Rw7G019970

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000139
Physical Location & Seq
Reverse (-)
22321990 .. 22322988
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019970.1

Sequence Viewer

Length: 528 bp
ATGTTGAAGAACAAGGAGCAGCAGGAGCTCCAACATGTCCCTGAACATGTTGTGCTCAACATTCTCTGCCGCTTGCGGGTCAAGTCCTTGATCCGCTTCACTTGTGTCTCAAAACGCTGGCGCTCTCTTATCATTTCCGACCCCCAATTTGGCAACTCCCATTTCCAACTAGCAGCATCCCACCTCCGTCAAAATGTCTTAATCGTTAACATTTCAAAAGGTACACTCGGAACTATGGTACCCTTTGGATTTCAATCCGTGCAAGATAAATTTTCGATCAAAAATCTCACCTCCCCATTCCAGCGGTGTAGCCAAATTCCAGTAATGGGCTCTTGCAATGGTTTGGTAGTTTTAGCTAATTTCCATCCCTATGTTAGGGTGTCTCGATTCCAACCATGTTCTGATGATTATAATAGTCTGGTAATGTGGAACCCATCAACTGGATTCTTCCGCAACATACCTTGTCCAAATTTTCAGATTGGGATGATAAAATTAACAGAGGAAGAGAATGGGATCGGTGTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

175

Amino Acids

19.96

Weight (kDa)

9.47

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 47 5.5e-09 F-box domain
F-box-like PF12937 11 - 47 8.3e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
Acc65I GGTACC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 440
AciI CCGC 5 cut(s) 70, 76, 94, 304, 451
AclWI GGATC 2 cut(s) 85, 521
AcsI RAATTY 3 cut(s) 269, 315, 469
AfaI GTAC 2 cut(s) 223, 240
AfiI CCNNNNNNNGG 5 cut(s) 76, 149, 326, 375, 440
AflIII ACRYGT 2 cut(s) 34, 46
AgsI TTSAA 3 cut(s) 7, 216, 254
AluBI AGCT 2 cut(s) 28, 356
AluI AGCT 2 cut(s) 28, 356
Alw21I GWGCWC 2 cut(s) 30, 57
Alw26I GTCTC 2 cut(s) 112, 387
AlwI GGATC 2 cut(s) 85, 521
ApeKI GCWGC 2 cut(s) 19, 173
ApoI RAATTY 3 cut(s) 269, 315, 469
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp718I GGTACC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 2 cut(s) 30, 332
Bbv12I GWGCWC 2 cut(s) 30, 57
BbvI GCAGC 2 cut(s) 31, 185
BccI CCATC 2 cut(s) 372, 442
BcoDI GTCTC 2 cut(s) 112, 387
BfaI CTAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 124
BisI GCNGC 3 cut(s) 20, 70, 174
BlsI GCNGC 3 cut(s) 21, 71, 175
BmiI GGNNCC 2 cut(s) 240, 431
BmsI GCATC 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 253
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 149, 326, 375, 440
Bse1I ACTGG 2 cut(s) 320, 445
Bse3DI GCAATG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 253
BseGI GGATG 3 cut(s) 176, 364, 489
BseJI GATNNNNATC 1 cut(s) 253
BseLI CCNNNNNNNGG 5 cut(s) 76, 149, 326, 375, 440
BseMI GCAATG 1 cut(s) 343
BseNI ACTGG 2 cut(s) 320, 445
BseXI GCAGC 2 cut(s) 31, 185
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 30, 57
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 5 cut(s) 76, 149, 326, 375, 440
BsmAI GTCTC 2 cut(s) 112, 387
BsmFI GGGAC 1 cut(s) 23
Bsp1286I GDGCHC 3 cut(s) 30, 57, 332
Bsp143I GATC 3 cut(s) 90, 276, 513
BspACI CCGC 5 cut(s) 70, 76, 94, 304, 451
BspLI GGNNCC 2 cut(s) 240, 431
BspPI GGATC 2 cut(s) 85, 521
BspT107I GGYRCC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 2 cut(s) 320, 445
BssMI GATC 3 cut(s) 90, 276, 513
Bst6I CTCTTC 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 74, 119
BstENI CCTNNNNNAGG 1 cut(s) 373
BstF5I GGATG 3 cut(s) 176, 364, 489
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 3 cut(s) 93, 279, 516
BstMAI GTCTC 2 cut(s) 112, 387
BstMBI GATC 3 cut(s) 90, 276, 513
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 38, 50
BstV1I GCAGC 2 cut(s) 31, 185
BtsCI GGATG 3 cut(s) 176, 364, 489
Cac8I GCNNGC 2 cut(s) 74, 119
CfoI GCGC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 222, 239
CviAII CATG 3 cut(s) 35, 47, 396
CviJI RGCY 4 cut(s) 28, 312, 330, 356
CviKI_1 RGCY 4 cut(s) 28, 312, 330, 356
CviQI GTAC 2 cut(s) 222, 239
DpnI GATC 3 cut(s) 92, 278, 515
DpnII GATC 3 cut(s) 90, 276, 513
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Ecl136II GAGCTC 1 cut(s) 28
Eco24I GRGCYC 2 cut(s) 30, 332
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 373
EcoT38I GRGCYC 2 cut(s) 30, 332
FaeI CATG 3 cut(s) 38, 50, 399
FaiI YATR 8 cut(s) 36, 48, 236, 372, 397, 411, 458, 523
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 34, 46, 395
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 20, 70, 174
FokI GGATG 3 cut(s) 163, 351, 496
FriOI GRGCYC 2 cut(s) 30, 332
Fsp4HI GCNGC 3 cut(s) 20, 70, 174
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 122
GluI GCNGC 3 cut(s) 20, 70, 174
HaeII RGCGCY 1 cut(s) 124
HhaI GCGC 1 cut(s) 123
Hin1II CATG 3 cut(s) 38, 50, 399
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 387, 444
HpaI GTTAAC 1 cut(s) 208
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 208, 224
Hpy188I TCNGA 4 cut(s) 139, 230, 403, 477
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 2 cut(s) 208, 224
HpyCH4V TGCA 2 cut(s) 262, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
Hsp92II CATG 3 cut(s) 38, 50, 399
HspAI GCGC 1 cut(s) 121
KpnI GGTACC 1 cut(s) 242
KspAI GTTAAC 1 cut(s) 208
Kzo9I GATC 3 cut(s) 90, 276, 513
LmnI GCTCC 3 cut(s) 16, 25, 33
LpnPI CCDG 7 cut(s) 8, 54, 103, 314, 333, 404, 426
Lsp1109I GCAGC 2 cut(s) 31, 185
LweI GCATC 1 cut(s) 185
MaeI CTAG 1 cut(s) 170
MalI GATC 3 cut(s) 92, 278, 515
MboI GATC 3 cut(s) 90, 276, 513
MboII GAAGA 3 cut(s) 19, 439, 515
MhlI GDGCHC 3 cut(s) 30, 57, 332
MluCI AATT 6 cut(s) 146, 269, 315, 358, 469, 491
MmeI TCCRAC 4 cut(s) 55, 162, 190, 415
MnlI CCTC 3 cut(s) 194, 301, 493
MseI TTAA 4 cut(s) 200, 207, 494, 526
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 3 cut(s) 90, 276, 513
NlaIII CATG 3 cut(s) 38, 50, 399
NlaIV GGNNCC 2 cut(s) 240, 431
NspI RCATGY 2 cut(s) 38, 50
PciI ACATGT 2 cut(s) 34, 46
PfeI GAWTC 2 cut(s) 387, 444
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 3 cut(s) 21, 71, 175
PscI ACATGT 2 cut(s) 34, 46
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 240, 431
RsaI GTAC 2 cut(s) 223, 240
RsaNI GTAC 2 cut(s) 222, 239
RseI CAYNNNNRTG 1 cut(s) 369
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 4 cut(s) 200, 207, 494, 526
SatI GCNGC 3 cut(s) 20, 70, 174
Sau3AI GATC 3 cut(s) 90, 276, 513
SduI GDGCHC 3 cut(s) 30, 57, 332
SetI ASST 6 cut(s) 30, 186, 223, 293, 358, 463
SfaNI GCATC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 6 cut(s) 146, 269, 315, 358, 469, 491
SsiI CCGC 5 cut(s) 70, 76, 94, 304, 451
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 30
TaqI TCGA 2 cut(s) 275, 385
TasI AATT 6 cut(s) 146, 269, 315, 358, 469, 491
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 2 cut(s) 387, 444
Tru1I TTAA 4 cut(s) 200, 207, 494, 526
Tru9I TTAA 4 cut(s) 200, 207, 494, 526
TseI GCWGC 2 cut(s) 19, 173
TspGWI ACGGA 2 cut(s) 176, 247
Van91I CCANNNNNTGG 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 373
XapI RAATTY 3 cut(s) 269, 315, 469
XceI RCATGY 2 cut(s) 38, 50
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.