Rroxscaffold_1G00005680

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000139
Physical Location & Seq
Forward (+)
7715042 .. 7720180
5139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005680.1

Sequence Viewer

Length: 444 bp
ATGTCAATGTCAAAGACACAAGAGGAGAGCTTTGATCTCCATGAAGATGTTATAGTGAAAATTCTTTGCCGCTTGCCGGTCAAGTCCTTGATCCGGTTCACTTGTGTGTCAAAACGATGGCGTTCTATTATCATTTCTGATCCTCAATTTGGCAAGTCTCACCTTCAACTAGCATCACAGCAGGGAGCCCTCCGTCGAAAACTCCTCATCTCCACCTACCCTACAGTTAAAACCGTAGAAGGTCAAATTCCCGATCGTTTTGAAGATAACATGCCTTGGTTGCCCTCTCAATTTCAATCCTTCCAAGGTTATTCTTCAGTCAATAATCTCACCTTCCCATCGGTGGAGAAGAGCCAACGAGTAATGGCCTCGTGCAATGGTTTGGTACTTCTAGGTGAATCCTATAAAAGTTCTTTTAAGAACTTGTCTATCTGGATGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

147

Amino Acids

16.84

Weight (kDa)

9.44

Isoelectric Point (pI)

63.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 47 3.9e-10 F-box domain
F-box-like PF12937 15 - 47 1.9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AclWI GGATC 2 cut(s) 85, 134
AcsI RAATTY 2 cut(s) 60, 246
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 4 cut(s) 76, 93, 149, 343
AgsI TTSAA 3 cut(s) 167, 263, 296
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 2 cut(s) 85, 134
AoxI GGCC 1 cut(s) 366
ApoI RAATTY 2 cut(s) 60, 246
AsuHPI GGTGA 3 cut(s) 152, 322, 407
BanII GRGCYC 1 cut(s) 190
BauI CACGAG 1 cut(s) 370
BccI CCATC 2 cut(s) 111, 346
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 2 cut(s) 170, 392
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 187
BmsI GCATC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 275, 304
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 93, 149, 343
Bse118I RCCGGY 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 382
BseDI CCNNGG 2 cut(s) 275, 304
BseGI GGATG 1 cut(s) 441
BseLI CCNNNNNNNGG 4 cut(s) 76, 93, 149, 343
BseMI GCAATG 1 cut(s) 382
BseRI GAGGAG 2 cut(s) 38, 194
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 77, 94
BslI CCNNNNNNNGG 4 cut(s) 76, 93, 149, 343
BsmAI GTCTC 1 cut(s) 162
BsnI GGCC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 4 cut(s) 34, 90, 139, 253
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 2 cut(s) 85, 134
BspQI GCTCTTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 275, 304
BssMI GATC 4 cut(s) 34, 90, 139, 253
BssSI CACGAG 1 cut(s) 370
BssT1I CCWWGG 2 cut(s) 275, 304
Bst2BI CACGAG 1 cut(s) 370
Bst4CI ACNGT 2 cut(s) 226, 235
Bst6I CTCTTC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 74
BstF5I GGATG 1 cut(s) 441
BstKTI GATC 4 cut(s) 37, 93, 142, 256
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 4 cut(s) 34, 90, 139, 253
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 76
Csp6I GTAC 1 cut(s) 386
CviAII CATG 2 cut(s) 41, 271
CviJI RGCY 4 cut(s) 30, 188, 354, 368
CviKI_1 RGCY 4 cut(s) 30, 188, 354, 368
CviQI GTAC 1 cut(s) 386
DpnI GATC 4 cut(s) 36, 92, 141, 255
DpnII GATC 4 cut(s) 34, 90, 139, 253
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 275, 304
Eco24I GRGCYC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 275, 304
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 275, 304
FaeI CATG 2 cut(s) 44, 274
FaiI YATR 5 cut(s) 42, 53, 272, 405, 442
FatI CATG 2 cut(s) 40, 270
Fnu4HI GCNGC 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 2 cut(s) 170, 392
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 1 cut(s) 368
HapII CCGG 2 cut(s) 77, 94
Hin1II CATG 2 cut(s) 44, 274
HinfI GANTC 1 cut(s) 398
HpaII CCGG 2 cut(s) 77, 94
HphI GGTGA 3 cut(s) 152, 322, 407
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 251, 433
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 4 cut(s) 173, 233, 310, 343
HpyCH4III ACNGT 2 cut(s) 226, 235
HpyCH4V TGCA 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
Hsp92II CATG 2 cut(s) 44, 274
Kzo9I GATC 4 cut(s) 34, 90, 139, 253
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 4 cut(s) 90, 107, 167, 418
LweI GCATC 1 cut(s) 182
MaeI CTAG 2 cut(s) 170, 392
MalI GATC 4 cut(s) 36, 92, 141, 255
MboI GATC 4 cut(s) 34, 90, 139, 253
MboII GAAGA 4 cut(s) 56, 275, 306, 361
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 4 cut(s) 60, 146, 246, 290
MnlI CCTC 6 cut(s) 16, 153, 200, 215, 295, 379
MseI TTAA 2 cut(s) 228, 417
MslI CAYNNNNRTG 2 cut(s) 45, 104
MspI CCGG 2 cut(s) 77, 94
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 4 cut(s) 34, 90, 139, 253
NlaIII CATG 2 cut(s) 44, 274
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 1 cut(s) 71
Ple19I CGATCG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 187
PvuI CGATCG 1 cut(s) 256
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 2 cut(s) 45, 104
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 228, 417
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 4 cut(s) 34, 90, 139, 253
SduI GDGCHC 1 cut(s) 190
SetI ASST 7 cut(s) 32, 165, 218, 244, 310, 335, 397
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 45, 104
Sse9I AATT 4 cut(s) 60, 146, 246, 290
SsiI CCGC 1 cut(s) 70
SspMI CTAG 2 cut(s) 170, 392
StyI CCWWGG 2 cut(s) 275, 304
TaaI ACNGT 2 cut(s) 226, 235
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 60, 146, 246, 290
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 2 cut(s) 228, 417
Tru9I TTAA 2 cut(s) 228, 417
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 182
XapI RAATTY 2 cut(s) 60, 246
XceI RCATGY 1 cut(s) 274
XspI CTAG 2 cut(s) 170, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.