Rroxscaffold_1G00005690

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000139
Physical Location & Seq
Forward (+)
7735775 .. 7737471
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005690.1

Sequence Viewer

Length: 507 bp
ATGCCTTGGTTGCCCTCTCGATTTCAATCCTTAGAAGGTTATTCTTCAGTCAATAATCTCACCTTCCCATTGGAGGAGAAGAGCCAACGAGTAATGGCCTCGCGCAATGGTTTGGTACTTCTAGGACTTAAGGCCTTAAAATCTAAGAAGCAGAACGAAACTGGAGAGGGATTGCCATTTCAAGAAGTTGGAAAACCCAGTTGGAGCACTTATAGTAGTCTGTACAAGACAATGTCGAGCTGCGTCGACCTCCCTGAAGATATTATAGCCAAGATTCTGTGCCGTTTGCCGGTCAAGTCTTTGATCCGGTTCACTTGTGTGTCGAAAAGGTGGCGTTCTGTTGTCATTTCTGATCCTCAGTTTGGAAAATCCCACTACCAACTTGCTTCTCAGCAGAGAACCCTCCGTAGAAAAGTTCTCCTCACCTCCTACCCTACAGTCAGAGAGCCAGGTCCGACGCCCAATGCTGGTTATGATTACAGTGCGGATTTACCCCCTCGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

168

Amino Acids

19.02

Weight (kDa)

9.8

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 83 - 118 2.4e-11 F-box domain
F-box-like PF12937 83 - 118 2.3e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 103
AciI CCGC 1 cut(s) 485
AclWI GGATC 2 cut(s) 298, 347
AcuI CTGAAG 2 cut(s) 30, 276
AcyI GRCGYC 1 cut(s) 458
AfaI GTAC 2 cut(s) 117, 224
AfiI CCNNNNNNNGG 4 cut(s) 73, 289, 362, 467
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 2 cut(s) 26, 182
AjnI CCWGG 1 cut(s) 448
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AleI CACNNNNGTG 1 cut(s) 317
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw21I GWGCWC 1 cut(s) 209
AlwI GGATC 2 cut(s) 298, 347
AoxI GGCC 2 cut(s) 96, 132
ApeKI GCWGC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 52, 415
AvaII GGWCC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 450
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 435
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 1 cut(s) 450
BmrI ACTGGG 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 306
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 289, 362, 467
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 166, 198
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 5
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 4 cut(s) 73, 289, 362, 467
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 371, 404
BseNI ACTGG 2 cut(s) 166, 198
BseRI GAGGAG 2 cut(s) 89, 410
BseXI GCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 98, 134
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 290, 307
BslI CCNNNNNNNGG 4 cut(s) 73, 289, 362, 467
BsnI GGCC 2 cut(s) 98, 134
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 2 cut(s) 303, 352
BspACI CCGC 1 cut(s) 485
BspANI GGCC 2 cut(s) 98, 134
BspCNI CTCAG 2 cut(s) 370, 403
BspFNI CGCG 1 cut(s) 103
BspPI GGATC 2 cut(s) 298, 347
BspQI GCTCTTC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 289
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 2 cut(s) 166, 198
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 2 cut(s) 303, 352
BssNI GRCGYC 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 439, 482
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 458
BstAFI CTTAAG 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 222
BstDEI CTNAG 4 cut(s) 31, 144, 357, 390
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 306, 355
BstMBI GATC 2 cut(s) 303, 352
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 450
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 227
BsuRI GGCC 2 cut(s) 98, 134
BtsIMutI CAGTG 1 cut(s) 487
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 452
CseI GACGC 2 cut(s) 232, 466
Csp6I GTAC 2 cut(s) 116, 223
CviJI RGCY 6 cut(s) 84, 98, 134, 240, 269, 448
CviKI_1 RGCY 6 cut(s) 84, 98, 134, 240, 269, 448
CviQI GTAC 2 cut(s) 116, 223
DdeI CTNAG 4 cut(s) 31, 144, 357, 390
DpnI GATC 2 cut(s) 305, 354
DpnII GATC 2 cut(s) 303, 352
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 5
Eco147I AGGCCT 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 30, 276
EcoRII CCWGG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaiI YATR 3 cut(s) 213, 266, 474
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 98, 134
HapII CCGG 2 cut(s) 290, 307
HgaI GACGC 2 cut(s) 232, 466
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 458
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 1 cut(s) 274
HpaII CCGG 2 cut(s) 290, 307
HphI GGTGA 2 cut(s) 52, 415
Hpy166II GTNNAC 2 cut(s) 247, 312
Hpy188I TCNGA 3 cut(s) 352, 443, 456
Hpy188III TCNNGA 2 cut(s) 18, 182
Hpy8I GTNNAC 2 cut(s) 247, 312
Hpy99I CGWCG 2 cut(s) 248, 460
HpyAV CCTTC 2 cut(s) 29, 73
HpyCH4III ACNGT 2 cut(s) 439, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 4 cut(s) 31, 144, 357, 390
Hsp92I GRCGYC 1 cut(s) 458
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 303, 352
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 8 cut(s) 147, 211, 267, 303, 320, 435, 453, 462
Lsp1109I GCAGC 1 cut(s) 227
MaeI CTAG 1 cut(s) 122
MalI GATC 2 cut(s) 305, 354
MboI GATC 2 cut(s) 303, 352
MboII GAAGA 3 cut(s) 36, 91, 269
MhlI GDGCHC 1 cut(s) 209
MmeI TCCRAC 3 cut(s) 169, 182, 479
MseI TTAA 3 cut(s) 129, 137, 505
MslI CAYNNNNRTG 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 2 cut(s) 290, 307
MspR9I CCNGG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 303, 352
OliI CACNNNNGTG 1 cut(s) 317
PceI AGGCCT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 274
PflFI GACNNNGTC 1 cut(s) 232
PkrI GCNGC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspPI GGNCC 1 cut(s) 452
PsyI GACNNNGTC 1 cut(s) 232
RsaI GTAC 2 cut(s) 117, 224
RsaNI GTAC 2 cut(s) 116, 223
RseI CAYNNNNRTG 1 cut(s) 317
SalI GTCGAC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 3 cut(s) 129, 137, 505
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 303, 352
Sau96I GGNCC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 209
SetI ASST 7 cut(s) 40, 65, 242, 252, 332, 428, 454
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 1 cut(s) 485
SspMI CTAG 1 cut(s) 122
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 439, 482
TaqI TCGA 5 cut(s) 19, 236, 246, 323, 499
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 3 cut(s) 129, 137, 505
Tru9I TTAA 3 cut(s) 129, 137, 505
TscAI CASTG 1 cut(s) 487
TseI GCWGC 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 1 cut(s) 487
Tth111I GACNNNGTC 1 cut(s) 232
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.