIMutI CAGTG 1 cut(s) 864
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 2 cut(s) 78, 85
CseI GACGC 1 cut(s) 790
Csp6I GTAC 7 cut(s) 62, 386, 545, 862, 932, 1008, 1093
CviAII CATG 6 cut(s) 56, 306, 548, 772, 935, 1188
CviQI GTAC 7 cut(s) 62, 386, 545, 862, 932, 1008, 1093
DdeI CTNAG 6 cut(s) 189, 234, 556, 900, 1170, 1202
DpnI GATC 6 cut(s) 36, 101, 287, 711, 984, 1019
DpnII GATC 6 cut(s) 34, 99, 285, 709, 982, 1017
EaeI YGGCCR 2 cut(s) 302, 308
Eam1104I CTCTTC 1 cut(s) 1062
EarI CTCTTC 1 cut(s) 1062
Ecl136II GAGCTC 1 cut(s) 1042
Eco105I TACGTA 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 305
Eco147I AGGCCT 1 cut(s) 1209
Eco24I GRGCYC 2 cut(s) 347, 1044
Eco53kI GAGCTC 1 cut(s) 1042
Eco57I CTGAAG 1 cut(s) 642
Eco81I CCTNAGG 1 cut(s) 1170
Eco88I CYCGRG 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 1042
EcoRII CCWGG 2 cut(s) 676, 1031
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 2 cut(s) 347, 1044
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 6 cut(s) 59, 309, 551, 775, 938, 1191
FaqI GGGAC 1 cut(s) 646
FatI CATG 6 cut(s) 55, 305, 547, 771, 934, 1187
FbaI TGATCA 2 cut(s) 285, 1017
Fnu4HI GCNGC 4 cut(s) 183, 328, 896, 1060
FokI GGATG 4 cut(s) 298, 424, 848, 1073
FriOI GRGCYC 2 cut(s) 347, 1044
Fsp4HI GCNGC 4 cut(s) 183, 328, 896, 1060
FspBI CTAG 3 cut(s) 179, 335, 1157
GlaI GCGC 1 cut(s) 131
GluI GCNGC 4 cut(s) 183, 328, 896, 1060
GsaI CCCAGC 1 cut(s) 1115
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 5 cut(s) 304, 310, 372, 485, 1209
HapII CCGG 3 cut(s) 79, 86, 1090
HgaI GACGC 1 cut(s) 790
HhaI GCGC 1 cut(s) 132
Hin1II CATG 6 cut(s) 59, 309, 551, 775, 938, 1191
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 6 cut(s) 317, 652, 902, 956, 1184, 1200
HpaII CCGG 3 cut(s) 79, 86, 1090
HphI GGTGA 3 cut(s) 526, 889, 1193
Hpy166II GTNNAC 2 cut(s) 674, 864
Hpy188III TCNNGA 7 cut(s) 208, 249, 378, 731, 833, 848, 1100
Hpy8I GTNNAC 2 cut(s) 674, 864
Hpy99I CGWCG 3 cut(s) 494, 497, 500
HpyCH4III ACNGT 5 cut(s) 572, 671, 1007, 1012, 1097
HpyCH4IV ACGT 2 cut(s) 384, 842
HpyCH4V TGCA 4 cut(s) 224, 351, 998, 1083
HpyF3I CTNAG 6 cut(s) 189, 234, 556, 900, 1170, 1202
HpySE526I ACGT 2 cut(s) 384, 842
Hsp92II CATG 6 cut(s) 59, 309, 551, 775, 938, 1191
HspAI GCGC 1 cut(s) 130
KpnI GGTACC 1 cut(s) 1096
Ksp22I TGATCA 2 cut(s) 285, 1017
Kzo9I GATC 6 cut(s) 34, 99, 285, 709, 982, 1017
LmnI GCTCC 4 cut(s) 25, 198, 647, 1039
Lsp1109I GCAGC 2 cut(s) 194, 882
LweI GCATC 1 cut(s) 194
MaeI CTAG 3 cut(s) 179, 335, 1157
MaeII ACGT 2 cut(s) 384, 842
MaeIII GTNAC 3 cut(s) 240, 665, 838
MalI GATC 6 cut(s) 36, 101, 287, 711, 984, 1019
MbiI CCGCTC 1 cut(s) 453
MboI GATC 6 cut(s) 34, 99, 285, 709, 982, 1017
MboII GAAGA 6 cut(s) 28, 281, 635, 776, 1013, 1079
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 3 cut(s) 30, 347, 1044
MlsI TGGCCA 2 cut(s) 304, 310
MluCI AATT 7 cut(s) 155, 397, 419, 579, 626, 786, 869
MluNI TGGCCA 2 cut(s) 304, 310
MlyI GAGTC 3 cut(s) 326, 911, 1194
MmeI TCCRAC 6 cut(s) 64, 171, 199, 513, 554, 1017
MnlI CCTC 8 cut(s) 435, 496, 623, 715, 1096, 1099, 1165, 1199
Mox20I TGGCCA 2 cut(s) 304, 310
MscI TGGCCA 2 cut(s) 304, 310
MseI TTAA 5 cut(s) 585, 912, 927, 1053, 1131
MslI CAYNNNNRTG 2 cut(s) 335, 776
Msp20I TGGCCA 2 cut(s) 304, 310
MspI CCGG 3 cut(s) 79, 86, 1090
MspR9I CCNGG 2 cut(s) 678, 1033
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 2 cut(s) 678, 1033
NcoI CCATGG 1 cut(s) 305
NdeII GATC 6 cut(s) 34, 99, 285, 709, 982, 1017
NlaIII CATG 6 cut(s) 59, 309, 551, 775, 938, 1191
NlaIV GGNNCC 2 cut(s) 984, 1094
NmuCI GTSAC 1 cut(s) 838
NspI RCATGY 2 cut(s) 59, 551
PaeR7I CTCGAG 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 209
PceI AGGCCT 1 cut(s) 1209
PciI ACATGT 2 cut(s) 55, 547
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 3 cut(s) 652, 956, 1184
PflMI CCANNNNNTGG 1 cut(s) 573
PkrI GCNGC 4 cut(s) 184, 329, 897, 1061
PleI GAGTC 3 cut(s) 325, 910, 1194
PpsI GAGTC 3 cut(s) 325, 910, 1194
Ppu21I YACGTR 1 cut(s) 385
PscI ACATGT 2 cut(s) 55, 547
Psp124BI GAGCTC 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 676, 1031
PspFI CCCAGC 1 cut(s) 1111
PspGI CCWGG 2 cut(s) 676, 1031
PspN4I GGNNCC 2 cut(s) 984, 1094
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
PsuI RGATCY 1 cut(s) 982
RsaI GTAC 7 cut(s) 63, 387, 546, 863, 933, 1009, 1094
RsaNI GTAC 7 cut(s) 62, 386, 545, 862, 932, 1008, 1093
RseI CAYNNNNRTG 2 cut(s) 335, 776
SacI GAGCTC 1 cut(s) 1044
SaqAI TTAA 5 cut(s) 585, 912, 927, 1053, 1131
SatI GCNGC 4 cut(s) 183, 328, 896, 1060
Sau3AI GATC 6 cut(s) 34, 99, 285, 709, 982, 1017
SchI GAGTC 3 cut(s) 326, 911, 1194
ScrFI CCNGG 2 cut(s) 678, 1033
SduI GDGCHC 3 cut(s) 30, 347, 1044
SfaNI GCATC 1 cut(s) 194
Sfr274I CTCGAG 1 cut(s) 376
SlaI CTCGAG 1 cut(s) 376
SmiMI CAYNNNNRTG 2 cut(s) 335, 776
SmlI CTYRAG 4 cut(s) 376, 795, 1100, 1195
SmoI CTYRAG 4 cut(s) 376, 795, 1100, 1195
SnaBI TACGTA 1 cut(s) 385
Sse9I AATT 7 cut(s) 155, 397, 419, 579, 626, 786, 869
SseBI AGGCCT 1 cut(s) 1209
SsiI CCGC 5 cut(s) 103, 327, 453, 610, 1060
SspMI CTAG 3 cut(s) 179, 335, 1157
SstI GAGCTC 1 cut(s) 1044
StuI AGGCCT 1 cut(s) 1209
StyD4I CCNGG 2 cut(s) 676, 1031
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 5 cut(s) 572, 671, 1007, 1012, 1097
TaiI ACGT 2 cut(s) 387, 845
TaqI TCGA 5 cut(s) 250, 377, 475, 687, 1163
TasI AATT 7 cut(s) 155, 397, 419, 579, 626, 786, 869
TatI WGTACW 4 cut(s) 61, 544, 861, 931
TauI GCSGC 2 cut(s) 330, 1062
TfiI GAWTC 3 cut(s) 652, 956, 1184
Tru1I TTAA 5 cut(s) 585, 912, 927, 1053, 1131
Tru9I TTAA 5 cut(s) 585, 912, 927, 1053, 1131
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 2 cut(s) 182, 895
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 7 cut(s) 644, 777, 896, 948, 982, 1164, 1176
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 871
Van91I CCANNNNNTGG 1 cut(s) 573
XapI RAATTY 2 cut(s) 397, 869
XceI RCATGY 2 cut(s) 59, 551
XhoI CTCGAG 1 cut(s) 376
XspI CTAG 3 cut(s) 179, 335, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.