Rmu_sc0004647.1_g000006

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004647.1
OG0000139
Physical Location & Seq
Forward (+)
23209 .. 23676
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004647.1_g000006.1.cds

Sequence Viewer

Length: 468 bp
atgctgctataccttactcttgttttcagactacgtatatataacatgatgttctacatatggtctctttcaaagttgatccgcttcacttgtgtctcaaaacgctggcgctctcttatcatttccgaccaccaatttggcaactcccatttccaactagcagcatctcagctccgtcatagtgtcttgatttcagcaggtacaacaccccctgagatgttacgctctcgatttctattcctatcagaagataacttattgaacagaaatctcaactggccaaggccatccgagtcgtatagcgacattctagtaataggctcttgcaatggtttggtagttttaggccactgcaattcccatcgcaatggaataagttctttacctctaggccaacgatattgtcgttattttgaacgtttggtgatcttgaacccatcaactggattcttccgcgagattccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

155

Amino Acids

18.06

Weight (kDa)

10.04

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 443
AccII CGCG 1 cut(s) 456
AciI CCGC 2 cut(s) 82, 454
AclI AACGTT 1 cut(s) 418
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 278
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 4 cut(s) 72, 262, 416, 433
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 2 cut(s) 69, 100
AlwI GGATC 1 cut(s) 73
AoxI GGCC 4 cut(s) 278, 284, 346, 391
ApeKI GCWGC 2 cut(s) 4, 161
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 436
BalI TGGCCA 1 cut(s) 280
BbvI GCAGC 1 cut(s) 173
BccI CCATC 3 cut(s) 295, 369, 445
BcoDI GTCTC 2 cut(s) 69, 100
BfaI CTAG 3 cut(s) 158, 311, 389
BfoI RGCGCY 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 5, 162
BlsI GCNGC 2 cut(s) 6, 163
BmsI GCATC 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 281, 448
Bse3DI GCAATG 2 cut(s) 334, 373
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 2 cut(s) 334, 373
BseMII CTCAG 2 cut(s) 182, 204
BseNI ACTGG 2 cut(s) 281, 448
BseXI GCAGC 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 4 cut(s) 280, 286, 348, 393
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 2 cut(s) 69, 100
BsnI GGCC 4 cut(s) 280, 286, 348, 393
Bso31I GGTCTC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 78, 426
BspACI CCGC 2 cut(s) 82, 454
BspANI GGCC 4 cut(s) 280, 286, 348, 393
BspCNI CTCAG 2 cut(s) 181, 205
BspFNI CGCG 1 cut(s) 456
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 69
BsrDI GCAATG 2 cut(s) 334, 373
BsrI ACTGG 2 cut(s) 281, 448
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 2 cut(s) 78, 426
BssT1I CCWWGG 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 168, 213
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 2 cut(s) 81, 429
BstMAI GTCTC 2 cut(s) 69, 100
BstMBI GATC 2 cut(s) 78, 426
BstSNI TACGTA 1 cut(s) 35
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 173
BstXI CCANNNNNNTGG 2 cut(s) 137, 368
BsuRI GGCC 4 cut(s) 280, 286, 348, 393
BtgZI GCGATG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 46
CviJI RGCY 6 cut(s) 172, 280, 286, 321, 348, 393
CviKI_1 RGCY 6 cut(s) 172, 280, 286, 321, 348, 393
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 168, 213
DpnI GATC 2 cut(s) 80, 428
DpnII GATC 2 cut(s) 78, 426
EaeI YGGCCR 1 cut(s) 278
Eco105I TACGTA 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 1 cut(s) 49
FaiI YATR 9 cut(s) 10, 38, 40, 42, 47, 59, 61, 180, 300
FatI CATG 1 cut(s) 45
FauNDI CATATG 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 5, 162
FokI GGATG 1 cut(s) 274
Fsp4HI GCNGC 2 cut(s) 5, 162
FspBI CTAG 3 cut(s) 158, 311, 389
GlaI GCGC 1 cut(s) 110
GluI GCNGC 2 cut(s) 5, 162
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 4 cut(s) 280, 286, 348, 393
HhaI GCGC 1 cut(s) 111
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 3 cut(s) 293, 447, 460
HphI GGTGA 1 cut(s) 436
Hpy188I TCNGA 4 cut(s) 29, 127, 247, 292
Hpy188III TCNNGA 3 cut(s) 187, 228, 430
HpyCH4IV ACGT 2 cut(s) 34, 418
HpyCH4V TGCA 2 cut(s) 327, 354
HpyF3I CTNAG 2 cut(s) 168, 213
HpySE526I ACGT 2 cut(s) 34, 418
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 78, 426
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 5 cut(s) 91, 183, 225, 262, 429
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 1 cut(s) 173
MaeI CTAG 3 cut(s) 158, 311, 389
MaeII ACGT 2 cut(s) 34, 418
MaeIII GTNAC 1 cut(s) 219
MalI GATC 2 cut(s) 80, 428
MboI GATC 2 cut(s) 78, 426
MboII GAAGA 2 cut(s) 260, 442
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 2 cut(s) 134, 355
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 2 cut(s) 150, 178
MnlI CCTC 1 cut(s) 396
Mox20I TGGCCA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 376
MscI TGGCCA 1 cut(s) 280
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 280
MvnI CGCG 1 cut(s) 456
NdeI CATATG 1 cut(s) 59
NdeII GATC 2 cut(s) 78, 426
NlaIII CATG 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 447, 460
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 2 cut(s) 6, 163
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Ppu21I YACGTR 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 418
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 366
SatI GCNGC 2 cut(s) 5, 162
Sau3AI GATC 2 cut(s) 78, 426
SchI GAGTC 1 cut(s) 302
SetI ASST 6 cut(s) 15, 37, 174, 202, 388, 421
SfaNI GCATC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 366
SnaBI TACGTA 1 cut(s) 35
Sse9I AATT 2 cut(s) 134, 355
SsiI CCGC 2 cut(s) 82, 454
SspMI CTAG 3 cut(s) 158, 311, 389
StyI CCWWGG 1 cut(s) 281
TaiI ACGT 2 cut(s) 37, 421
TaqI TCGA 1 cut(s) 229
TasI AATT 2 cut(s) 134, 355
TfiI GAWTC 2 cut(s) 447, 460
TscAI CASTG 1 cut(s) 356
TseI GCWGC 2 cut(s) 4, 161
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 356
Van91I CCANNNNNTGG 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 376
XspI CTAG 3 cut(s) 158, 311, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.